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Topic 1 - Biological Molecules
Topic 1 - Biological Molecules
Topic 1 - Biological Molecules
STARCH
STRUCTURE OF STARCH:
Chains of a-glucose monosaccharides linked
by 1,4-glycosidic bonds formed by
condensation reactions CELLULOSE
Unbranched or branched chains
Unbranched chains are wound into tight STRUCTURE OF CELLULOSE:
coils that make the molecule very compact Made up of B-glucose monomers
STRUCTURE RELATED TO FUNCTION: Forms straight unbranched chains which
Insoluble so osmotically inactive run parallel to one another
o Does not affect water potential of cells o Allows hydrogen bonds to form cross-
Helical so compact linkages between adjacent chains
o Can be stored in small spaces Cellulose chains are grouped together to
Large so cannot diffuse out of cells form microfibrils which arrange in parallel
Can be highly branched which gives large groups to form fibres
surface area for enzymes to work on STRUCTURE RELATED TO FUNCTION:
o Enzymes can hydrolyse it into a-glucose Long, straight, unbranched chains run
for aerobic respiration parallel to each other
Hydrogen bonds allow formation of cross-
links which provide strength and rigidity to
cell wall
Prevents cell from bursting as water enters
in by osmosis
TERTIARY STRUCTURE
The 3D structure of a protein can be twisted and
folded further to give a specific 3D shape.
This is maintained by multiple different bonds
whose position depend on the primary structure
of the protein.
STRUCTURAL LEVELS OF PROTEINS Disulfide bonds – fairly strong and not easily
The structure of proteins is determined by the broken
order and number of amino acids, the bonding o Form between two cysteines
present, and the shape of the protein. Ionic bonds – formed between any carboxyl
and amino group not involved in peptide
PRIMARY STRUCTURE bond formation
o They are weaker than disulfide bonds and
The primary structure is the sequence of amino
are easily broken by changes in pH
acids in a polypeptide chain. Many amino acid
Hydrogen bonds – numerous but easily
monomers join together in a polymerisation
broken
reaction to form a polypeptide.
The order of amino acids determines a
proteins ultimate shape and thus function
o Lots of the amino acid glycine helps
close packing
TERTIARY: chain is twisted into second helix
QUATERNARY: three of these polypeptide
chains are wound together in a helix
QUATERNARY STRUCTURE
The quaternary structure arises when there is
more than one polypeptide chain.
There can also be prosthetic (non-protein)
groups, such as the iron-containing haem group
in haemoglobin.
FIBROUS PROTEINS
Fibrous proteins form long chains which run
parallel to each other. These chains are linked by
cross-bridges which forms stable molecules.
One example of a fibrous protein is collagen:
PRIMARY: unbranched polypeptide chain
SECONDARY: polypeptide chain is tightly
wound
1.4.2 Enzyme Action
The enzyme is flexible and can mould itself
ENZYMES AS CATALYSTS around the substrate
As the enzyme changes shape, the enzyme
Enzymes are globular proteins that act as
puts a strain on the substrate molecule
catalysts.
This strain distorts a particular bond or
CATALYSTS: substance that can increase the rate bonds in the substrate
of reaction by providing an alternative reaction This lowers the activation energy needed to
pathway with a lower activation energy break the bond and starts the reaction
The induced fit model is the most recent and
ENZYME STRUCTURE widely accepted model of enzyme action.
Since enzymes are globular proteins, they have a
specific 3D shape that is the result of their amino
acid sequence.
The active site is a functional region of the
enzyme.
It is made up of a relatively small number of
amino acids
It forms a small depression within the
LOCK AND KEY
enzyme molecule The lock and key model proposes that the active
The substrate is the molecule on which the site of the enzyme is completely complementary
enzyme acts on. to the substrate and fits the substrate exactly.
It fits into the active site and forms the The active site is a fixed shape and doesn’t
enzyme-substrate complex change
It is held within the active site by bonds that o It is complementary to one specific
temporarily form between certain amino substrate
acids of the active site and substrate After a successful collision, an enzyme-
substrate complex forms leading to a
reaction
This model is old and outdated and has been
refuted by the induced fit model.