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Scope of Microbiology
Scope of Microbiology
- a group of photosynthetic
What is Microbiology? bacteria that produces oxygen.
- Study of microorganisms: ● Many microbes are involved in the
Organisms that EXIST as single Decomposition of Dead Organism
cells or cluster cells and must be and the waste products of living
viewed individually with the aid of organisms refer to as
microscope. Decomposers or
● Saprophytes- an organism that
HALLMARKS OF LIFE: lives on dead or decaying organic
- Metabolism (nutrient uptake, matter, it aids in Fertilization by
biomass, waste output) returning inorganic nutrients to the
- Differentiation (bacillus spp. soil, they break down dead and
caulobacter) dying organic materials (plants and
- Reproduction (binary fission) animals) into nitrates, phosphate
- Communication (Pseudomonas, and other chemicals necessary for
aeruginosa) the growth of plants.
- Evolution (antibiotic resistance,
pathogens) Small Microorganisms includes:
● Bacteria
● Microbiology is the study of ● Algae
MICROBES. ● Protozoa
● GERMS are the microbes that ● Fungi
cause DISEASE. ● Viruses
● MICRO means very small, Often called:
anything so small that it must be ● Microbes
viewed with a microscope. ● Single-celled organism
● MICROBES are most beneficial or ● Germ
have a neutral effect on our lives.
● MICROBIOLOGY is the scientific MICROORGANISM MICROBIOLOGY
study of these microorganisms.
● MICROORGANISMS are those Living things that 1. Study of
organisms that are too individually are too microorganisms
small to see with the naked eye small to be seen by 2. Foundation of modern
and include things like BACTERIA, the naked eye. biotechnology
FUNGI, and VIRUSES. 3. Among the many
● Microbes are essential for life on specialized fields of
this planet as we know it. microbiology
● Some produce oxygen by the
process known as Photosynthesis All of the following ● Virology
● Microbes contribute more oxygen may be considered ● Mycology
to our atmosphere than do plants as microorganisms: ● Bacteriology
thus organism that require oxygen ● Bacteria ● Immunology
(humans owe a debt of gratitude to (eubacteria. ● Microbial ecology
the Algae and ● Archaebacteri ● Biotechnological
a) microbiology
● Fungi (yeasts, ● Environmental
molds) Biology
● •Protozoa ● Forensic
● •Microscopic microbiology
algae ● Molecular biology
● •Viruses
● •Various
parasitic
● worms
Medical Microbiology
- It deals with the study of causative
agents of infectious diseases in
human beings
- Medical microbiology has close - It is concerned with the monitoring,
links with other disciplines such as control and spread of diseases in
pathology, clinical medicine, communities.
pharmacology, and therapeutics.
MICROBES IN OUR LIVES
Pharmaceutical Microbiology - Some are pathogenic (disease-
- It deals with the study of causing)
microorganisms which are - Decompose organic waste
responsible for the production of - Produces through photosynthesis
antibiotics enzymes, vaccines, (e.g.Purple Sulphur bacteria
vitamins, and other pharmaceutical must fix CO₂ to live)
substances - Play role in industry (e.g.
- Also it includes the method of fermentation to produce ethanol
sterilization and disinfection, and acetone)
microbiological testing of - Produce fermented food (vinegar,
pharmaceuticals, sterile product cheese & bread)
preparation and diagnosis of - Produce products used in
disease and treatment. manufacturing(cellulase) and
treatment (insulin)
Agricultural Microbiology
- It is the study of the relationship of MICROORGANISM AND
microorganisms and crops with an FOOD
emphasis on the control of the
plant diseases and improvement of
● Microorganism and Food
yield.
1. Prevent spoilage (tempeh, salted
fish)
Aquatic Microbiology
2. Assist in manufacturing of food
- Aquatic microbiology is the study
of microorganism and their activity
● Microorganisms and Energy
in the fresh and marine water
1. Natural gas (methane)
including lakes, rivers,
2. Ethanol (biofuel)
bays,estuaries and seas
3. Bioremediation
- It also includes water
purification,microbiological
● Microbes and the future
examination and biological
1. Genetic engineering
degradation of waste.
Epidemiology
TYPES OF PROKARYOTES
FAMILY TREE OF
MICROORGANISM: Bacteria (P)/Bacterium (S)
PRIMITIVE CELLS ARE - Prokaryotes
- Has peptidoglycan cell walls
DIVIDED INTO:
- Binary fusion
- Utilize organic/inorganic chemicals, or
1. EUKARYOTES (PRE-
photosynthesis to obtain energy
NUCLEUS): SIMPLE CELLS
- Organisms with a true nucleus and
Archaea
more complex
- Prokaryotic
- Example: algae, fungi, and
- Lack peptidoglycan
protozoa
- Live in extreme environments
- Include:
2. PROKARYOTES (TRUE
● Methanogens
NUCLEUS): COMPLEX CELLS
● Extreme halophiles
- Organisms without true nucleus
● Extreme thermophiles
andless complex cells
- Example: archaea and bacteria
TYPES OF EUKARYOTES
Note: Viruses are microbes but they are not
considered to be cells because they are ● Protozoa
acellular, hence they are not included on the
- Unicellular eukaryote
family tree.
- Absorb or ingest organic chemicals
- May move using pseudopods, cilia
or flagella
- Ex: amoeba
● Algae
- Unicellular/multicellular eukaryote
- Has cellulose cell walls
- Gain energy through
photosynthesis
- Produce molecular and organic
compounds
IDENTIFYING
ASSIGNING SPECIFIC NAMES MICROORGANISMS
CLASSIFICATION OF
TAXONOMY: NAMING,
BACTERIA ON THE BASIS OF
CLASSIFYING, AND
THEIR RELATIONSHIP TO
OXYGEN AND CARBON ● (384-322) Aristotle and others
DIOXIDE believed that living organisms
could develop from non living
materials.
1. Obligate Aerobe
● 1590: Hans and Zacharias
- requires an atmosphere containing
Janssen (Dutch lens grinders)
oxygen in concentration
mounted two lenses in a tube to
comparable to that found in room
produce the first compound
air (20-21% oxygen)
microscope.
eg. Mycobacterium an certain
● 1660: Robert Hooke published
fungi
“Micrographia”: drawings and
detailed observations of biological
● Microaerophilic aerobe
materials made with the best
- requires oxygen lower than
compound microscopes and
that found room air (5%
illumination system of the time.
oxygen)
● 1676: Anton van Leeuwenhoek-
first person to observe
2. Anaerobes
microorganisms.
- organisms that do not require
● 1883: Carl Zeiss and Ernst Abbe
oxygen for life and reproduction
pioneered the development in
microscopy (such as immersion
3. Obligate anaerobe
lenses and apochromatic lenses
- anaerobe that grows only in an
which reduce chromatic
anaerobic environment (no
aberration) exist until the present
oxygen).
day.
● 1931: Ernst Ruska constructed
4. Aerotolerant anaerobe
the first electron microscope.
- does not require oxygen and
grows better in the absence of
SPONTANEOUS GENERATION
oxygen but can survive in an
CONTROVERSY
atmosphere containing molecular
oxygen (room air).
- 1688: Francesco Redi (1626-
1678) was an Italian physician who
5. Facultative anaerobe refuted the idea of spontaneous
- capable of surviving either the generation by showing that rotting
presence or absence of oxygen meat carefully kept from flies will
anywhere from 0% oxygen to 20- not spontaneously produce
21% oxygen. maggots.
- 1836: Theodor Schwann (1810-
6. Caphrophytes 1882) helped develop the cell
- bacteria that grows better in the theory of living organisms, namely
presence of increased that all living organisms are
concentrations of carbon dioxide. composed of one or more cells
and that the cell is the basic
functional unit of living organisms.
A BRIEF HISTORY OF - 1861: Louis Pasteur’s (1822-
MICROBIOLOGY 1895) famous experiments with
swan necked flasks finally proved
that microorganisms do not arise
by spontaneous generation. “Koch’s postulates” (1884), the critical
test for the involvement of a
THE GOLDEN AGE OF microorganism in a disease:
MICROBIOLOGY
1875-1914 (ABOUT 50 YEARS) 1. The agent must be present in
every case of the disease.
ROBERT KOCH 2. The agent must be isolated and
- Identified a bacterium as cause of cultured in vitro.
anthrax 3. The disease must be reproduced
- Introduced agar, inoculating loop when a pure culture of the agent is
to transfer bacteria and prepare inoculated into a susceptible host.
pure cultures. 4. The agent must be recoverable
- Introduced “Koch’s postulates” and from the experimentally- infected
the concept that a disease is host.
caused by a single organism. This eventually led to:
- Development of pure culture
JOSEPH LISTER (1865) techniques
- Introduced the “antiseptic - Stains, agar, culture media, petri
technique” dishes
- Use of phenol (carbolic acid) as
disinfectant. WHO PROPOSED THE GERM
THEORY OF DISEASE
MARTINUS BEIJERNICK (1884-1885)
- Discovered “viruses” (toxins, The notion that diseases could be spread
poisons) by “seedlike entities” was first described in
- Infectious agents in tobacco plant the 1500’s by Girolamo Fracastoro and
fluids. were categorized based on how they
could be transmitted. Later, Agostino
PAUL EHRLICH (1910) Bassiin the early 1800’s conducted a
- Introduced concept of series of experiments which demonstrated
chemotherapy that a disease afflicting silkworms at the
- Use of salvarsan for the treatment time were caused by a parasite. Bassi
of syphilis theorized that disease in humans and
animals was also caused by
ALEXANDER FLEMING (1928) microorganisms. Bassi’s work served to
- Discovered the first antibiotic- influence Louis Pasteur, who is accredited
penicillin. with the germ theory of disease following
his experiments
demonstrating the relationship between
microorganisms and disease.
MICROORGANISM AND
KOCH’S POSTULATE DIVISION OF
MICROBIOLOGY
Robert Koch demonstrated the first direct
role of a bacterium in disease. What is a virus?
- a virus is another microorganism humans. There are approximately 10
that caused diseases times as many bacterial cells as human
- A virus is even smaller than cells in the human body. A lot of these
bacteria, it must use a living cell to bacterial cells are found lining the
grow and reproduce digestive system. Some bacteria live in
- A virus can cause colds the soil or on dead plant matter where
- A virus is not a cell they play an important role in the cycling
- Viruses are replicated only when of nutrients. Some types cause food
they are in “living host cell” spoilage and crop damage but others are
- Consist of DNA or RNA core incredibly useful in the production of
- Core is surrounded by a protein fermented foods such as yogurt and soy
coat sauce. Relatively few bacteria are
- Coat may be enclosed in lipid parasites or pathogens
envelope
- Eukaryotes
- Chitin cell walls
- Use organic chemicals for energy
- Molds and mushrooms are
multicellular, consists of mycelia
(composed of filaments called
hyphae)
- Yeasts are unicellular
- Found anywhere on earth Maybe
- Maybe harmful or beneficial
- Live on unlikely materials like
leather and plastics. Beneficial
fungi are important in the
production of cheese, yogurt, beer,
wine and drugs and antibiotics.
Characteristics:
Units of measurement
o When talking about cells and
microscopic organisms, you would be TYPES OF MICROSCOPE
measuring using MICROMETRE
(abbreviated: µ -- micron) or stated as: µm 1. Light Microscope
(micrometer). - Found in most schools,it uses
compound lenses to magnify
- 1 µm = 1 x10−6 meters / 1 x 10 −3 mm objects. The lenses bend or refract
the light, which makes the object
- 1 mm = 1 x103 nanometers / 1 x 103 µm beneath them appear closer.
Staining
Simple stain
- staining with one dye
- mordant may be used to hold the
stain or to coat the specimen to
enlarge it
Differential stain
● Distinguish
- Gram stain
- Acid-fast stain 4 STEPS IN GRAM STAINING
Gram stain PROCESS
● Distinguish 1. Flood the fixed and air-dried smear
- Gram+ve and gram -ve with Crystal Violet (purple dye) for
- Gram +ve bacteria are prone to 30 seconds.
penicillin and detergents 2. Rinse gently with water and cover
- Gram-ve are more resistant to the smear with GramsIodine
antibiotics solution.
3. After 30 seconds, wash off iodine
Acid-fast stain with water and decolorize with
● Stained waxy cell wall is not Ethanol.
decolorized by acid-alcohol 4. Counterstain safranin (a bright red
- Mycobacterium dye) for 1 minute,rinse, dry and
- Nocardia examine under oil
GRAM STAINING
The acid-fast stain is a differential stain
used to identify acid-fast organisms such
as members of
the genus Mycobacterium . Acid-fast
organisms are characterized by wax-like,
nearly impermeable
cell walls; they contain mycolic acid and
large amounts of fatty acids,waxes, and
complex lipids.
Carbol Fuchsin (a bright red dye) is
driven to the bacterial
cell wall with heat so that decolorizing
agent (a mixture of
acid and alcohol) does not remove the red
color from
Mycobacteria, they are said to be ACID-
FAST.
Motility
✔ ability of an organism to move by itself. ✔
Bacterial motility is associated with flagella
(whip-like organelle of motility) or axial
filaments.
✔ Most spiral-shape bacteria and 1 ⁄ 2 of the
bacilli are motile but cocci are generally non
motile.
Growth
✔ Variable depending on the medium.