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Histoapathological Imaging Using Deep Learning
Histoapathological Imaging Using Deep Learning
DOI: 10.32768/abc.202293364-376
INTRODUCTION
Breast cancer (BC) is the most prevalent cancer Despite our profound understanding of biological
among women and raises a fundamental challenge in mechanisms behind BC progression that led to
public health globally. Breast cancer continues to be development of various diagnostic and therapeutic
the most commonly diagnosed cancer and the second approaches, the widespread incidences of BC and its
leading cause of cancer deaths among U.S. women.1 subsequent heavy tolls necessitate early and accurate
The rate of BC incidence shows no declining prospect detection of BC. Besides, the emergence of
and in 2021, an estimated 281,550 new cases of personalized medicine drastically increases the load of
invasive BC were expected to be diagnosed in women work for pathologists and further complicates the
in the U.S. including 2650 new invasive cases, with an histopathologic detection of cancer. Therefore, it is
estimated death toll of 43600 women.2 important that diagnostic protocols equally concentrate
on the accuracy and efficiency of their performance.
*Address for correspondence: Recognition of lymph node metastases (LNMets)
Mossa Gardaneh, M.D.,
Genomedicx, Richmond Hill, Ontario, Canada is essential for pathological staging, prognosis, and
Tel: +1437-344-0309 adoption of appropriate treatment strategy in BC
Email: mossabenis65@gmail.com patients.3 Preoperative prediction of LNMets provides
Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376 364
Detection of Breast Cancer using Deep-Learning
365 Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376
Detection of Breast Cancer using Deep-Learning
Normalize data
Train EDCNN model with new Classification Figure 1. Training process of the experiments
Layers
We trained our Ensemble deep convolutional within the convolution layer and via employing dot
neural network utilizing a training whole-slide pipeline product when a kernel slides over input. This process
in order to specify whether a selected image includes is accompanied by bias, thereby applying a nonlinear
metastasis. The pipeline compromises model update activation function such as Rectified linear activation
and data preparation. In this classification system, low- is performed. The convolution layer output is
level input image features are extracted by the first transmitted to the pooling layer in order to decrease the
convolution layer, while semantic features are image dimensionality and maintain the essential image
extracted by subsequent layers. The output is produced information simultaneously. A series of pooling and
Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376 366
Detection of Breast Cancer using Deep-Learning
367 Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376
Detection of Breast Cancer using Deep-Learning
Using these splitting fashions, a series of procedure, computing the average precision score
experiments were conducted for four model networks. (APS) for performance measurement was done.
The elapsed time for each test was roughly ten to
twenty hours. Thereafter, the experimental results Results of Analyzing the full training and transfer
were calculated with regard to f1 score, recall, and learning
precision for each class, respectively. Then, to make Table 2 shows the parameters used for the models.
an easy comparison, both classes’ average results In this study, criteria 60% and 40% were used jointly
were calculated for each test. Additionally, to train and test the models with a learning rate of
classification performance was evaluated employing 0.0001 with epochs10. The outcomes achieved from
the Area Under the Curve (AUC) parameter and a the full training and transfer learning of Google net,
receiver operating characteristics (ROC) analysis in Mobile net and VGG16, Resnet50 on the Breast
order to validate the outcomes. Along with this cancer are presented.
Analyzing the models' performance of the full tuned VGG16 network effectively performed better
training and transfer learning than the ResNet50 network, whilst the performance of
Histopathological Images' dataset is summarized google-net and that of ResNet50 could be compared
in Table 3. The models' performance was analyzed with each other. Furthermore, in fully trained
within the context of breast histopathological images’ networks, mobile-net yielded poor results related to
categorization, divided into malignant (M) and benign the dataset of 'Breast Histopathological Images.
(B). Table 3 indicates that the pre-trained and fine-
Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376 368
Detection of Breast Cancer using Deep-Learning
Table 3. Results obtained from the transfer learning and Figure 4 shows Loss, Accuracy, Val loss, and Val
full-training accuracy of the four classification models when
Val Val applied to the dataset. Many of the models that were
Model Loss Accuracy
loss accuracy built on the dataset had a high-level performance.
0.032 0.003 However, the VGG16 method achieved the highest
1 VGG 16 0.9884 0.9075
6 0
recall and highest accuracy of any model applied.
Mobile- 0.325 0.286
2 0.8655 0.8810 Therefore, experimental results procured for the
net 6 4
ResNet5 0.162 0.163 dataset show that the VGG16 method outperformed
3 0.9397 0.9413 the other algorithms in terms of all metrics. We
0 1 3
Google- 0.058 0.003 believe that our cancer prediction framework could
4 0.9658 0.9135
net 4 4 assist oncologists to predict cancer incidence with
high accuracy.
1
Percentage
0,8
0,6
0,4
0,2
0
VGG 16 Mobile-net ResNet50 Google-net
Algorithms
Figure 4. Results obtained from the transfer learning and full-training
Moreover, we assessed the fully trained network networks' performance, as demonstrated in Figure 5.
performance, and google-net displayed an In this figure, the AUC and ROC curves of the fully
outstanding performance compared to ResNet50 trained and pre-trained networks for the
networks. We realized that google-net and VGG16 abovementioned four splits were compared. We
networks were clearly biased to a specific class, based found that pre-trained ResNet50 (AUC-98.04%) and
on the result obtained from Table 2. The solid VGG 16 (AUC 96.01%) perform better than the fully-
evidence for the mentioned claim could be the recall, trained mobile-net (AUC 97.01%) and google-net
a.k.a. sensitivity, value. Within fully trained google- (AUC 95.00%).
net and VGG16 networks, the recall amount was In Figure 5, we only provide test set accuracies to
concurrently extremely high for one specific class and prevent clutter. In each graph, we plotted the
super low for other classes. Conversely, being equally performance of transfer learning and that of full
sensitive to both of the classes, the ResNet50 network training against the number of iterations. First, we
could better work in comparison with google-net and found that transfer learning outperforms full training.
VGG16 networks. In the VGG16 model, the classification accuracy of
the test set for transfer learning and that of full
Analysis of AUC and ROC in the full training and training is comparable. Second, we also found that
transfer learning models fine-tuned models converge much earlier than their
Since the dataset size greatly affects the CNNs fully trained counterparts, showing that transfer
performance, four splitting fashions for testing- learning needs less training time to achieve maximum
training data (60%–40) were employed so as to performance. Although there is a great difference
evaluate model performance regarding testing- between natural/facial images and biomedical
training data size. With respect to this matter, AUC images, transfer learning gives better results than
and ROC analyses were applied to compare all learning from scratch.
369 Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376
Detection of Breast Cancer using Deep-Learning
a. VGG16 b. Mobile-net
c. ResNet50 d. Google-net
Figure 5. ROC analysis for breast cancer classification in (a) Fine-tuned pre-trained VGG16, (b) Fully trained mobile-net, (c)
Fine-tuned pre-trained ResNet50 (d) Fully-trained google-net
All four networks performed well; however, the transfer learning performed better than full training,
condition was somehow different for full training. In an outcome achieved from the comparisons. The
this study, VGG19 could perform well, but the aforesaid difference could be because of the feature
performance of google-net and VGG16 networks was space (source task) size and the network depth.
roughly analogous. The mobile-net deviation from the Secondly, we viewed that the models being fine-tuned
common trend was because of its higher sensitivity converged so much sooner than their fully trained
towards malignant and benign conditions during counterparts, showing that transfer learning needs less
60%–40% splitting separately. To sum up, it has been time for training to obtain maximum performance.
illustrated that the utilization of the transfer learning The categorization accuracies of fine-tuned VGG16,
method leads to a remarkable performance regarding mobile-net, ResNet50 and google-net were 0.9884%,
the CNNs with full training in the histopathological 0.8655%, 0.9397%, and 0.9658% after the first epoch.
imaging modality, even in the case of a limited-size Deeper architectures like VGG16 converged more
training dataset. In Table 3, we accurately compared quickly within fine-tuned settings, indicating the
our results with other research outcomes. ability to handle more intricate features. Besides, the
Figure 6 illustrates categorization accuracies utmost 0.9884% precision was obtained in the fine-
related to the VGG16 test set (Figure 6a), mobile-net tuned VGG16 model.
(Figure 6b), ResNet50 (Figure 6c), and google-net The experimental outcomes show that the learned
(Figure 6d). In each of these figures, we plotted the features from deep CNNs that were trained on generic
fine-tuning, full training, and transfer learning recognition works can be generalized to biomedical-
performance against the iterations’ number. Since the related tasks and can be employed in order to fine-
sizes of the patch were smaller within VGG16, the tune the new tasks possessing small datasets. Also, the
needed iterations’ number was higher in order to train comparison of accuracy, precision, and recall of
them for ten epochs. Firstly, we could observe that models are outlined in Table 4.
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Detection of Breast Cancer using Deep-Learning
a. VGG16
b. Mobile-net
c. ResNet50
d. Google-net
Figure 6. Comparison of transfer learning with fine-tuning and full training for networks (a) VGG16, (b) mobile-net, (c)
ResNet50, and (d) google-net
371 Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376
Detection of Breast Cancer using Deep-Learning
Table 4. Comparison of accuracy, precision and recall of Figure 7 shows the Precision, Recall, and
models Accuracy of the four classification models when
Validation Validation Validation applied to the dataset. The VGG16, and google net
Model
Precision Recall Accuracy method achieved the highest precision of any model
1 VGG 16 0.9242 0.9125 0.9116 and had the highest accuracy of any model applied.
Mobile-
Thus, experimental results procured show that the
2 0.7924 0.8171 0.8106 VGG16 and google net method outperformed the
net
other algorithms in terms of all metrics.
3 ResNet50 0.8856 0.8705 0.8754
Google-
4 0.9140 0.9001 0.9125
net
0,85 0,8171
0,8106
0,7924
0,8
0,75
0,7
VGG 16 Mobile-net ResNet50 Google-net
Figure 7. Comparison of accuracy, precision and recall of models implemented on validation data
Abdollahi et al. Arch Breast Cancer 2022; Vol. 9, No. 3: 364-376 372
Detection of Breast Cancer using Deep-Learning
DISCUSSION CONCLUSION
One of the major factors playing a role in women's The comparison of four various CNN models
mortality is BC. Nevertheless, an early diagnosis can possessing depths between three to thirteen
result in cancer-associated death rates reduction. convolutional layers was performed in this research.
Traditional classification methods for BC are based First of all, our empirical outcomes indicated that
upon handcrafted features approaches, and their initializing parameters of a network with transferred
performance depends on the selected features. They are features could enhance the categorization
also very sensitive to various sizes and intricate shapes. performance for any model. Nevertheless, deeper
Histopathological images of BC possess complex architectures that were trained on larger datasets
shapes; hence, the classical classification techniques converged rapidly. Furthermore, learning from
can be injected into DL algorithms after initial pre- scratch needs more training time than a pre-trained
processing. Employing a computer-assisted diagnosis network model. Considering this matter, fine-tuned
system, scholars observe that efficiency can be pre-trained VGG16 produced the best performance
enhanced, and costs will be diminished for the cancer- with 98.84% precision, 96.01% AUC, and 92.42 %
related diagnosis process. At present, an alternative APS for 90%–10% testing-training data splitting.
answer to diagnosis procedure that can surmount the
obstacles of classical categorization methods is DL ETHICAL CONSIDERATIONS
models. Deep learning has become an active area of Not applicable to this study.
research, and its application in histopathology is quite
new. ABBREVIATIONS
The principal cause of fatalities in BC patients is API, application programming interface; APS,
metastasis, referring to cancer cells spreading to average precision score; AUC, area under the curve;
different organs. Identifying cancer and determining its BC, breast cancer; CNNs, convolutional neural
potential in metastasis at an early stage is essential 29. networks; DL, deep learning; LNMets, lymph node
To our knowledge, this paper is the first one delineating metastases; PNG, portable network graphics; ROC,
the overall applicability of DL approach to the receiver operating characteristics.
diagnostic assessment of sentinel lymph nodes’ whole-
slide images. The potential suitability of this technique ACKNOWLEDGEMENTS
for enhancing the diagnostic process efficiency in None.
histopathology was well-demonstrated in this research.
This approach can result in adapted protocols in which FUNDING
pathologists conduct detailed analysis on various This research received no external funding.
samples since the simple samples are already taken
care of by a digital computer system. Table (5) CONFLICT OF INTEREST
compares the outcome of multiple relevant studies. The authors declare that they have no competing
interests.
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