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Vol20 Issue3 TheColumn March2024 Europe
Vol20 Issue3 TheColumn March2024 Europe
Vol20 Issue3 TheColumn March2024 Europe
21 H
ow Analytics & Mass Spec Became the Driving
Force Behind Biotherapeutic Drug Development
Kelly Broster, Thermo Fisher Scientific, Waltham, Massachusetts, USA
This
article explores the key challenges analytics and mass
spectrometry solve within the biopharmaceutical industry.
Features
5 The State of UK Separation Science
Tony
Edge and Paul Ferguson, The Chromatographic Society (ChromSoc),
United Kingdom
06 March 2024 Volume 20 Issue 3 What
is the state of separation science in UK and what steps can be taken
to promote the importance of the subject?
9 N
ative Anion Exchange Chromatography Coupled to Mass
Spectrometry for the Charge Variant Analysis of IgG4-based
Monoclonal Antibodies
Ann Marie Rojahn and Dr. Daniel Eßer, YMC Europe, Dinslaken, Germany
The
advantages of a native anion exchange method coupled to mass
spectrometry for charge heterogeneity analysis of immunoglobulin G4
(IgG4)-based mAbs are described.
16 N
ovel Automated Method for Sample Preparation for
Peptide Mapping
Leslie Napoletano, Waters Corporation, Milford, Massachusetts, USA
This
article explores how automation can enhance laboratory productivity
and reduces errors in peptide mapping.
Regulars
2 News
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Catani are the winners of the 17th annual LCGC Lifetime Achievement and Emerging Leader in Peak Scientific Acquires Noblegen
Chromatography Awards, respectively. These awards honor the work of talented separation scientists Dusty TLP Ltd., the owner of Peak Scientific,
at different stages in their career. The awards were presented in February in an oral symposium at
has acquired Wirac Automation Ltd, a company
the Pittcon 2024 conference in San Diego, California. Read Here>>
that trades as Noblegen and specialises in the
design, development, and manufacture of
specialist gas and cryogenic solutions. This is
• Trends in Biopharmaceutical Analysis: Biopharmaceutical analysis is a rapidly evolving field that
the latest step in the Dusty TLP board’s vision
requires the development of new technologies and methods to keep pace with the increasing
TensorSpark - stock.adobe.com
complexity of biologics. One of the most promising areas of research is the use of single-cell omics to expand its portfolio and develop its range of
and microfluidic chips for the analysis of biopharmaceuticals. Read Here>> products to better serve customers around the
world, according to a press release issued by
Peak Scientific.
Noblegen will remain a separate brand
November/December 2023 | Volume 36 Number s10
www.chromatographyonline.com
• Advances in Biopharmaceutical Analysis Supplement: This special issue offers a comprehensive from Peak Scientific, and maintain its own
Advances in
Biopharmaceutical
Analysis
AN LCGC EUROPE SUPPLEMENT
overview of contemporary analytical trends and recent advances in biopharmaceutical analysis, identity. Noblegen will continue to operate
aiming to provide valuable insights into the analytical workflows and characterization strategies independently, with the added support of
associated with biopharmaceutical products and new modalities. Read Here>> the parent company. Paul Hudson, newly
appointed General Manager for Noblegen,
Find podcasts, webinars,
and expert interviews at
chromatographyonline.com
commented, “I am thrilled to take up this
exciting opportunity with the team at
Noblegen to continue bringing their existing
customers the excellent products and
• Biopharmaceutical Perspectives: This short tutorial article is to review the terms and official customer service they have come to expect
nomenclatures for size-exclusion separations and to provide some guidance and recommendations from Noblegen.”
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for practicing chromatographers. The interconversion between the different metrics is explained and Bill Johnston, founder of Wirac Automation Ltd,
some examples are presented. Read Here>>
who will continue working at Noblegen in the role
of Technical Director, added, “I’d like to thank all of
our customers and suppliers who have been part
of the business’s success over the years and I firmly
believe that under the new ownership even greater
Like us Join us Follow Us successes are to be had in the years ahead.”
4
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The State of UK
Separation Science
Tony Edge and Paul Ferguson, The Chromatographic Society (ChromSoc), United Kingdom
in one or two industries to one that is used together and organised a meeting to identify
very widely. However, the UK is no longer where separation science is currently in the UK,
recognised as an innovative research leader and to understand what the future needs of
on the global separation science stage, which industry and academia may be. The first half of
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The Column www.chromatographyonline.com Edge and Ferguson
the meeting looked at the state of separation if there is time left to initiate change. He said
science in research, teaching, and in industry there was also a need for better collaboration
and the second half looked to answer three and networking, as well as a need for HILICON
key questions: consistent regulations and standards to govern iHILIC
®
1. What does industry need in terms of (a) the use of separation science.
Advancing HILIC Separations in UHPLC and HPLC
type and depth of separation science skills Langley also stated that there was a
from graduate and postgraduate recruits, need to better understand and adopt
and (b) separation science technology sustainability and green chemistry, giving
innovation to help it deliver on future the example of sub-2 µm particles and
ambitions and remain competitive? supercritical fluid chromatography (SFC) as
2. Where could UK Research and Innovation ways that chromatographers have had an ®
iHILIC -Fusion ®
iHILIC -Fusion(+)
Silica based Silica based
(UKRI) investment in separation science impact, albeit not by design. He stressed
have the most significant impact in the that it was important to understand where
next 10 years with respect to societal UK separation science fits into the general
challenges and strategic priorities? landscape in the UK, and to also look at other
3. If UKRI were to fund research and countries to see what has happened there.
innovation in separation sciences, which Langley then summarised his presentation ®
iHILIC -Fusion(P)
®
iHILIC -(P) Classic
Polymer based Polymer based
approaches would be the most impactful stating that it was necessary to identify what
and accessible for the community to the destination is for this journey, and also to
engage and co-invest in? identify who to target so that the maximum Zwitterionic charge-modulated amide/diol HILIC
columns
The one day event was kicked off by Melissa return could be sought.
Complementary selectivities for separation of polar
Hanna-Brown, chair of the executive board for compounds
CAMS-UK. Session Two: Do We Still Need Excellent durability and ultra-low column bleeding
Separation Science in the UK? Universal for LC-MS based ”Omics” studies and
other applications
Session One: Setting the Scene The next presenter was Paul Ferguson of
iHILIC®-Fusion and iHILIC®-Fusion(+):
John Langley of the University of Southampton AstraZeneca and ChromSoc, who initially 1.8, 3.5, and 5 µm; pH 2-8
and the RSC SSG was the first speaker and posed the provocative question “Are ® ®
iHILIC -Fusion(P) and iHILIC -(P) Classic:
asked the audience if there is a problem, and separation science specialists relevant in 5 µm; pH 1-10
why should we be looking for a solution now? today’s analytical landscape?” He asked a
He stated that the community needed to series of questions to the audience regarding HILICON AB
understand how separation scientists ended the relevancy of separation science in industry Mail: info@hilicon.com | Web: www.hilicon.com
®
©2024 HILICON AB. All rights reserved. | iHILIC is a registered trademark of HILICON AB, Sweden
up in their current situation, and determine and academia and if the technology could
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The Column www.chromatographyonline.com Edge and Ferguson
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Session Five: Recruiting Separation one of the foremost academic separation and be more vocal about their impact challenges to industry and academia.
Science in the UK scientists in the world, who delivered a and contribution to advancement in other There was time spent analysing what was
Simon England from recruitment company presentation on his reflection on separation scientific areas. not working, but substantially more time
VRS spoke, stating that recruiting separation science in the Netherlands and the formation and effort was spent identifying possible
scientists at a graduate level was the easiest of the Top Institute for Comprehensive Session Seven: Separation Science solutions, and ultimately what separation
as there were plenty of roles to fill, but as Analytical Science and Technology (TI- in Belgium science could do to better the UK economy.
more experience is required, it gets harder COAST), the body on which CAMS-UK The final presenter of the first session was This included highlighting the potential for
to recruit. In general, separation scientists was modelled. Schoenmakers started his Deirdre Cabooter of the University of Leuven, better networking, improved and more
earn less money than other chemists, with presentation by stating that the Netherlands Belgium. The first aspect that she approached dedicated training, and also application
the example of entrance-level computational was small, with many of the separation was the dispersion of universities around the driven research and development to
scientists who earn more than graduate science research groups concentrated in Flanders region of Belgium. She then went support the new challenges that are being
chemists starting roles. Brexit was another Amsterdam. He then went on to describe through the universities and stated that all of set in the many application areas in which
challenge since barriers, specifically visas, TI-COAST and funding mechanisms in The these universities are very close to each other, chromatography is used.
have been put in place restricting movement Netherlands. Schoenmakers did state that as well as having a range of large organisations The organisers are planing to assemble
from Europe, although England did note that getting funding for pure fundamental research including Janssen, Pfizer, Organon, P&G, MSD, the feedback from the participants on
industrial placement and hands-on research is difficult; however, projects would normally GSK and UCB in close proximity. In fact, all of the day with a view to preparing a ‘White
projects added a lot to the attractiveness of a be performed in such a way as to ensure that these organisations are within a 50 km radius. Paper’ outlining the situation for this key
graduate candidate for a separation scientist some fundamental research was undertaken This helps the establishment of collaborations scientific discipline in the UK. This paper
role—however, there were not enough of as part of the project. and setting up industrial placements, and also will be shared with UKRI as the first step in
these being offered. In terms of teaching, in Schoenmakers’ ensures that postgraduates find very well-paid highlighting the importance of separation
opinion 12 h was not enough to teach jobs easily, whilst supporting local industries. science to UK industry, and outline
Session Six: Reflection on Separation separation science, and at Amsterdam Cabooter reviewed research funding opportunities to address the current malaise.
Science in the Netherlands and the they do typically 70 h. He suggested that mechanisms which were not so different from
Formation of TI-COAST universities should advertise the number and the UK, but it was evident that Belgium had Tony Edge is President of The
The initial set of presenters highlighted some types of jobs in industries to encourage more greater success in accessing funding for the Chromatographic Society (ChromSoc).
of the challenges and possible solutions, students to take up chromatography. In terms separation science, along with the potential Paul Ferguson is Honorary Secretary of
however the last two speakers came from of access to instrumentation, he said the access to EU Horizon funding as well. ChromSoc.
environments where these challenges had administrators were more expensive than the
been successfully addressed, and they offered instrumentation, and that he focussed on the Conclusions
some suggestions as to possible ways forward. knowledge that is not available in Google. The morning session highlighted the many E-mail: enquiries@chromsoc.com
.com
The first speaker was Peter Schoenmakers of Schoenmakers also said it was important that challenges that separation scientists face, Website: www.chromsoc.com
www.com
the University of Amsterdam, The Netherlands, separation scientists stop being so modest, as well as the consequences of these
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Native Anion Exchange
Chromatography Coupled
to Mass Spectrometry
for the Charge Variant
Analysis of IgG4-Based
Monoclonal Antibodies
Ann Marie Rojahn and Dr. Daniel Eßer, YMC Europe, Dinslaken, Germany
(1). This stimulates the immune system to ensure the efficacy of mAbs, quality attributes
attack those targets. mAbs are becoming have to be strictly controlled. These include
increasingly important for the treatment charge heterogeneity, which usually arises
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Figure 1: Native AEX–MS charge variant analysis of three different IgG4-based mAbs and
the IgG1-based NISTmAb, shown at basic (B) and acidic (A) variant peaks as well as the main
species (M), 5 μg injection using a non-porous BioPro IEX QF column (2).
Figure 2: Comparison of (a) CEX-TIC and (b) AEX-TIC of an IgG4 mAb (mAb-IV, pI=6.8) using a
strong CEX column, BioPro IEX SF, and the strong AEX column, BioPro IEX QF (2).
from post-translational modifications. Ion available mAbs. They are often IgG1-based
exchange chromatography (IEX) and capillary and possess a high isoelectric point (pI)
electrophoresis (CE) are commonly used to of usually ≥ 8 (3). Therefore, CEX is the
characterize the overall charge heterogeneity. traditional approach; also, coupling of CEX to
Cation exchange chromatography (CEX) mass spectrometry (MS) has been successfully
is an excellent method of characterizing the described (4). In contrast, anion exchange
charge heterogeneity for most commercially chromatography (AEX) has only been used for
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Figure 3: Native AEX–MS analysis of mAb-II (left) and mAb-V (right) before (blue) and after PNGase well as the NISTmAb (pI=9.2) were analysed
F-treatment (black) (2).
(Table 1) using a strong anion exchange column
(SAX) with non-porous particles.
Experimental
Native AEX–MS Method Conditions: The
combination of AEX and MS requires a special
setup in which a stainless-steel T-piece after
the column divides the flow. Most of the
flow is directed to the UV detector, while the
remaining sub-microlitre per minute flow is
Figure 4: Native AEX–MS analysis of the PNGase F-treated and IdeS digested mAb-II Fc fragments directed to the nanoelectrospray ionization
at different temperatures: 25 °C (blue), 35 °C (orange) and 45 °C (red) (2). mass spectrometer (NSI-MS). NSI is used
because it can tolerate high salt concentrations
of up to 600 mM ammonium acetate. To
AZURA® P 8.1L –
further improve the spray stability, isopropanol High Performance
is used as a dopant, modified desolvation gas. UHPLC Pump
In addition to the MS detection, the general
method conditions were kept constant as • Increase sensitivity with ultra-low
dispersion
follows: Flow rate 0.4 mL/min and 10 µg mAb
• Ideal for MS applications
sample injection unless stated otherwise. A
• Performance and reproducibility
non-porous 100 × 4.6 mm, 5 μm strong AEX
without sacrificing robustness
column was used (BioPro IEX QF, YMC). A salt
• Unsurpassed reliability made in
gradient from 10 mM ammonium acetate (pH Germany
6.7 unadjusted) (A) to 300 mM ammonium
visit us at
acetate (B) (pH 6.8 unadjusted) is used to
Please
relatively acidic proteins such as human serum The successful application of an AEX method analyse IgG4-based mAb samples (in-house
albumin (5) or ovalbumin (6). However, for for charge heterogeneity analysis of IgG4-based mAbs from Regeneron).
IgG4-based mAbs, which are becoming more mAbs coupled to MS was achieved by Liu and The gradient started at 0 %B and was held think LC. think KNAUER.
important as therapeutic candidates, AEX colleagues from Regeneron (7). Their approach for 2 min; the ratio of B was then increased
Find out more at
may be an alternative approach. They possess is discussed here: Five different IgG4-based to 100% in 16 min and again held for 4 min. www.knauer.net/UHPLC
a pI < 8 and therefore CEX is less suitable (3). mAbs with different pIs (between 6.1–7.3) as The temperature was set to 45 °C, as a result
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Figure 5: AEX–MS analysis of the PNGase F and IdeS-treated mAb-V Fc fragments (a) without
stress T=0, and (b) thermally stressed (T=6M @ 25 °C) (2).
Make Critical Decisions Faster
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IgG4-based mAbs (Figure 1) as well as to deamidation sites in their CDRs, so these two
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Table 1: Evaluated mAbs in this study. mAbs contain an Asn residue in the Fc region Tris-HCl buffer (pH 7.5) at 37 °C for 90 min to
mAb Type pI of each of the two heavy chains, up to two release the Fc and F(ab’)2 subunits. Since the
mAb-I IgG4 6.1 Asn to Asp conversions can be expected. pI of F(ab’)2 fragments is relatively high, these
Therefore, the mAbs were treated with fragments are poorly retained and are not
mAb-II IgG4 6.6
PNGase F at 1 IUB milliunit per 10 µg sample taken into account further.
mAb-III IgG4 7.3
in 100 mM Tris-HCl buffer (pH 7.5) at 45 °C In contrast to previous results, a lower
mAb-IV IgG4 6.8
for 1 h. temperature of 25 °C showed improved peak
mAb-V IgG4 6.9
Figure 3 shows the differences between the shape and charge variant separation for the
NISTmAb IgG1 9.2 untreated and the PNGase F-treated mAbs Fc fragment analysis compared to analysis at
mAb-II (pI=6.6) and mAb-V (pI=6.9). The higher temperatures, as shown in Figure 4
acidic peaks are probably due to site-specific including partially (B1) and non-glycosylated PNGase F-treatment decreased the pI to 6.4 for mAb-II. Four basic and two acidic variants
deamidation in the fragment crystallizable mAb (B2) species and 1 (B3) or 2 unprocessed for mAb-II and to 6.6 for mAb-V. Due to the can be identified. Both the main peak as well
(Fc) region. The basic variants observed can C-term K (B4) in addition to two acidic peaks. reduced pI, the overall retention as well as as the B1 peak show tailing shoulder peaks,
be identified as unprocessed C-terminal lysine However, A1 consists of a deamidated and the variant separation and peak sharpness are with identical mass to the corresponding peak,
(C-term K) and mAb species with different glycated variant and A2 contains another improved for both mAbs. After the PNGase which could be conformational isomers.
numbers of Fc N-glycans. In addition, the deamidated species. The use of AEX–MS F-treatment of mAb-II, the retention time of In addition to the NG B3 and the PG B1
glycoforms Man5/Man5 with unprocessed probably provides the possibility to separate the FG main species increases by about 1 min peak, B2 is identified as a fully glycosylated
C-term K and G0F/G0F-GlcNAc are observed site-specific deamidation variants. The overall due to the elevated acidity induced by the now species with one unprocessed C-term K while
for mAb-I. mAb-II demonstrates that this separation using AEX–MS is better as the two Asp residues. The retention time of the B4 is identified as a partially glycosylated
AEX–MS method is very sensitive to the method provides sharper peaks and additional PG species B1 shifts by only about 0.5 min, species with one unprocessed C-term K. These
macroheterogeneity of Fc N-glycosylation. The information about the basic variants. while the retention time of the NG species B2 findings were confirmed by peptide mapping.
main fully glycosylated (FG) species is separated remains unchanged. In the case of mAb-V, an
from the partially glycosylated (PG) peak B1 and Further Improvement of the Basic additional minor variant (B1a) can be detected Identification of Site-Specific
the non-glycosylated (NG) species B2, which are Variant Separation and identified as a partially glycosylated species. Deamidations After Thermal Stress
eluted earlier. Since mAbs with a lower pI are better mAb-V was thermally stressed to achieve
separated, a test was performed to see Monitoring Critical Fc Quality Attributes higher levels of deamidation and to facilitate
Comparing AEX–MS and CEX–MS whether the separation can be improved by This AEX–MS method can also be used for fractionation after IdeS digestion and
From the CEX–MS method, two acidic peaks lowering the pI through PNGase F (peptide:N- subunit analysis of mAbs after digestion with deglycosylation. Therefore, mAb-V was
can be observed and identified as deamidated glycosidase F)-mediated deglycosylation. This IdeS (immunoglobulin G-degrading enzyme of incubated at 25 °C for 6 months. The basic
(A1) and glycated (A2) variants (see Figure 2). reaction removes N-glycans and simultaneously Streptococcus pyogenes) protease. The already Fc variants of mAb-V are also assigned to the
No basic peaks were detected. In comparison, converts the glycan-bearing asparagine (Asn) deglycosylated mAbs were treated with IdeS 1 unprocessed C-term K and Fc N-glycosylation
the AEX–MS analysis shows four basic peaks residue to aspartic acid (Asp). Since all IgG4 IUB milliunit per 1 µg mAb sample in 100 mM macroheterogeneity (see Figure 5).
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Novel Automated
Method for Sample
Preparation for
Peptide Mapping
Leslie Napoletano, Waters Corporation, Milford, Massachusetts, USA
If you have been tasked with developing and genetic stability (1). Many scientists
a peptide mapping method to further think of a peptide map as a “fingerprint”
characterize your protein, what is peptide of a protein that provides a comprehensive
mapping and where do you begin? Peptide understanding of the protein being
mapping is the analysis of chemical analyzed (1).
or enzymatic digests of a protein to The entire peptide mapping workflow
focus on specific peptide regions and can be broken down into three major steps:
Quardia Inc.- stock.adobe.com
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being highly laborious, complex, and prone the entire sample preparation method can
to variability. be more than 8 h. These long digestion
Traditionally, there are five key steps times often also introduce artificial
involved in preparing samples for peptide peptide modifications, such as asparagine
mapping: denaturation, reduction, deamidation and methionine oxidation (2).
alkylation, desalting, and digestion. It This process can be laborious and
is easy to imagine the many ways that overwhelming—which is why it is
error and variability could be introduced no surprise that many are looking to
in each step when developing a robust automated processes to streamline this
sample preparation method. Among the work. The use of an automated liquid
considerations that must be evaluated are handler for increasing throughput and
reagent reliability, desalting inconsistencies, alleviating the time spent on routine
digestion completion, and enzyme autolysis. pipetting is of great interest to scientists,
Beyond these, it is important to consider especially for sample preparation for
the time required to perform the peptide complex assays such as peptide mapping.
mapping sample preparation workflow. Historically, this type of automation
Depending on the length of digestion, has proven difficult, requiring large
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Figure 2: High enzyme-to-protein ratios (1:5) are faster, but typically lead to high autolysis. the use of microcentrifuge tube-based 1:5 enzyme:protein ratio with minimal
RapiZyme Trypsin’s unique autolysis resistance and low missed cleavage unlocks efficient 30 min
devices can be more cumbersome and autolysis and low missed cleavages as
digestions versus standard 3 h digestions (using 1:20)
difficult to automate as a centrifuge is shown in Figure 2.
Remicade™ (infliximab) digestion, 1:5 Enzyme: Protein Ratio, 30 min. often required to process the samples.
Cartridge-based desalting devices Method
Trypsin Autolysis (% TIC Response) Missed Cleavage (% TIC Response)
rely on gravity for elution, but use of NIST Monoclonal Antibody (NISTmAb)
6.4%
4.2%
these devices is difficult to automate Reference Material 8671 was digested
and integrate with high-throughput using a comprehensive peptide mapping
workflows. Recent advances in the design kit, PeptideWorks Tryptic Protein Digestion
0.9% and development of desalt cartridges Kit, which includes RapiZyme Trypsin.
0.1%
allow for use of a multichannel pipette NISTmAb reference tryptic digest samples
Leading Competitor RapiZyme Trypsin Leading Competitor RapiZyme Trypsin
in a 96-well stand for ease-of-use and were prepared both manually and with
Digestion details: 37 °C, pH 7.5. Average of n=6 digestion replicates per enzyme vendor – 2 batches of each enzyme, 3 digestion replicates per batch. amenability to automation platforms (4). automation on the Andrew+ Pipetting
Last but not least is the daunting Robot with Extraction+ Connected
task of developing a robust enzymatic Device. NISTmAb samples (10 mg/mL)
investments of both time and money, as prior to digestion (3). Size-exclusion digestion procedure. Trypsin, the most were denatured and reduced in a solution
well as introducing new skill sets such as chromatography (SEC), also known as common enzyme for peptide mapping, containing 5 M guanidine hydrochloride
expertise in Python scripting. However, gel filtration, is a common desalting cleaves proteins on the C-terminal side (GuHCl) and 5 mM dithiothreitol (DTT)
recent advances in the development of mechanism where analytes are separated of lysine and arginine (5). The elevated for 30 min at room temperature.
new, automated solutions with intuitive based on their size in solution. Larger temperature and alkaline pH used in Iodoacetamide (IAM) was then added to
software can enable total, “hands-free” molecular weight analytes pass through tryptic digestions can induce artificial a final concentration of 10 mM and the
solid-phase extraction. the chromatographic bed and are eluted peptide modifications, complicating data samples were incubated for 30 min at
Protein denaturation, reduction, and first while alkylating reagents are trapped analysis (5). Tryptic digestions are further room temperature in the dark. Samples
alkylation are performed to provide the in the pores of the desalting device, which complicated by missed cleavages (under- were desalted with Sep-Pak SEC Desalting
proteolytic enzyme access to digestion allows the larger denatured, reduced, and digestion), non-specific cleavages (over- Cartridges and buffer exchanged with
sites for a more complete digestion (3). The alkylated protein to flow through first, as digestion), and autolysis (when an enzyme digestion buffer (10 mM CaCl2 and 100
most common denaturant used in peptide depicted in Figure 1. starts to digest itself). mM Tris HCl, pH 7.5). The concentration
mapping is guanidine hydrochloride. If Desalting devices can be in a 96-well A novel, autolysis-resistant, homogenously of desalted samples was measured with a
trypsin is used to cleave peptide bonds, plate, microcentrifuge tube, or cartridge methylated recombinant porcine trypsin UV plate reader and normalized to 0.1 mg/
guanidine can significantly interfere with format. While easy to automate, plate- was recently introduced to help overcome mL using the digestion buffer as a diluent.
its activity (3). Therefore, a desalting step is based desalting devices suffer from the challenges in tryptic digestion (6). This RapiZyme Trypsin was added to each
needed to effectively remove the guanidine limited loading capacity. On the contrary, trypsin enables fast 30-min digestions using sample at a 1:5 enzyme:protein ratio and
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Figure 3: Relative abundance of missed and non-specific cleavages for NISTmAb digests prepared
using the manual and automated PeptideWorks. Workflows and a leading immobilized trypsin kit.
Error bars represent one standard deviation. PeptideWorks Tryptic Protein Digestion Kit delivers a
complete and specific digestion.
digestion proceeded for 30 min at 37 °C. on published results and shown in red in
Finally, the reaction was quenched with 1% Figure 3. The digestion kit used yields a 93%
formic acid to a final concentration of 0.1% reduction in missed cleavages and 55%
The International Symposium on
and injected onto the LC–MS system. reduction in non-specific cleavages compared
Chromatography (ISC) represents the oldest
to the immobilized trypsin digest kit (7).
conference series focussing on separation
Results BPI chromatogram overlays of NISTmAb
Figure 3 displays the relative missed and non- digests prepared using the manual and science. ISC symposia have been organised since
specific cleavage results for NISTmAb digests automated workflows (left) and the relative 1956 in each even year. ISC is internationally
prepared using manual and automated. The abundance of select peptide modifications recognised as one of the premier meeting series
automated workflow used delivers NISTmAb for three batches (right) on the pipetting
isc2024.org for discussion of all modes of chromatography
digests with less than 5% missed and non- robot are shown in Figure 4. These results and separation science with a broad coverage of
specific cleavages, indicating high digestion show that a comprehensive peptide techniques and applications.
Photos ©Marketing Liverpool
efficiency without over-digestion of the mapping kit provided fast tryptic digests
protein. Missed and non-specific cleavage without sacrificing digestion completion To sponsor, exhibit or for more information,
results for NISTmAb digests prepared using or inducing high levels of method-induced please contact isc2024@sasevents.co.uk
an immobilized trypsin digest kit are based deamidation or oxidation. The optimized
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Figure 4: The relative abundance of select peptide modifications determined by LC–MS for three 2. Jiang, P.; Li, F.; Ding, J. Development of an Shiner, S., Trudeau, M. Quick and Robust
batches of NISTmAb digests prepared using the automated PeptideWorks Workflow. Results and
Efficient LC–MS Peptide Mapping Method Sample Preparation for Tryptic Peptide Mapping
BPI chromatograms for NISTmAb digests prepared with the manual workflow are also shown
to demonstrate consistency between the manual and automated sample preparation. Error bars Using Accelerated Sample Preparation for with the PeptideWorks Kit using Simple,
represent one standard deviation. Monoclonal Antibodies. J. Chromatogr. Automatable Workflows; Waters Application
B 2020, 1137, 121895. DOI: 10.1016/j. Note 720008019; Waters Corporation: Milford,
Manual Sample Prep
jchromb.2019.121895 MA, 2023. https://www.waters.com/nextgen/
3. Mouchahoir, T.; Schiel, J. E. Development of us/en/library/application-notes/2023/quick-
an LC–MS/MS Peptide Mapping Protocol for robust-sample-preparation-fortryptic-peptide-
the NISTmAb. Anal. Bioanal. Chem. 2018, 410, mapping-with-the-peptideworks-kit-using-
Automated Sample
Prep 2111–2126. DOI: 10.1007/s00216-018-0848-6 simple-automatable-workflows.html (accessed
4. Sep-Pak SEC Desalting Cartridges, 1cc 5K 2024-02-20).
MWCO Care and Use Manual. Waters User
Manual 720007983EN; Waters Corporation: Leslie Napoletano is a Principal Product
Milford, MA, 2023. https://www.waters.com/ Marketing Manager within Waters
automation protocol generates reproducible productivity and reduce errors, especially webassets/cms/support/docs/720007983en.pdf Consumables & Lab Automation Group.
results over time and provides an increase in in a labor-intensive method, such as (accessed 2024-02-21). She has been with Waters since 2012
productivity with simple, robust automation peptide mapping. 5. Ren, D.; Pipes, G. D.; Liu, D.; et al. An Improved providing support and education to
alleviating potential pipetting errors (5). Trypsin Digestion Method Minimizes Digestion- scientists in New Jersey with Waters
Acknowledgment Induced Modifications on Proteins. Anal. chemistry consumables. More recently
Conclusion Special thanks to Bill Warren, Caitlin Hanna, Biochem. 2009, 392 (1), 12–21. DOI: 10.1016/j. in 2021, Leslie has moved into the
Developing a robust sample preparation Meagan Callis and Stephan Koza for your ab.2009.05.018 Product Marketing group focusing on
method for peptide mapping can be contributions. 6. Ippoliti, S.; Zampa, N.; Yu, Y. Q.; Lauber, M. bringing on new consumable products
laborious and filled with many variables. A. Versatile and Rapid Digestion Protocols for protein characterization. Prior to
Faster digestions often yield incomplete References for Biopharmaceutical Characterization joining Waters, Leslie worked as a
digests with additional autolysis species 1. USP. Biotechnology-Derived Articles–Peptide Using RapiZyme Trypsin; Waters Application scientist in protein characterization
making data analysis more complex. Mapping <1055>; USP32–NF27 Page 496, Note 720007840; Waters Corporation: in the pre-clinical development of
Peptide mapping can be streamlined Interim Revision Announcement: USP32–NF27 Milford, MA, 2023. https://www.waters.com/ monoclonal antibodies at Merck and
using a comprehensive kit with lot tracible No. 1 Page 41, Pharmacopeial Forum: Volume nextgen/us/en/library/application-notes/2023/ prior to that at Teva as a R&D chemist.
reagents and a novel autolysis-resistant No. 32(2) Page 571; Rockville, MD, 2016. versatile-and-rapid-digestion-protocols-for-
high purity trypsin allowing for high- https://www.usp.org/sites/default/files/usp/ biopharmaceutical-characterization-using-
E-mail: Leslie_Napoletano@waters.com
efficiency 30 min digestions. The use of document/harmonization/biotechnology/b05_ rapizyme-trypsin.html (accessed 2024-02-21). Website: www.waters.com
automation can further enhance laboratory pf_ira_35_1_2009.pdf (accessed 2023-12-11). 7. Hanna, C. M.; Danaceau, J. P.; Koza, S. M.;
20
21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
How Analytics and
Mass Spec Became the
Driving Force Behind
Biotherapeutic
Drug Development
Kelly Broster, Thermo Fischer Scientific, Waltham, Massachusetts, USA
In the dynamic world of biopharmaceutical allowing them to delve deeper into the
discovery and development, scientists structural intricacies of biotherapeutic proteins
are constantly striving to advance their and create new drugs.
understanding of therapeutic proteins. These innovations empower laboratories to
paisorn - stock.adobe.com
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21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
The Column www.chromatographyonline.com Broster
drug development process. This article will dive development, pharmacokinetics, and process
into the critical role that analytics and mass monitoring. Its high sensitivity, specificity,
spectrometry play in addressing key challenges and ability to handle complex samples make
within the biopharmaceutical industry. it indispensable in the biopharmaceutical powered by
industry. As drug development techniques
GC OPERATOR
The Evolution of Mass Spectrometry advance and quality control demands increase,
in Drug Development mass spectrometry’s role in later stages of
Traditionally, mass spectrometry was primarily development will only increase and become
associated with the early stages of drug more critical. The fundamental concepts of GC explained. From system set-up to shutdown.
discovery and was commonly used to assess
the purity of raw materials and identify Real-Time Insights and Enhanced • How to set-up a GC system SCAN HERE
FOR MORE
compounds of interest. Quality Control • Basics of the chromatographic process
However, the pharmaceutical landscape The technology behind mass spectrometry • Sample introduction
has undergone a seismic shift in recent not only aids in compound identification but
• Columns and temperature programming
years and laboratories now recognize the also offers real-time insights into the stability
• Measuring and optimizing chromatographic parameters
importance of mass spectrometry throughout and degradation of pharmaceutical products
drug development. It is no longer confined throughout the drug development journey.
to the initial stages but is integral to quality Continuous monitoring allows laboratories
control and safety assessments at every step, to detect deviations from specifications
and has become the driving force behind promptly, ensuring the final product adheres
biotherapeutic drug development and is to regulatory standards at all stages. This
enhancing quality by design (QbD). real-time monitoring capability accelerates
Mass spectrometry is an invaluable tool in research and development timelines,
the rapid identification and characterization of enabling laboratories to make informed
compounds and has been since its inception decisions based on accurate data. Speed-to-
in the early 20th century. The technique’s market advantages are particularly crucial in
high-resolution capabilities empower early- addressing urgent medical needs, such as
stage laboratories to analyze complex samples during the COVID-19 pandemic.
with unparalleled accuracy. It plays a vital Mass spectrometry’s sensitivity and
role in biopharmaceutical development and specificity make it a reliable method for www.chromacademy.com/gc-operator
manufacturing by providing detailed insights safeguarding product integrity and upholding
into protein structure, quality control, biosimilar the reputation of drug manufacturers for
22
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The Column www.chromatographyonline.com Broster
biotherapeutics. The importance and value spectrometry is their ability to uncover ultra- throughout the development demands, analytics and mass spectrometry
of mass spectrometry for biotherapeutic low-level modifications in biotherapeutic process is a paramount concern in accelerate the development process while
development is demonstrated by the work drugs. These modifications, which were biopharmaceuticals. Analytics and mass ensuring drug efficacy and patient safety. The
of the MAM Consortium, an industry-wide, previously challenging to detect, can spectrometry can facilitate quality integration of these tools into the entire drug
nonprofit organization with the mission to now be identified with precision. This control and offer real-time insights development journey enables pharmaceutical
advance multi-attribute method (MAMs) and capability provides invaluable insights into to promptly address deviations from companies to stay competitive and deliver
other LC–MS applications in pharmaceutical the structural integrity and stability of required specifications, allowing for safe and effective medications to patients
and biotechnology companies for product therapeutic proteins, enhancing the overall greater consistency and reliability in more swiftly than ever before.
characterization, in-process control, and GMP quality of drug candidates. product quality. As the biopharmaceutical industry continues
release and stability testing (1). Additionally, analytics and mass • Regulatory Demands: The to evolve, analytics and mass spectrometry
spectrometry enable researchers to pinpoint biopharmaceutical industry operates will remain indispensable, paving the way for
Reducing Contamination Risk and site-specific CQAs in biotherapeutic drugs. in a highly regulated environment. groundbreaking discoveries and innovations in
Regulatory Compliance This granular information is essential for Meeting regulatory demands is essential the field of biotherapeutic drug development.
Mass spectrometry is well aligned to help ensuring drug efficacy and patient safety. for bringing new therapies to market. There is still enormous untapped potential
pharmaceutical companies comply with By identifying specific attributes that may Analytics and mass spectrometry aid in to be realized for the implementation of
regulatory requirements, as the technology impact a drug’s performance, scientists can compliance by providing robust data mass spectrometry in biopharmaceutical
provides robust analytical data. This data make informed decisions and refine drug and documentation required for development and manufacturing that will
encompasses drug purity, acceptable dosage development strategies. Mass spectrometry regulatory approval. bring life-changing treatments to the
levels, and the necessary documentation enables another critical level of information market faster.
required as therapies progress from research through the process of building quality in A New Era in Biotherapeutic Drug
to clinical application. The inclusion of each design step of the drug development Development Kelly Broster, PhD, is Senior Manager
mass spectrometry at all stages of drug process. Key challenges it addresses include: In the ever-evolving landscape of of Pharma & Biopharma Market
development significantly impacts the • Structural Complexity: Biotherapeutic biotherapeutic drug development, analytics Development and Collaborations
transition time from laboratory research to drugs are inherently complex, and and mass spectrometry have emerged as at Thermo Fisher Scientific.
clinical applications, ensuring adherence understanding their intricate structures the driving force behind structural insights
to regulatory standards throughout is vital for drug development. Analytics and quality control. These technologies Reference
the process. and mass spectrometry provide the tools empower researchers to uncover ultra-low- 1. MAM Consortium. https://mamconsortium.org
needed to navigate this complexity, level modifications, identify site-specific (accessed 2024-03-04).
Analytics and Mass Spectrometry as allowing scientists to unravel the nuances critical quality attributes, and navigate the
Biotherapeutic Game Changers of these molecules. complexities of biotherapeutic molecules. By E-mail: Kelly.broster@thermofisher.com
One of the remarkable achievements of • Quality Control & Consistency: addressing key challenges, such as structural Website: www.thermofisher.com/uk/
en/home.html
biopharmaceutical analytics and mass Maintaining rigorous quality control complexity, quality control, and regulatory
23
21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
Rapid Method
to Characterize
Adeno-Associated
Virus (AAV) Therapies
Using SEC–FLD
Tran Pham, Phenomenex, Torrance, California, USA
Adeno-associated virus (AAV) gene therapies and robustness for AAV analysis. These
have created analytical challenges for drug advances can enable researchers to make
developers. Current technologies and critical analytical decisions with confidence and
consumables are not well-suited for the already ultimately, ensure drug time-to-market.
low sample volume used to determine the The rapid growth of AAV gene-based
Dr_Microbe - stock.adobe.com
critical quality attributes (CQAs) of AAVs. New therapies is catalyzed by several factors such
tailored chromatography methods with novel as AAVs’ wide range of tropism for increased
pore and column dimensions and inert particle personalized medicine efficacies and their
chemistry demonstrate increased efficiencies ability to carry large amounts of genome (the
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21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
The Column www.chromatographyonline.com Pham
the analytical challenges of this small-volume, processing, formulation, and storage conditions.
Figure 1: Zoomed-in chromatograms of AAV serotypes on a Biozen 3 µm dSEC-7, 300 × 4.6 mm
column demonstrating consistent recovery of AAV monomer and impurities across tested serotypes. advanced therapeutics industry. The gold standard for AAV aggregate analysis
The good news is that chromatographic has long been analytical ultracentrifugation
3 10 consumables and solutions are rapidly (AUC). However, AUC requires sample sizes up
4
2.5 8
3
evolving to address these unmet needs while to 400 mL, takes an average 90 min of run time
0
6
maintaining, or even increasing, data quality. to complete, and has a high learning curve.
LU
LU
LU
1.5 2
4
1 1 Coupled with existing instrumentation, these Size-exclusion chromatography (SEC) is
2
0.5
0 0
0
different approaches enable the analysis of recognized as an orthogonal method to
3
2 3 4 5 6
Time (min)
7 8 9 2
3
3 4 5 6
Time (min)
7 8 9
2
2 3 4 5 6
Time (min)
7 8 9
multiple AAV critical quality attributes (CQAs), AUC and is more efficient. On average, AAV
2.5 2.5
1.75 which help to mitigate sample consumption. aggregate analysis with SEC consumes only
1.5
2 2
1.25 These approaches ultimately increase AAV about 20 μL of sample, and analysis for one
LU
LU
LU
1
drug development efficiencies and ensure sample can be completed in as little as 14 min.
1.5 1.5
0.75
1 1
0.5 0.5
0.5
0.25
time-to-market. But this is still not ideal. Researchers are seeking
2 3 4 5 6
Time (min)
7 8 9 2 3 4 5 6
Time (min)
7 8 9 2 3 4 5 6
Time (min)
7 8 9 to achieve faster turnaround times for analysis
1 1.2
0.9 Improving Aggregate Analysis while consuming even less sample volume—all
1
0.8
0.7 0.8
The most intense and high volume of analysis without compromising data quality.
LU
LU
0.6
0.5 0.6
occurs during the AAV characterization stages. Current SEC technology research is proving
0.4
0.3
0.4 Early comprehension of the vector’s CQAs is that an inert, 700 Å pore size particle provides
0.2
2 3 4 5 6 7 8 9
0.2
2 3 4 5 6 7 8 9
critical for drug candidate selection as well robust and reliable baseline separation
Time (min) Time (min)
as for process and formulation development between monomer and aggregate, as well as
and optimization. Robust and reliable better peak identification between aggregates.
drug) to ensure dosing optimization. Currently, Common chromatographic methods used for analytical methods used to characterize AAVs Coupled with smaller inner diameters, an SEC
there are more than 235 AAV therapies in established modalities such as monoclonal are therefore required. The importance of column with these dimensions holistically
various clinical trial phases, and twelve AAV- antibodies (mAbs) are applicable to analyzing robustness and reliability of these methods mitigates high sample consumption without
based therapies have been approved since AAVs. The problem is that the manufacturing is even further emphasized when “fit-for- sacrificing data analysis efficiency and quality of
2012. The global market for AAVs, currently scale of viral vectors is a lot smaller than it is purpose” consumables are used. AAV aggregate analysis.
estimated to be worth more than $767.7 for mAbs. The AAV preclinical manufacturing An essential CQA of AAVs is aggregate
million, is expected to expand at a compound sizes range from hundreds of microliters to 50 identification and quantification. Aggregation Demonstrating an Optimized SEC
annual growth rate of 22.5% through 2030 (1). L, while mAb production volumes have typically can cause AAV-based therapeutics to lose Column for AAV Analysis
With this growth comes significant challenges been over 500 L. Some consumables are not efficacy or impact immunogenicity, which Research was performed in 2023 on AAV
to ensure the viral vectors’ efficiencies currently optimized to handle smaller volumes. negatively impacts drug and patient safety. serotypes 1, 2, 3, 4, 5, 6, 8, 9 and rh10 using
throughout the drug development stages. Therefore, there is an unmet need to support Aggregation is often driven by suboptimal a Biozen 3 µm dSEC-7 (Phenomenex). Two
25
21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
The Column www.chromatographyonline.com Pham
column dimensions were tested: 150 × 4.6 with the achievable resolution demonstrated heat exposure, the smaller species decreased, References
mm and 300 × 4.6 mm. For AAV8-CMV- that a suitable particle size was chosen. resulting in more of the largest species. 1. Adeno Associated Virus Vector Manufacturing
GFP, five samples at concentrations ranging The column was found to be suitable for Market Size, Share & Trends Analysis Report By Scale
from 2×1011 viral genomes per mL (vg/mL) separating the monomer from its aggregates Conclusion Of Operations (Clinical, Commercial), By Method, By
to 2×1012 vg/mL were prepared in 0.2 μm and impurities for serotypes 1, 2, 3, 5, 6, The analytical capabilities of SEC columns Application, By Therapeutic Area, By Region, And
filtered 1x phosphate buffered saline with 8, 9 and rh10 with a 5-microliter injection specifically designed for AAVs have been Segment Forecasts, 2023 - 2030. Adeno Associated
0.001% Pluronics F68 into HPLC vials. For volume. Different serotypes displayed demonstrated. This technology, with its optimized Virus Vector Manufacturing Market Report,
serotype AAV studies on the 300 × 4.6 mm different retention times (Figure 1). Resolution column and pore sizes, promotes reproducible 2030. Grand View Research, 2023. https://www.
column format, separate dilutions of 4×1011 between monomer and aggregate remained separations and recoveries for various AAV grandviewresearch.com/industry-analysis/adeno-
vg/mL were prepared and centrifuged at consistent when the volume was increased serotypes. An SEC method coupled with a associated-virus-vector-manufacturing-market-report
10,000 relative centrifugal field for 5 min prior to 10 μL Therefore, doubling the viral load fluorescence detector (FLD) using a 150 × 4.6 mm (accessed 2024-03-04).
to injection on the LC system (Agilent 1260 on the 300 × 4.6 mm column did not column can be completed in 8 min at a flow rate
Infinity with Agilent FLD and UV). affect the percentage of monomer recovery of 0.5 mL/min per on a normal HPLC system. As Tran Pham is a Global Market
determination. It is possible that even higher a result of the reproducible analytical performance Development Manager for BioPharma at
Results and Discussion resolution separations could be achieved of this column, it could be used for stability studies Phenomenex. She has more than 15 years
The study demonstrated that the SEC using a 300 × 4.6 mm format and a flow rate to determine the purity and quantity of the of industry experience that encompasses
technology produced highly reproducible of 0.25 mL/min. monomer left in the solution. It can also enable analytical development, training, sales,
peak areas, retention time, and percentage The study also demonstrated that the SEC the determination of the critical quality attributes in and marketing.
monomer. The running pressures for the 150 column could be used to examine the effects drug substances and drug products. Furthermore,
× 4.6 mm and 300 × 4.6 mm columns at a of forced degradation on AAVs. Upon exposing it could be used to drive the development of other
E-mail: tranp@phenomenex.com
flow rate of 0.5 mL/min were 78 and 155 bars, AAV1 to heat, two new hydrodynamically analytical methods such as AAV capid load and Website: www.phenomenex.com
respectively. These running pressures combined larger species were formed. With continued titer quantity as well as IgM aggregation.
26
21 Broster 24 Pham 27 HPLC 2024 Preview 29 Training and Events
HPLC 2024 Preview
A look what’s in store for chromatographers who attend HPLC 2024
in Denver, Colorado from 20–25 July 2024.
nucleic acid separations and detection, to HPLC and his strong interest in fostering
proteomics, glycomics, and of course careers of young scientists and engineers
multi-omics will be discussed. working in the field of separation science.
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scientists that have made and continue best video in which authors present the instrumentation. Don’t miss the conference HPLC 2024 and Distinguished
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field of separation science, in honor of the Please see the conference website for more Registration for the conference is of Chemistry and Biochemistry,
legacy of Uwe D. Neue, late scientist and details on each of these. open and we are accepting abstracts for Ohio State University, Ohio, USA.
Waters Corporate Fellow. Awards for the Join us in the mile high city where HPLC presentations. Look for more details on our
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Finally, the HPLC Tube competition is a Take part in unique opportunities for org. I look forward to LCGC readers joining
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