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Arroz A PHB 2
Arroz A PHB 2
Arroz A PHB 2
Received: 6 February 2016 Revised: 16 March 2016 Accepted article published: 8 April 2016 Published online in Wiley Online Library:
Abstract
BACKGROUND: Rice husks (RH) are agricultural residues with abundant storage of cellulose and hemicellulose, making them
a potential feedstock for polyhydroxyalkanoate (PHA) production. In this study, optimization of pretreatment with alkali
under various conditions was performed before enzymatic hydrolysis using Celluclast 1.5 L (EC 3.2.1.4) and Novozyme 188 (EC
3.2.1.21). The hydrolysate was fed to two strains, Burkholderia cepacia USM (JCM 15050) and Cupriavidus necator NSDG-GG, an
engineered strain of Cupriavidus necator H16, to evaluate their PHA production.
RESULTS: Pretreatment of RH using 1.0 mol L−1 potassium hydroxide (KOH) at high temperature and pressure (HTP) (121 ∘ C, 0.1
MPa) gave maximum sugar yield of up to 87% (per total carbohydrate content) after optimized enzymatic hydrolysis, whereby
the undiluted hydrolysate contained approximately 20 g L−1 total reducing sugars (TRS). B. cepacia USM utilized the hydrolysate
more efficiently compared with C. necator NSDG-GG, with a maximum cell dry weight (CDW) of 4.9 g L−1 and 40 wt% PHA at
shake-flask scale. The CDW and PHA content of B. cepacia USM cultivated in a 5 L fermentor were 7.8 g L−1 and 50%, respectively.
The decrease in total phenolics at the end of fermentation suggested that B. cepacia USM was able to metabolize phenolic
compounds.
CONCLUSION: Through optimized alkali pretreatment and enzymatic hydrolysis, RH has the potential to be converted to PHA by
B. cepacia USM, thus valorizing this agricultural by-product.
© 2016 Society of Chemical Industry
stable and recalcitrant, making conversion of biomass to fer- duration for each pretreatment, the mixture was filtered and the
mentable sugars a challenging endeavor. As such, additional solid fraction was washed thoroughly with distilled water until
processes to pretreat the biomass are required to make the sugars the pH was approximately 7.0 ± 0.5. The washed solid fraction
more accessible. Among the many pretreatment methods that was then oven-dried until all excess moisture was removed. The
have been tested, alkali pretreatment has been extensively stud- efficiencies of each pretreatment were evaluated based on total
ied, mostly owing to its ability to remove large quantities of lignin reducing sugar yield after enzymatic hydrolysis, expressed based
from biomass.4 on the total carbohydrate content in the untreated raw material.
Rice husks (RH) are a type of residual agricultural biomass,
obtained from the rice milling process as the paddy is converted Thermogravimetric analysis (TGA)
to rice. The RH account for up to 20% of the paddy harvest.5 Rice
Thermogravimetric analysis (TGA) was performed using TGA7
is one of the largest food sources in the world. According to the
thermoanalyzer (Perkin-Elmer, United States). Approximately
Food and Agricultural Organization of the United Nations (FAO),
10 mg of dry RH samples were heated from 30 ∘ C to 920 ∘ C under
the worldwide paddy production has been increasing at a steady
continuous N2 flow at a heating rate of 20 ∘ C min−1 . The differ-
rate each year since 2002.6 Paddy production in Malaysia was 2.5
ences in composition of the RH samples were taken based on
million tonnes in 2010 and rose to more than 2.6 million tonnes
percentage weight loss at specific ranges of temperature.
in 2014.7 The increasing amount of RH generated presents a
problem in disposal management. Incineration of the rice residues
appeared to be the most common method of disposal in Southeast Enzymatic hydrolysis
Asian countries, with only a small amount being used as fuel.8 The alkaline-pretreated RH were used as substrates for enzymatic
Development of a proper and sustainable method of agricultural hydrolysis. In the initial evaluation of RH pretreatment under var-
waste management is crucial to address the environmental issues ious conditions, only Celluclast 1.5 L (Novozyme, Denmark) was
caused by incineration. One possible method is to convert the used at an enzyme loading of 5.0% (v/v) with substrate loading
polysaccharides present in the RH into fermentable sugars. of 5.0% (w/v). The RH pretreated under optimum conditions was
The present study was aimed at production of PHA from sugars then selected as the substrate for further experiments on enzy-
present in RH through a systematic three-step process. The RH matic hydrolysis. Optimized enzyme loading of Celluclast 1.5 L and
were first pretreated with alkali under different conditions to Novozyme 188 (Novozyme, Denmark) was 1.0% (v/v) and 0.25%
determine the combination method which results in highest sugar (v/v), respectively, with substrate loading of 2.5% (w/v) (refer to
yield upon enzymatic hydrolysis. The potential of the hydrolysate Supporting information). A 0.05 mol L−1 citrate buffer (pH 4.8) was
as a feedstock for bacterial synthesis of PHA was evaluated based used for all enzymatic reactions. The reaction mixture was incu-
on cell biomass and PHA accumulation in two selected strains, B. bated at 50 ∘ C with agitation at 160 rpm for 72 h. At the end of
cepacia USM and C. necator NSDG-GG. The strain showing the most incubation, the reaction mixture was filtered through a What-
efficient utilization of the hydrolysate was used for fermentation man No.1 filter paper to separate the solid substrate and enzy-
to investigate the possibility of scale-up PHA production on this matic hydrolysate. The hydrolysate was then filtered through a
carbon source. 0.2 μm cellulose acetate membrane filter using vacuum filtration
to remove smaller particles. Sterilization of the hydrolysate prior
to use in bacterial cultivation was performed at 121 o C and 0.1 MPa
EXPERIMENTAL for 15 mins using hydrolysates with pH 4.8 and pH 7.0 to observe
Raw material the effect of pH on the composition of sugars. Based on the results,
The RH used in this study was obtained from Kim Thye Leong the hydrolysate for all subsequent biosynthesis experiments was
Rice Mill Sdn. Bhd., Kepala Batas, Pulau Pinang, Malaysia. The RH autoclaved at pH 4.8.
was washed with tap water, sun-dried, and kept in plastic bags
at room temperature until further use. Compositional analysis of Microorganisms
the untreated RH was carried out following the protocols of the The bacterial strains used in this study were B. cepacia USM
National Renewable Energy Laboratory (NREL).9 (JCM 15050), isolated from wastewater polluted with oil10 and
C. necator NSDG-GG. The strain NSDG-GG is a glucose-utilizable
Alkali pretreatment engineered strain of the wild strain H16, having modifications in
nag operon and replacement of phaC by a mutant gene phaC
For all pretreatment experiments, the solid loading of the RH was
derived from Aeromonas caviae on the chromosome.11,12 The cells
kept constant at 6% (w/v). The concentrations of alkali used were
were maintained on nutrient rich (NR) medium with 25% glycerol
0.1 mol L−1 and 1.0 mol L−1 for both sodium hydroxide (NaOH) and
at −80 ∘ C.
potassium hydroxide (KOH). Three different pretreatment condi-
tions were tested; room temperature (RT), microwave irradiation
(MI), and high temperature and pressure (HTP). The mixture of Media
RH and alkali was agitated at a speed of 200 rpm for 24 h at RT The composition of the NR medium (pH 7.0) was as follows (per
(26 ± 4 ∘ C). Pretreatment using a combination of alkali and MI was L): 10 g meat extract, 10 g peptone, and 2 g yeast extract. The
performed by placing a mixture of RH and alkali in a tabletop mineral salts medium (MM) composition (pH 7.0) for B. cepacia
microwave oven (LG Electronics, South Korea). The microwave fre- USM was as follows (per L): 3.32 g Na2 HPO4 , 2.8 g KH2 PO4 , 0.25 g
quency was 2450 MHz and the power was set at 700 W. The pre- Mg2 SO4 ·7H2 O, and 1 mL trace elements.13 The trace elements
treatment duration was kept constant at 15 mins. Pretreatment solution contained (per L): 0.22 g CoCl2 ·6H2 O, 9.7 g FeCl3 , 7.8 g
using a combination of alkali and HTP was performed in an auto- CaCl2 , 0.12 g NiCl2 ·6H2 O, 0.11 g CrCl3 ·6H2 O, 0.16 g CuSO4 ·5H2 O
clave unit (Hirayama, Japan), whereby the mixture of RH and alkali in 0.1 N HCl.14 For C. necator NSDG-GG, the composition of MM
was pretreated at 121 ∘ C and 0.1 MPa for 15 mins. After the set (pH 6.8) was as follows (per L): 4.0 g NaH2 PO4 , 4.6 g Na2 HPO4 , 0.45 g
K2 SO4 , 0.39 g Mg2 SO4 , 0.062 g CaCl2 , and 1 mL trace elements. Dionex CarboPac PA-20 analytical column attached to a Dionex
The trace elements were composed of (per L): 15 g FeSO4 ·6H2 O, CarboPac PA-20 guard column (Thermo Fisher Scientific, United
2.4 g MnSO4 ·H2 O, 2.4 g ZnSO4 ·7H2 O, and 0.48 g CuSO4 ·5H2 O in States). The mobile phase was 0.75 mmol L−1 NaOH with the flow
0.1 N HCl.15 Ammonium chloride (NH4 Cl) and urea were used as rate of 0.5 mL min−1 . The column was regenerated at the end of
nitrogen sources and tested at varying concentrations. In control each cycle with 200 mmol L−1 of NaOH for 4 min. The flow rate was
experiments, pure glucose was used as carbon source and was the same for regeneration.
fed at a concentration of 20 g L−1 . For biosynthesis experiments
using RH hydrolysate, the hydrolysates containing approximately Determination of cell dry weight (CDW)
20 g L−1 total reducing sugars (TRS) were used in place of MM and
The cells were harvested by centrifugation at 8000 rpm for 10 min
either NH4 Cl or urea was added as nitrogen source, and adjusted
at 4 ∘ C. The cells were washed twice with distilled water and frozen
to pH 7.0 for B. cepacia USM and pH 6.8 for C. necator NSDG-GG
overnight at −20 ∘ C. The cells were then lyophilized and the weight
prior to inoculation. The pH for all media was adjusted using
of the dried cells was determined.
hydrochloric acid (HCl) or sodium hydroxide (NaOH).
100
Table 1. Composition of the RH used in this study
90 (A) Untreated
Component Composition (%) (B) 1 M NaOH/HTP
80
(C) 1 M KOH/HTP
Total solids* 92.6 70
Structural carbohydrates* Cellulose 34.7
Weight (%)
60
Hemicellulose 17.4
Total 52.1 50
Lignin* Acid soluble lignin 2.3 40
Acid insoluble lignin 23.2 30 (A)
Total 25.5
20 (B)
Ash* 15.0
10 (C)
Moisture* 7.4
Extractives Water extractives 7.2 0
Alcohol extractives 2.0 30 100 200 300 400 500 600 700 800 900
Total 9.2 Temperature (°C)
*Values for each of the components were calculated on an Figure 2. TGA thermograms of untreated RH, RH pretreated with
extractives-free basis. 1.0 mol L−1 NaOH/HTP, and RH pretreated with 1.0 mol L−1 KOH/HTP. The
temperature was increased from 30 ∘ C to 900 ∘ C at a heating rate of
20 ∘ C min−1 .
80
h
RT
Yield of total reducing sugars (%)
Figure 3. HPAEC chromatogram of monosaccharides detected in the RH hydrolysate before and after heat sterilization at pH 7.0.
Table 3. Growth and PHA accumulation of Burkholderia cepacia USM (JCM 15050) and Cupriavidus necator NSDG-GG on glucose or RH hydrolysate
supplemented with 0.54 g L−1 urea
Table 4. Growth and PHA accumulation of Burkholderia cepacia USM (JCM 15050) on glucose and RH hydrolysate supplemented with different
nitrogen sources
Carbon source* Nitrogen source** CDW (g L−1 ) PHA content (wt%) Total PHA (g L−1 )
were similar to that of RH pretreated with alkali and HTP. Thus, the this problem can be overcome by using robust strains that are
thermogram of RH pretreated with HTP was used as a represen- able to utilize a wide range of compounds. Burkholderia cepa-
tation. It was interesting to note that the residue from KOH/HTP cia USM has been reported to be a nutritionally-versatile strain,
pretreated RH was the lowest, which indicated that more lignin as it is able to grow on a variety of sugars and oils.10 In the
and silica were removed with this combination of pretreatment present study, the CDW increased when the cells were cultivated
compared with NaOH/HTP. This could explain the increase in sugar on RH hydrolysate compared with pure glucose, indicating that
yield from RH pretreated with KOH/HTP, as the removal of higher other components in the hydrolysate such as citrate were metab-
amounts of lignin and ash could have enhanced the accessibility of olized by B. cepacia USM and were capable of promoting cell
enzymes to the carbohydrates. Thus, the results suggest that KOH growth.
is more effective in delignification compared with NaOH. The phenolic compounds detected in the hydrolysate could have
Characterization of the hydrolysate was an important aspect of a negative effect on the growth of C. necator NSDG-GG, which
this study because the hydrolysate contained a mixture of sugars would explain its low CDW and PHA content. Wild-type C. necator
in an organic buffer solution. Culture media used for bacterial H16 has been proven to grow on hydroxybenzoic acids, which is a
culture are typically sterilized by autoclaving, which is simple and lignin derivative, with PHA accumulation of 65 wt% and 63 wt% on
practical. However, many chemical reactions could occur during 3-hydroxybenzoic acid and 4-hydroxybenzoic acid, respectively.46
thermal processing owing to the complex composition of the However, it did not grow in the presence of other intermediates
hydrolysate. Thus, it is essential to determine the ability of the of hydroxybenzoic acid, such as vanillic acid or syringic acid, which
hydrolysate to withstand autoclaving without undergoing drastic could have been present in the hydrolysate. Therefore, it is possible
changes in its composition as a means of assessing its potential that the poor growth of C. necator NSDG-GG on the hydrolysate
for large-scale application. Sugars are known to be heat-sensitive, was due to low tolerance towards these phenolic compounds.
which was reported in a study as early as the 1930s.37 The enzymes These results highlight the importance of strain selection for the
used for hydrolysis of the pretreated RH were not removed at utilization of biomass-derived feedstocks.
the end of hydrolysis, and remained in the hydrolysate. At pH The marked improvements in CDW of B. cepacia USM when urea
of 7.0, the breakdown of the enzymes into amino acids during was used instead of NH4 Cl were in agreement with previous stud-
the sterilization process provide substrates for Maillard reaction ies, which reported increased growth and PHA accumulation when
to occur, resulting in the loss of sugars. Further reactions may complex nitrogen sources were used.47 Furthermore, the ability of
take place and give rise to formation of fermentation inhibitors B. cepacia USM to utilize urea is economically advantageous due
such as furfural and 5-hydroxymethylfurfural (5-HMF).38 Based on to its lower price.48 However, as each mole of urea contributes one
thermal degradation studies by Qi et al., degradation of xylose mole of carbon, the use of urea also increased the amount of car-
at high temperatures occurs more rapidly than glucose.39 Similar bon in the RH hydrolysate, leading to a lower C/N ratio and sub-
to the conversion of glucose to 5-HMF, xylose also undergoes a sequently a lower PHA content in the cells compared with when
dehydration reaction to form furfural. However, this occurs without NH4 Cl was used.
the need for the formation of an intermediate product, unlike Improvements in CDW and PHA accumulation when B. cepa-
glucose, which must first be converted to fructose before 5-HMF cia USM was cultivated in a fermentor could be attributed to
can be formed. The increase of total phenolics in the hydrolysate the provision of more controlled conditions. In addition, the
after autoclaving at pH 7.0 (Table 2) provided further evidence that hydrolysate was able to sustain growth of the cells up to 48 h,
inhibitory compounds were formed. despite the depletion of sugars by 24 h (Fig. 4(a)). As mentioned
The formation of other monosaccharides upon heating could earlier, this could be owing to the presence of additional nitroge-
be related to the degradation processes. Isomerization of glucose nous compounds, which could help to promote growth. These
to fructose occurs naturally by the action of glucose isomerase. results imply that the additional non-sugar components present in
Generally, this reaction involves a proton transfer that is mediated the RH hydrolysate provide an enriched environment to support
by a base, followed by an acid-catalyzed hydrogen shift.40 There- cell growth and at the same time induce sufficient accumulation
fore, a system that contains both a Lewis acid and Brønsted base of PHA.
enables this reaction to occur.41 One possibility is that the citrate Burkholderia strains have been known to utilize compounds that
salts present in the buffer solution had acted either as a Lewis acid are typically considered toxic, such as polychlorinated biphenyls
or Brønsted base, thus facilitating isomerization. The formation of and aromatic compounds.49,50 It has been reported that Burkholde-
mannose could be attributed to an epimerization reaction, as man- ria cepacia ATCC 17759 could tolerate and catabolize low con-
nose is an epimer of glucose. Previously, the epimerization of glu- centrations of certain inhibitory compounds present in biomass
cose to mannose has been reported using metal ion complexes hydrolysates.51 Based on the results in this study, it was postulated
or molybdate catalysts.42,43 However, in this study, no loss of sug- that B. cepacia USM could also possess similar metabolic pathways
ars was observed in the hydrolysate when it was heat-sterilized at that enable it to not only survive in the presence of inhibitory
pH 4.8, and no significant increase in total phenolics were detected compounds, but also utilize them for cellular activities. This study
(Table 2). The prevention of Maillard reaction by lowering the represents a significant effort in managing agricultural waste by
pH of the reaction system has also been reported in previous channeling RH into processes for obtaining PHA, a value-added
studies.44,45 product. As a multi-step process, conversion of a biomass such
The use of crude sugars obtained from hydrolysis or extraction as RH involves input of energy and chemicals at each step, which
of plant biomass may be beneficial for the purpose of microbial could increase the overall production costs at industrial level. To
cultivation. The unrefined and unpurified sugar solutions often make such a process economically feasible, improvements from
contain additional compounds, such as organic acids or nitroge- many aspects need to be considered. Nevertheless, with the con-
nous compounds, which could enhance growth of the bacteria tinuous emergence of new biotechnological tools, the develop-
and improve biosynthesis yields. Although the presence of these ment of cost-efficient biorefineries may be possible in the near
chemical components could potentially inhibit bacterial growth, future.
bioproduction of medium-chain-length polyhydroxyalkanoates. Int 49 Mitsui R, Kusano Y, Yurimoto H, Sakai Y, Kato N and Tanaka M,
J Biol Macromol 71:42–52 (2014). Formaldehyde fixation contributes to detoxification for growth of
46 Tomizawa S, Chuah JA, Matsumoto K, Doi Y and Numata K, Under- a nonmethylotroph, Burkholderia cepacia TM1, on vanillic acid. Appl
standing the limitations in the biosynthesis of polyhydroxyalka- Environ Microbiol 69:6128–6132 (2003).
noate (PHA) from lignin derivatives. ACS Sust Chem Eng 2:1106–1113 50 Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen
(2014). JF 3rd et al., Classification of the biphenyl- and polychlorinated
47 Khanna S and Srivastava AK, Recent advances in microbial polyhydrox- biphenyl-degrading strain LB400T and relatives as Burkholderia xen-
yalkanoates. Process Biochem 40:607–619 (2005). ovorans sp. nov. Int J Syst Evol Microbiol 54:1677–1681 (2004).
48 Ng KS, Wong YM, Tsuge T and Sudesh K, Biosynthesis and charac- 51 Pan W, Perrotta JA, Stipanovic AJ, Nomura CT and Nakas JP, Production
terization of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) and of polyhydroxyalkanoates by Burkholderia cepacia ATCC 17759 using
poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) copolymers a detoxified sugar maple hemicellulosic hydrolysate. J Ind Microbiol
using jatropha oil as the main carbon source. Process Biochem Biotechnol 39:459–469 (2012).
46:1572–1578 (2011).