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HSC Biology Notes Module 5
HSC Biology Notes Module 5
at 8TUVIN DYE
Cell Replication
Inquiry question: How important is it for genetic material to be replicated exactly?
Students:
● model the processes involved in cell replication, including but not limited to:
created by
– mitosis and meiosis
– DNA replication using the Watson and Crick DNA model, including nucleotide composition,
pairing and bonding
● assess the effect of the cell replication processes on the continuity of species
Asa Bayhadron
DNA and Polypeptide Synthesis
Inquiry question: Why is polypeptide synthesis important?
Students:
● construct appropriate representations to model and compare the forms in which DNA exists in
eukaryotes and prokaryotes
Adam Bagherdow
● model the process of polypeptide synthesis, including:
– transcription and translation
– assessing the importance of mRNA and tRNA in transcription and translation
– analysing the function and importance of polypeptide synthesis
at Enhane Education
– assessing how genes and environment affect phenotypic expression
● investigate the structure and function of proteins in living things
Genetic Variation
Inquiry question: How can the genetic similarities and differences within and between species be
compared?
Students:
● conduct practical investigations to predict variations in the genotype of offspring by modelling
meiosis, including the crossing over of homologous chromosomes, fertilisation and mutations
● model the formation of new combinations of genotypes produced during meiosis, including but not
limited to:
– interpreting examples of autosomal, sex-linkage, co-dominance, incomplete dominance and
multiple alleles
– constructing and interpreting information and data from pedigrees and Punnett squares
● collect, record and present data to represent frequencies of characteristics in a population, in order to
identify trends, patterns, relationships and limitations in data, for example:
– examining frequency data
– analysing single nucleotide polymorphism (SNP)
• Fetus is nurtured inside the body of • Energy and time inef cient: Reduces
the parent, which protects the fetus rate of sexual reproduction which
from predation and disease. This reduces genetic diversity of a
means genetically varied offspring population. This is disadvantageous
survive to continue to sexually because it reduces likelihood of
reproduce, which increases genetic being able to adapt to a selective
diversity. This is advantageous pressure, tarnishing the population’s
because it increases likelihood of a ability to thrive in it’s environment
population being able to survive a and reproduce, as a result, leading
selective pressure, enabling it to to the discontinuity of the species.
continue to adapt to changing • Higher chance of transmitting
environments and reproduce, as a diseases to parents through physical
result, contributing to the continuity and sexual contact.
of the species.
• Close proximity: Increase likelihood
of fertilisation.
Advantages Disadvantages
Underground stem that branches
Description: dispersing pollen in the air to
Internal
E.g. ginger
reach another plant’s ovary.
fertilisation Advantages:
• large amount of pollen can travel and reach
Underground stem with buds vast areas.
Disadvantage:
E.g. potatoes
• High chance of pollen not reaching and
fertilising plant
• good weather conditions are needed
Parent cell has protruding outgrowth (bud) • direction of wind must be ideal
which is a new plant
E.g. prickly pear
Sucker
Perennating organs
self pollination
Apomixis
GERUND REPRODUCTION
HIM 178101178
Budding is a small outgrowth, by mitosis, from the parent cell to form a clone
GYMNOSPERM
cell. This is an asexual type of reproduction.
ANGIOSPERMS
IÉÉÉ
independent buds.
e
or
EEII.EE IIEEE
ʰgains
f E
filament p
formhere
fgyy
3. The bud pinches inwards at the base of the
sporophyte
É 2. Daughter nucleus
yq
parent cell and detaches after reaching a certain moves into the bud/
size. outgrowth.
Note: buds may be smaller than the parent cell
I
but they are still genetically identical
I EE
• Energy and time ef cient because there is no
competition as only one parent is required.
• Produce genetically identical genetic copies:
favourable trait remains in the population,
enabling them to survive in their
• Offspring are all genetically identical which
reduces geneticOvary
diversity. This is
ovulesare
wherebecause
disadvantageous
formed
population is faced
in the case that the
with a selective pressure,
they will all react the same way to it, as a result,
tarnishing the population’s ability to thrive in
environment. their environment, leading to the discontinuity
of the species.
Spores: tiny, unicellular, haploid reproductive cells produced in sporangia (spore-producing
units). This is an asexual type of reproduction.
BUDDING
cellmembrane
film
0
1. Hyphae (thread/ lament) form sporangia on tip of hyphae thread.
2. Spores burst out of sporangia. Spores initially are white and not mature.
0
3. Spores turn black as they ripen and mature.
4. Spores germinate under favourable environmental conditions as they absorb water
and nutrients to undergo mitosis and produce hyphae.
5. Hyphae branch out and for a mycelium (main body/network of hyphae).
To
that myceli.am
spores n flaff're
1. Bacteria cell grows to full
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6. Two genetically identical spores adult size, under
favourable environmental
daughter cells are formed. They
conditions.
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grow to adult size and undergo
binary ssion again. spores sporangia
9 7 containsspores
2. Cell elongates and
8 cytoplasm volume increases.
lFF stolon
FE
hyphae
tips
5. Proteins accumulate at the
centre of the cell and the
cytoplasm begins pinching the
cell inwards. It elongates and
the cell begins synthesising a 4. Each copy of the DNA 3. Circular DNA, plasmids
cell wall near the cleavage. moves to opposite ends and ribosomes replicate.
of the cell membrane in
preparation of splitting.
Advantages Disadvantages
• Produce genetically identical genetic copies: • Offspring are all genetically identical which
favourable trait remains in the population, reduces genetic diversity. This is
enabling them to survive in their environment. disadvantageous because in the case that the
• Energy and time ef cient because there is no population is faced with a selective pressure,
competition as only one parent is required. they will all react the same way to it, as a result,
tarnishing the population’s ability to thrive in
their environment, leading to the discontinuity
of the species.
ribosome
cytoplasm
me
chromosomal DNA
anergy
Binary Fission: The splitting of a protist cell into 2 genetically identical daughter
cells.
Fri
• Protist cell grows to full
fish
• The nuclei splits and
adult size, under Protist cell completely splits,
creates 2 genetically
favourable environmental forming 2 genetically
identical daughter nuclei.
conditions. identical daughter cells.
• Cell pinches in and forms
• DNA in nucleus duplicates a cleavage.
via DNA replication.
88
clone cell. This is an asexual type of reproduction.
BINARY FISSION
1. Small outgrowth/bud
develops on parent
5. Chain of buds cell, under favourable
detach from environmental
nucleus
parent cell and conditions.
2. The nucleus replicates its
DNA via DNA replication
continues to and split.
grow.
cell A
membrane
Examples
plasmodiumfalciparum Malaria
Amoeba
paramecium
Giardialamblia
BUDDING
Fertilisation: Refers to the fusion between a haploid egg cell (female gamete) and a haploid
sperm cell (male gamete), in order to produce a diploid zygote.
Algaecellsy
small bud
UEf
outgrowth
f
nucleus
µ
U
ftp.T EY
U
Y U
Examples
Acrosome of sperm then release
Sperm t in glycoprotein like a
Algae hydrolytic enzymes to break down
and penetrate
lock and key. Once
Toxoplasmosis
Zona Pellucida (Second layer).
glycoprotein is destroyed, the
Zona Pellucida (second layer)
hardens to protect zygote.
I
The sperm’s nucleus
enters the cytoplasm of i.if iii.i if together,
Both nuclei fuse
E.si
the ovum and eventually forming a diploid zygote
reaches the ovum’s cell (2n).
nucleus.
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Afertilised egg embedding itself to the endometrium uterine wall
Fertilisation
Morula Cleavage
Blastocyst
Embryo FERTILISATION
hÉÉ
If
excretory system
as heart
mass g
Pituitary gland
AKAmastergland
g
Produces prolactin whichpromotes
the secretion of milkfrommammary
glands Hypothalamus
ReleasesGnRH
Gonadotropin
ReleasingHormone
whichactsonthe
É
MN secreteFSH LH
if.fi
w Éf
III
produces oxytosin
Hanafin
whichcontributesto
Promotesthedevelopmentofthe
wall as positivefeedback follicle
as a response tothe LH LutenisingHormone
fetus pushing kicking causes thefollicleto release
on the wall the ovum egg Day14during
more contractions Trophoblastcells ovulation
moreoxytosin hCG Humanchorionic Destrogen
Released byovaries and
gonadotropin promotes the development of
Maintains thecorpus the endometrium
luteumforthefirst8weeks
Destrogen is releasedby
the
Kkk fertightangifests first PYeekYteum in
NEGATIVE POSITIVEFEEDBACK Progesterone
vascularisestheendometrium
Body
aÉf'The pposite.oxytposi.sn sEeleasedandmakesitmucus like
ofwhatishappening toincrease uterine suppresses uterine activity
toregulatebodily contractions whena during pregnancy
functions fetus pushes on the
Eg High estrogen wall contractions Progesterone isreleased
by
Progesteffffless
Push inthedirection the corpusluteum in the
offetuskicking first 6 weeks
BRAIN
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GnRH
anterior posterior Pituitary
De nition: Refers to the arti cial transfer of
male sperm into a female vagina to produce an
gland
offspring with favourable traits from each
vascularise the endometrium
parent.
withbloodcarryingnutrients
Process:
AND inhibitsGnRHwhich
stopsFSHand LH
51 784 1799
1. Sperm is extracted from male with
favourable characteristics.
70
folliclewithout
to secondary
001
2. Sperm is mixed into a solution containing
chemicals (glycerol and buffer solution), an
then frozen using nitrogen. This is effective progesterone
for long term storage.
3. Sperm is thawed then injected into female estrogen
y
with favourable characteristics, using
Inhibin
t.ae
specialised equipment.
4. Results in offspring with favourable
characteristics from both mother and father.
Fertilisation
characteristics. This is is disadvantageous because a limited gene
t.LI fhtiihtT
advantageous because it increases pool reduces the likelihood of the population
the likelihood of the population being able to adapt to a selective pressure.
implantation
being able to adapt to a selective This tarnishes the population’sdegenerate
ability to thrive
pressure. of
Theoutermass theblastocyst in their
and stop
environment and reproduce, as a
trophoblast will secrete HCG
• Sperm is easier to transport than the progesterone estrogen
result, leading to the discontinuity of the
whole animal, making it a more
thefirst 8
in accessible and weeks of pregnancy
convenient method.
and inhibin
species.
• Specialised equipment is costly, time
to the
•maintain
corpus luteum
Can be used in conservation to inhibits GnRHwhich stopstoFSH
consuming and has the potential causeand LH
the of
increase the numbers of injury to the female if carried out incorrectly.
continues production
endangered species. thedrop in progesterone
• Does not always and estrogen
favour the offspring, for
•progesterone estrogen and
will
Economic gain (Friesian - Jersey example, Friesian - Jersey cattle develop
cause wall to shed
uterine
inhibin no GnRH
cattle): Milk companies suchno as A2 abnormally large udders due to high yield of
LH
FSH due tono of
large quantities of high- follicle
maturation new
milk and Dairy Farmers will bene t
and be released
creamy milk which leads to pain, diseases and
as a
period
inability to walk (Ethical consideration).
i Maintains uterine
quality milk.
lining which as a resultpromoting cycle a new
prevents a miscarriage
by stimulating the maturation
After 8 weeks placenta begins of a new follicle
releasing progesterone estrogen
HCGdrops
AIFEIBIIG.IT DDIINSEIYIINATION
De nition: Refers to the process of manually transferring
pollen from the anther of one plant to the stigma of another.
f
Process
offETA
characteristics.
3. Manually transfer pollen grain to female stigma of
another plant with favourable characteristics.
4. Remove anthers form receiving plant to prevent self-
pollination, and keep in a greenhouse to prevent a 1
pollination from other plants.
5. Seed will germinate and an offspring with favourable
RIETI
traits of both parents is produced.
ffyfg.fi ff dffor
1. Restores the nucleus by passing on genetic information to new cells
2. Growth and Development from zygote to adult
2. Maintenance and Repair of damaged cells
3. Asexual reproduction in plants (vegetative propagation) a
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4. Genetic stability by ensuring cells are genetically identical m e
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Drought t suitable
Highyield
to augmiangimate
POSITIVEIMPLICATIONS NEGATIVE IMPLICATIONS
PURPOSE
centrioles
mineralogyInethane 8888
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CYTOKENISIS
Gf alongtheequatormiddle
Mformetaphase Middle
ANAPHASE
TELOPHASE
Spindlefibrescontract pullingapartthe46
chromosomes uncoil form chromosomes
forming 92singlestranded
chromatin chromosomes
spindle fibresdisappear spindlefibresthencontinue to pullthe
Nuclear membranereforms single stranded chromosomes to oppositeends
Cellpinches in themiddleto 46singlestranded chromosomesoneachside
separatecytoplasmformingcleavage A'forAnaphase Away
INTERPHASE
Cellcontents duplicate
uÉarmembrane
DNAduplicatesthrough cellmembrane
DNAreplication DNA
Proofreadingandediting CR
ofDNA to preventmutations
EARLY PROPHASE
Physicalexchangebetween
DNAcondenses intochromosomes
Homologouschromosomes Pa Agf yd genesfromthesameregion
synapsis
Bypffdy h ffff h Fh
LATE PROPHASE
Randomhomologouschromosomes chiasma
will cross over and physically
exchange genetic material yfzgfrtf
spindlefibresappear
nuclear membrane disappears ftp.yyffyf
METAPHASE I
Homologouschromosomes
Independent Assortment
ftp.gofgff0fs.cdgfxg
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ANAPHASE I
ff.LIfffnfffffgg
of
centromeres middle Independentissortment
a a an
chromosome andpull chromosomes
align differently
ends differentcombinations
Random segregation 181 de.in diagram there are 4
differentiominationW
22 4 combinations
In ahuman gamete thereare
8388602combinations
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i.fi
TELOPHASE I
ff
Cytoplasm pinches to separatethe cells
ftp.adf
Spindlefibres disappear b
b
Nucleusreforms
CYTOKENISIS
Cell elongatesand splitsinto 2 genetically
diverse cells ff fix
b b
Chromatids uncoil toformchromatin
PROPHASE
II
4 geneticallyvariedhaploid
helical structure
sex cells
exposing nitrogenous bases
D fit off O IT
KEY
Guanine
p Phosphate DNA Helicase
cytosine
s Pentose Adenine DNApolymerase
sugar thymine
5 3
g 3
0
6
o f
KEEFE
6
KEECH 4
6
DNA primase generates DNA and RNA Forms 2 semi conservative identical
primers which signals DNA polymerase to DNA strands. Here, the pink strands
d
attach free floating complementary
nucleotides in 5’ to 3’ direction of the leading
and lagging strand. For the lagging strand,
b are the newly synthesised strand
whereas the blue strands are the old
strands.
the nucleotides are attached in a series of
okazaki fragments in 5’ to 3’ direction, which
are then joined together by 0 DNA ligase. 5
5 5 3 5 3
5 3 5 3 5
BE
up of differing combinations of alleles, which fertilise to eventually
develop genetically varied offspring. This is advantageous because
it increases genetic diversity/decrease homogeneity of a population,
to be passed on to offspring
due to variation in gametes Is
which increases the likelihood ofP the population adapting to a
p selective pressure. As a result, this enables the p
potential population p
3
to thrive in its environment and continue to reproduce, ultimately
contributing to the continuity of the species.
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genetically varied offspring. This increases genetic diversity/increases homogeneity of the
genetic diversity/decrease homogeneity of a population because no new alleles are being
I
population because it introduces new
I
introduced. This is disadvantageous because in
3 combinations of alleles. This is advantageous
3 3
the case that the population is faced with a
5
because it increases the likelihood of the
I
selective pressure, they will all react the same
population adapting to a selective pressure, way to it, as a result, tarnishing the population’s
allowing it to thrive in its environment and ability to thrive in their environment and
continue to sexually reproduce, ultimately reproduce, leading to the discontinuity of the
contributing to the continuity of the species. species.
DNA replication in interphase ensures the DNA replication may potentially introduce
accurate duplication of genetic information, errors in the DNA code, know as mutations.
leading to diploid daughter cells through These mutations may result in non-
Mitosis. Without this DNA replication, mitosis functional proteins, leading to incorrect
would create non-functioning haploid phenotypic expression and potentially
daughter cells. The correct DNA amount is unfavourable characteristics. Such
advantageous for coding functional proteins, unfavourable trains can reduce the
ensuring accurate phenotypic expression and population’s ability to survive and
favourable characteristics. This adaptation reproduce under a selective pressure,
supports the organism’s ability to thrive and ultimately leading to the discontinuity of
reproduce in its environment, ultimately, the species.
enhancing the continuity of the species.
ASSESS THE EBBEGTOBGEDIBEPE.IEDT I ON
GONTII.NUITY0B8HEGIIE8
Advantages Disadvantages
Advantages Disadvantages
AND IIB EUKARYOTES AND
PROKARYOTES
EUKARYOTES PROKARYOTES
1. Initiation: RNA polymerase attaches to the promotor region which
unzips the DNA strand to expose nitrogenous bases
cell membrane
2. Elongation: Complementary RNA nucelotides from RNA nucleotide
Transcription
pool is added along the sense strand to non-sense strand in order to create
pre-mRNA. The strand is complementary to the non-coding strand, except
thymine is replaced by Uracil
iiiiiii
from degrading once it enters the cytoplasm (like a boat entering raging
waters). The mRNA is now mature! It now moves out of the nucleus through
i
nuclear
nuclear pores and into the cytoplasm to ribosomes. membrane
iiia.in
i e natin
nucleotides
phosphate
fiihn
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1. Initiation: The rRNA makes its way to the mature mRNA and
ribosomal units assemble around the mRNA like a sandwich. They
Deoxy
start at the 5’ cap and move down until it reaches the start codon.
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2. Elongation: As the rRNA reads the start codon, a tRNA molecule
ig
carrying anticodons to the start codon (complementary/opposite to the
yi.yy
qq.iq
igyy
rRNA codons) attaches to the rRNA molecule. The tRNA also carries a
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corresponding amino acid. The anti-codon binds to the start codon via
yy
g
complementary base pairing. This binding action causes the amino acid
ig iqgq
ii
from theii tRNA
i yto be released. The tRNA is the ejected from the rRNA
molecule. The rRNA moves to the next codonq and this process repeats.
iz
The amino acid released binds to the amino from the previous tRNA
yy
molecule, forming a polypeptide chain bonded by peptide bonding.
bases
Pfiffner
mRNA
In transcription, mRNA acts as a In translation. tRNA
ÉI
messenger molecule that makes a decodes the mRNA
complimentary copy of the genetic molecules by carrying a
information and carries it from theÉI particular anticodon and
É
thus,3aRNA
IÉ
nucleus to the ribosomes in the speci Processing
c amino acid
to the rRNA. This also
removed
that the correct,from
1 Introns
cytoplasm.
ensures
premature mRNA
In translation, the individual codons functioning protein
spliceosome
is by
specify the particular anti-codon and produced. enzyme
also, the amino acids that form the ii 5cap andPolyATail is
polypeptide chain. All this minimises added to stabilise
2 risk
the Elongation
5 ensures
of a mutation and thus 3 prematuremRNAand
that the correct, functioning protein is
complementary prevent it from
produced.
RNA nucleotides degredation
fromRNA nucleotide whichturns it
pool addedalong sense into maturemRNA
strand to create pre mRNA
strand
note.nameUracil met
with a
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TRANSCRIPTION
TRANSLATION
INESSENGERRNA TRANSFERRNAN
Nitrogenousbases amino acid
pongata
say u.fi ti
Think about this entire process like a
110000
to
ffeffffsif.fi
cooking book. You are at the library
and you want to make Butter Chicken.
Instead of taking the entire book with
you home, you photocopy the Butter
Chicken recipe and take it home and
n
make a delicious meal.
0
0 00 0 0 SILENE
97 EISELEY
Folded and held
Basicaminoacidsequence simple by hydrogen
Eg cow insulin BY hape
TERTIARY
Bond
QUATERNARY
ifti
t.IE
iI CPYEHsiF E f Iiii E EEIIII
ÉIIIII IIEI.IE
a
Eg Keratin multiplepolypeptide
chains
Eg haemoglobin collagen
TYPESOBPBOTEII.MS
TYPES FUNCTION EXAMPLE
support movement
structural maintain theshape of cells Collagen Keratin
proteins tissues organs and systems Hairand nails
form a cytoskeleton
speed up biochemical Amalayse breaksdown
Enzyme reactions catalyse carbs and starch in
proteins especially in respiration saliva Digestion
and digestion
work in conjunction Oxytosin FSH follicle
communication with the endocrine
proteins hormones and nervous stimulating hormone
hormones system
II E I
to
iii
GBDEGEDDANAEH'IIA
• Types: Autosomal and Dominant
• e.g. Sickle Cell Anaemia ◦ X-linked (Dominant and
• Requirements: Recessive)
◦ Y-linked (Dominant)
• E.g. Red-Green colour blindness
Formal
RedBloodcell 51k
Blood cellI^A,
• De nition: More than 2 alleles per gene
• Example: Blood has 3 possible alleles
I^B and i. These 3 alleles form 6 different
mail.fi
genotypes and 4 different phenotypes
in
threonine proline
iEiikat
threonine Proline
valine
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IDENTICALTWINSEXPERIMINTI
Of 0
schizophrenia
A
twin
schizophreniaXr
PUNNET SQUARES
KEY A
A
Acharacteristic
Dominant
a Recessive A AA Aa
characteristic
a Aaaa
• Trait appears in both • Trait appears in both
sexes relatively equally. sexes relatively equally
Genotype
• Does NOT skip a • Trait tends to skip a
generation(s)
generation
AA dominant
• Affected parents MUST
Homozygous 25
• Unaffected parents tend
to produce affected
produce affected
Aa Heterozygous dominant
offspring
50
offspring
aa Homozygous recessive 25
Genotypic Ratio AA Aa ad
1 2 1
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the species
• Allele Frequency Formula:
Dominant Recessive
Characteristics
• Usefulness of SNPs:
Characteristics
◦ SNP’s serve as genetic markers. Certain SNP’s are present in high
frequency in individuals with speci c diseases, and as such, by identifying
whether or not a speci c individual has these SNP’s, their predisposition of
a disease can be determined.
◦ Mutations allow variation: enzyme functioning changes, appearance
changes, disease susceptibility
• Limitations of SNPs:
◦ Most SNOs occur in introns which are removed, so cannot be recorded by
scientists
FREQUENCY DATA
t.IM 9
2. Amplify DNA using PCR Tandem Repeats (STR), which are
3. place ampli ed DNA into seperate sections of introns that are repeated
m each test tube
test tubes, nagmany times, e.g. TATATATA.
in population
containing Fluorescent Labelled 3. Amplify STR using PCR.
Chain Terminating Nucleotides 4. STR is placed in agarose gel where
(FLCTN), DNA polymerase, electric current is applied.
primer, spare nucleotides and the 5. STR are negatively charged so will
ampli ed DNA strands move to opposite end of the gel
SINGLE POLYMORPHISM SNP
4. DNA is synthesised into different
lengths containing FLCTN
(positive charge).
6. Shorter STR fragments with less
5. DNA is placed in agarose gel repeats move through gel quickly and
where electrical current is applied emerge before larger STR fragments.
6. DNA is negatively charged so it 7. This then creates a DNA pro le which
will move to the opposite end can be used for comparison.
(positive charge)
7. Smaller strands move through gel
quicker due to smaller molecular Short tandem repeats (STRs): Sections of
weight non-coding regions (introns) in our DNA
8. FLCTN is analysed by computer/ that are repeated many times over e.g.
sequencer which enable scientists TATATATATA These have a high variation
to determine order of nucleotides among different individuals.
adf.int
DFTD, or Devil Facial Tumour Disease, is a contagious cancer affecting
Tasmanian devils. It originates from a mutation causing tumours to develop
around the mouth and head of the affected devils. This cancer disrupts their
feeding, leading to death within 3-5 months. Tasmanian devils often bite each
other while feeding, facilitating the spread of DFTD through direct contact.
When an infected devil bites a non-infected one during feeding, the cancerous
mutation is transmitted. This continuous transmission within the population
results in a decline, as infected devils are unable to feed properly. Consequently,
the Tasmanian devil population dwindles, reducing genetic diversity due to
fewer alleles. This is disadvantageous because it reduces likelihood of being
able to adapt to a selective pressure, as a result, tarnishing their ability to thrive
in their environment and continue to reproduce, leading to the eventual
discontinuity of the species.
iief
genetic features which indicated that
male Neanderthals had offspring with
female homo-sapiens.
ah
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