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ne polymorphisms of TNF-α−308 (GA), IL-10−1082 (GA), IL-6−174 (GC) and IL-1Ra
ne polymorphisms of TNF-α−308 (GA), IL-10−1082 (GA), IL-6−174 (GC) and IL-1Ra
AHMAD SETTIN1,2,†, AZZA ISMAIL4, MEGAHED ABO EL-MAGD3, RIZK EL-BAZ1, &
AMIRA KAZAMEL4
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1
Genetics Unit, Children Hospital, Mansoura University, Mansoura, Egypt, 2College of Medicine, Qassim University,
Buraydah, Saudi Arabia, 3Diabetes and Endocrinology Unit, Internal Medicine Specialist Hospital, Mansoura University,
Mansoura, Egypt, and 4Zoology Department, Faculty of Science, Mansoura University, Mansoura, Egypt
Abstract
Background. Type 1 diabetes (T1D) is a genetically conditioned autoimmune disease in which cytokines play an important role.
Objectives. To check for the association of polymorphisms of cytokine genes with type 1 diabetes.
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Subjects. This work included 50 cases with T1D and 98 healthy individuals from the Nile Delta region of Egypt. Cases included
20 males and 30 females with a median age of 25 and range of 15–50 years.
Methods. DNA was amplified using PCR with sequence-specific primers for detection of polymorphisms related to tumor
necrosis factor (TNF)-a2308 (G/A), interleukin (IL)-1021082 (G/A), IL-62174 (G/C), and IL-1Ra (VNTR).
Results. Cases with T1D showed significant higher frequency of genotypes of TNF-a2308 AA ( p , 0.001, odds ratio
(OR) ¼ 7.91), IL-6-17CC ( p , 0.05, OR ¼ 3.36) and IL-1Ra A1A1 ( p , 0.05, OR ¼ 3.68) with significant lower frequencies
of TNF-a2308 GA, and IL-1Ra A1A2 genotypes ( p , 0.001 and ,0.05, respectively). They also showed significant higher
frequency of TNF-a2308 allele A ( p , 0.05, OR ¼ 2.0), IL-1Ra allele A1 ( p , 0.05, OR ¼ 2.98) with a significant lower
frequency of TNF-a2308 G allele and IL-1Ra A2 allele ( p , 0.05). No significant difference was detected among cases in relation
to IL-1021082 (G/A) genotypes or alleles nor in relation to age, sex, consanguinity or family history of the disease.
Conclusions. Polymorphisms related to TNF-a and IL-1Ra genes may be considered genetic markers for T1D among Egyptians
with a potential impact on family counseling and management.
Correspondence: A. Settin, Genetics Unit, Children Hospital, Mansoura University, Mansoura, Egypt. Fax: +20 50 223 4092.
E-mail: settin@mans.edu.eg; settin60@gmail.com
Cytokine gene polymorphism in T1D 51
allele one (A1, four repeats), allele two (A2, two Subjects and methods
repeats) in addition to other three alleles [9].
This study included 50 cases diagnosed as T1D with
Tumor necrosis factor (TNF)-a play a central role positive antibodies against insulin and glutamic acid
in the autoimmune destruction of pancreatic beta- decarboxylase with very low C-peptide. They were
cells, whereas IL-6 inhibits TNF-a secretion, and recruited from the Department of Endocrinology and
may have some protective effects [10]. In human, Diabetes, Internal Medicine Specialist Hospital,
the TNF-a gene is located within the highly Mansoura University, which is the main referral
polymorphic major histocompatibility complex hospital in the Nile Delta region of Egypt. They
region on chromosome 6p21.3 [11]. Many studies comprised 20 (40%) males and 30 (60%) females with
have shown that SNP at position 2 308 G/A was a median age of 25 years and range of 15 – 50 years.
associated with various inflammatory conditions Of these cases, 21 (42%) had an age of onset of the
[12]. Also, a polymorphism in the 50 flanking region disease # 18 years, 33 (66%) were presented with
of the IL-6 gene on chromosome 7 at position 2 174 ketoacidosis, 13 (26%) had a positive parental
has been reported to exert an effect on its secretion consanguinity and 19 (38%) had a positive family
and function [13]. history of T1D. Case genotypes were compared to 98
IL-10 is an anti-inflammatory and immunosup- healthy unrelated blood donor volunteers from the
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pressive substance produced within the body and same locality. They included 52 males and 46 females
plays a role in the regulation of immune responses with a median age of 45 years. Informed consent was
[14,15]. The gene for IL-10 in chromosome region taken from all subjects and an approval was also
1q31 – q32 has three biallelic single nucleotide poly- obtained from University Scientific and Ethical
morphisms (SNPs) within the promoter region, at Committees to carry out the research.
positions 2 1082, 2 819, and 2 592 from the tran- For all subjects, three SNPs were analyzed includ-
scription initiation site [16]. The 2 1082 (G/A) ing gene promoter sites TNF-a2308 (G/A), IL-
polymorphism was shown to affect the in vitro IL-10 1021082 (G/A) and IL-62174 (G/C) in addition to
production in peripheral blood cells from healthy IL-1Ra gene VNTR in intron 2 as previously
For personal use only.
Figure 1. PCR amplification for studied cytokine gene polymorphisms including: Strip (I) TNF-a2308 (band size: 836 bp) showing: lane M:
DNA size marker, lanes 1, 2, 4, 6 with þ ve bands for G and A alleles, i.e. GA genotypes, lane 5 with only þ ve band for A allele, i.e. AA
genotype, lane 7 with only þ ve band for G allele, i.e. GG genotype and lane 3 with 2ve control; Strip (II) IL-1021082 (band size 179 bp)
showing: lanes 1, 3, 4 with þ ve bands for G and A alleles, i.e. GA genotypes, lane 6 with only þ ve band for A allele, i.e. AA genotype, lanes 5,
7 with only þ ve band for G allele, i.e. GG genotypes and lane 2 with 2ve control. Strip (III) IL-62174 (band size 234 bp) showing lanes 1, 6, 7
with þ ve bands for G and C alleles, i.e. GC genotypes, lanes 2 –4 with only þ ve band for G allele, i.e. GG genotypes and lane 5 with only þ ve
band for C allele, i.e. CC genotype.
52 A. Settin et al.
Results
Compared to controls, cases with T1D showed
significant higher frequency of TNF-a2308 AA
genotype ( p , 0.001, OR ¼ 7.91, 95% CI ¼ 3.4 –
Figure 2. PCR amplification for IL-1Ra VNTR in intron 2
showing two alleles: band size 410 bp for A1 allele and band size 18.3), IL-6-17CC genotype ( p , 0.05, OR ¼ 3.36,
240 bp for A2 allele. Lane M shows DNA size marker. Lanes 1, 4, 7 95% CI ¼ 1.12 – 10.1) and IL-1Ra A1A1 genotype
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show þ ve bands of A1 and A2 alleles, i.e. A1A2 genotype, lanes 2, ( p , 0.05, OR ¼ 3.68, 95% CI ¼ 1.56 – 8.68);
5, 6 show only one band of A1 allele giving A1A1 genotype while (Table I).
lane 3 is a negative control sample with no DNA showing failure of
Regarding allele frequencies, total cases showed
amplification.
significant higher frequency of TNF-a2308 allele A
( p , 0.05, OR ¼ 2.0, 95% CI ¼ 1.2 –3.3), IL-1Ra
purchased from QiaGene (Valencia, CA, USA). The
allele A1 ( p , 0.05, OR ¼ 2.98, 95% CI ¼ 1.33 –
assay was performed in Techne-Genius thermal-cycler
6.66) with a significant lower frequency of TNF-a2308
(Cambridge, England). We were careful to prepare
G allele and IL-1Ra allele A2 ( p , 0.05; Table II).
PCR master mixes applied for multiple cases and for
In the meantime, these cases showed significant
different polymorphisms together with positive and
lower frequency of TNF-a2308 GA and IL-1Ra A1A2
negative controls at the same sitting to obtain accurate
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Table I. IL-62147, IL-1021082, TNF-a2308 and IL-1Ra VNTR genotype frequencies among cases with type 1 diabetes compared to controls
with their statistical significance.
IL-6-147
GG 3 (6.0) 5 (5.1) 1.19 (0.27–5.2)
GC 38 (76.0) 87 (88.8) 0.40 (0.16–0.98)
CC 9 (18.0)* 6 (6.1) 3.36 (1.12–10.1)
IL-1021082
GG 5 (10.0) 5 (5.1) 2.17 (0.67–7.51)
GA 40 (80.0) 85 (86.7) 0.61 (0.24–1.51)
AA 5 (10.0) 8 (8.2) 1.25 (0.38–4.04)
TNF-a2308
GG 6 (12.0) 6 (6.1) 2.1 (0.6–6.7)
GA 19 (38.0)** 81 (82.7) 0.1 (0.1–0.3)
AA 25 (50.0)** 11 (11.2) 7.9 (3.4–18.3)
IL-1Ra VNTR
A1A1 42 (84.0)* 57 (58.2) 3.68 (1.56–8.68)
A1A2 8 (16.0)* 41 (41.80) 0.27 (0.11–0.63)
Table II. IL-62147, IL-1021082, TNF-a2308 and IL-1Ra VNTR reported no association of IL-Ra polymorphisms with
allele frequencies among cases with type 1 diabetes compared to T1D [27] contrasting what was reported before in the
controls with their statistical significance. same population of increased frequency of the A1A1
Cases, n ¼ 100 Controls, n ¼ 196 OR genotype with T1D [28–30].
Alleles (%) (%) (95% CI) Regarding IL-6, our results were in agreement to
what was previously reported in Hungary that T1D
IL-6-147
G 44 (44.0) 97 (49.5) 0.80 (0.59 –1.30)
was significantly associated with IL-62174 CC geno-
C 56 (56.0) 99 (50.5) 1.24 (0.87 –2.02) type [31,32]. Also, English researcher found that the
IL-1021082 IL-62174 CC genotype was significantly different
G 50 (50.0) 95 (48.5) 1.16 (0.65 –1.72) considering age and sex of studied cases [10].
A 50 (50.0) 101 (51.5) 0.94 (0.58 –1.52) However, in another study among Caucasoid patients
TNF-a2308
G 31 (31.0)* 93 (47.4) 0.5 (0.3–0.8)
with T1D, homozygous IL-6 GG genotype was found
A 69 (69.0)* 103 (52.6) 2.0 (1.2–3.3) increased in the patients compared to the normal
IL-1Ra VNTR controls [33].
A1 92 (92.0)* 154 (79.4) 2.98 (1.33 –6.66) Regarding IL-10 gene polymorphism at position
A2 8 (8.0)* 42 (20.6) 0.33 (0.15 –0.74) 2 1082, we have found no significant difference of
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cytokines resulting in a specific clinical behavior is well susceptibility to T1D. In a previous study by the
reported in T1D. Cytokines largely influence the same group in Japan, they reported that only ages
immunologic function, initiation and progression of older than 18 years showed significant higher
the disease [22]. frequency of AA genotype [36]. In addition, a minor
The most prominent feature from the current study is role was assumed to IL-10 genotypes in the
the significant higher frequencies of TNF-a2308 AA autoimmune diabetes risk in Spanish T1D patients
and IL-1Ra A1A1 genotypes with consequent higher [37]. However, Polish authors demonstrated that
frequencies of TNF-a2308 A and IL-1Ra A1 alleles IL-1021082 polymorphism is related to T1D especially
among Egyptian cases of T1D. IL-62174 CC genotype AA genotypes [24]. Controversies may be explained
frequency was also high among cases but with no by the assumption that these genotypes are population
significant increase in the frequency of C allele that specific and co-segregate with the disease genes in
seems to be due to its association with the above- different forms among different ethnic groups.
mentioned genotypes. Homozygosity in these cases— Based on this study, we can conclude that cytokine
due to either parental consanguinity or random gene polymorphisms related to TNF-a and IL-1Ra
relations—is obviously augmenting the effects of these genes may be considered as genetic markers for T1D
risk alleles and is a feature of the disease. On the other among Egyptian cases with potential benefit regarding
hand, significant lower frequency was observed with family counseling and disease management.
heterozygous genotypes of TNF-a2308 GA and IL-1Ra
A1A2 that may be considered a low risk or protective Declaration of interest: Authors declare absolute
genotypes. The same was previously reported by freedom of any conflict of interest related to this work.
Kumar et al. [23] that TNF-a2308 AA genotype was
significantly increased in North Indian patients with
T1D compared with the controls. Also, in a study Note
among Polish subjects, authors noted that TNF-a2308 †
Visiting Professor, Qassim University, BO 6040, Buraydah 51432,
GA genotype was found only in cases but not in controls Saudi Arabia. Tel. 966 6 3851317.
[24]. On the other hand, Deng et al. [25] reported that
no primary association was found between the 2308
polymorphism in TNF-a promoter region and T1D References
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