NEJMoa 2307952

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The n e w e ng l a n d j o u r na l of m e dic i n e

Original Article

Intrathecal Gene Therapy


for Giant Axonal Neuropathy
D.X. Bharucha‑Goebel, J.J. Todd, D. Saade, G. Norato, M. Jain, T. Lehky,
R.M. Bailey, J.A. Chichester, R. Calcedo, D. Armao, A.R. Foley, P. Mohassel,
E. Tesfaye, B.P. Carlin, B. Seremula, M. Waite, W.M. Zein, L.A. Huryn, T.O. Crawford,
C.J. Sumner, A. Hoke, J.D. Heiss, L. Charnas, J.E. Hooper, T.W. Bouldin, E.M. Kang,
D. Rybin, S.J. Gray, and C.G. Bönnemann, for the GAN Trial Team*​​

A BS T R AC T

BACKGROUND
The authors’ full names, academic de- Giant axonal neuropathy is a rare, autosomal recessive, pediatric, polysymptomatic,
grees, and affiliations are listed in the Ap- neurodegenerative disorder caused by biallelic loss-of-function variants in GAN, the
pendix. Dr. Bönnemann can be contact-
ed at ­carsten​.­bonnemann@​­nih​.­gov or at gene encoding gigaxonin.
the Neuromuscular and Neurogenetic
METHODS
Disorders of Childhood Section, National
Institute of Neurological Disorders and We conducted an intrathecal dose-escalation study of scAAV9/JeT-GAN (a self-com-
Stroke, National Institutes of Health, 35 plementary adeno-associated virus–based gene therapy containing the GAN trans-
Convent Dr., Rm. 2A-116, Bethesda, MD
20814.
gene) in children with giant axonal neuropathy. Safety was the primary end point.
The key secondary clinical end point was at least a 95% posterior probability of
*The members of the GAN Trial Team are
listed in the Supplementary Appendix,
slowing the rate of change (i.e., slope) in the 32-item Motor Function Measure total
available at NEJM.org. percent score at 1 year after treatment, as compared with the pretreatment slope.
Drs. Todd and Saade contributed equally RESULTS
to this article. One of four intrathecal doses of scAAV9/JeT-GAN was administered to 14 partici-
This article was updated on March 21, pants — 3.5×1013 total vector genomes (vg) (in 2 participants), 1.2×1014 vg (in 4),
2024, at NEJM.org. 1.8×1014 vg (in 5), and 3.5×1014 vg (in 3). During a median observation period of 68.7
N Engl J Med 2024;390:1092-104. months (range, 8.6 to 90.5), of 48 serious adverse events that had occurred, 1 (fever)
DOI: 10.1056/NEJMoa2307952 was possibly related to treatment; 129 of 682 adverse events were possibly related to
Copyright © 2024 Massachusetts Medical Society.
treatment. The mean pretreatment slope in the total cohort was −7.17 percentage
CME points per year (95% credible interval, −8.36 to −5.97). At 1 year after treatment,
at NEJM.org posterior mean changes in slope were −0.54 percentage points (95% credible in-
terval, −7.48 to 6.28) with the 3.5×1013–vg dose, 3.23 percentage points (95% credible
interval, −1.27 to 7.65) with the 1.2×1014–vg dose, 5.32 percentage points (95% cred-
ible interval, 1.07 to 9.57) with the 1.8×1014–vg dose, and 3.43 percentage points
(95% credible interval, −1.89 to 8.82) with the 3.5×1014–vg dose. The corresponding
posterior probabilities for slowing the slope were 44% (95% credible interval, 43 to
44); 92% (95% credible interval, 92 to 93); 99% (95% credible interval, 99 to 99),
which was above the efficacy threshold; and 90% (95% credible interval, 89 to 90).
Between 6 and 24 months after gene transfer, sensory-nerve action potential am-
plitudes increased, stopped declining, or became recordable after being absent in
6 participants but remained absent in 8.
CONCLUSIONS
Intrathecal gene transfer with scAAV9/JeT-GAN for giant axonal neuropathy was
associated with adverse events and resulted in a possible benefit in motor function
scores and other measures at some vector doses over a year. Further studies are
warranted to determine the safety and efficacy of intrathecal AAV-mediated gene
therapy in this disorder. (Funded by the National Institute of Neurological Disor-
ders and Stroke and others; ClinicalTrials.gov number, NCT02362438.)

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

G
iant axonal neuropathy is a rare, and phenotypically normal control animals (het-
rapidly progressive, monogenic, neuro- erozygous littermates).11,13-15 No dose-limiting
degenerative disease that has been iden- toxic effects were observed through the highest
tified in more than 75 families currently known dose tested in rats (6.6×1011 total vector genomes
to the study team.1 The disorder is caused by [vg] per animal). The construct successfully
biallelic pathogenic loss-of-function variants in transduced murine dorsal-root ganglia, decreased
GAN (16q23.2), which encodes gigaxonin, a ubiq- formation of intermediate filament aggregates,
uitously expressed Cul3 ubiquitin ligase adaptor reduced peripheral-nerve pathologic features,
protein.2 Gigaxonin is a low-abundance protein and rescued rotarod performance deficits in
that regulates intermediate filament turnover Gan-knockout mice.
in the central and peripheral nervous systems.3 Intrathecal AAV9-mediated gene transfer is
When functional gigaxonin is absent, pathologic primarily intended to target cell bodies of spinal
accumulation of intermediate filaments results cord motor neurons in the anterior horn and
in cellular inclusions and abnormal axonal sensory neurons in the dorsal-root ganglia,
swellings termed “giant axons,”4 which give the which would in turn affect their axons in the
disease its name. peripheral nerves and the central extension of
A prototypical, early-onset, progressive giant the dorsal-root ganglia. We present data from a
axonal neuropathy phenotype and a later-onset, phase 1 clinical study in which participants with
slower-progressing axonal Charcot–Marie–Tooth giant axonal neuropathy received a single intra-
disease–like giant axonal neuropathy phenotype thecal dose of scAAV9/JeT-GAN.
have been described5 as having a common genetic
mechanism of pathogenic biallelic GAN variants. Me thods
Peripheral axonal loss in giant axonal neuropa-
thy causes progressive sensorimotor neuropathy, Study Oversight
as indicated on electrophysiological testing and This ongoing, investigator-initiated, phase 1 study
histologic analysis of the peripheral nerves. Giant began on February 13, 2015. Natural history
axonal neuropathy typically manifests with ad- data for giant axonal neuropathy were obtained
ditional features of dry, tightly curled hair and in an observational study of various childhood
sensory ataxia in the first few years of life. The genetic nerve and muscle disorders (ClinicalTri-
disease course includes progressive, nerve length– als.gov number, NCT01568658). The protocols
dependent, sensorimotor neuropathy; cerebellar for the natural history study and the current
dysfunction; loss of unassisted independent am- clinical study were approved by the National
bulation by 8 to 10 years of age; vision loss; and Institutes of Health (NIH) intramural institu-
secondary systemic complications.5,6 Deficits in tional review board. Written informed consent
motor function are reflected by a uniform de- and assent were obtained before study proce-
cline in score on the 32-item Motor Function dures were initiated. An independent data and
Measure (MFM-32) across varying ages and am- safety monitoring board oversaw the safety of
bulatory statuses.7,8 The disorder is typically fatal, the study participants and adjudicated dose es-
often because of pulmonary complications, by calation. Hannah’s Hope Fund, a 501(c)(3) public
the third decade of life.1,9 charity, supported scAAV9/JeT-GAN manufactur-
Intrathecally administered adeno-associated ing at the University of North Carolina Vector
viral (AAV) vectors can transduce neurons and Core facility–Bamboo Therapeutics. The National
glia.10-12 We developed a self-complementary AAV Institute of Neurological Disorders and Stroke was
serotype 9 (scAAV9) vector that carries a codon- the regulatory sponsor through August 2022,
optimized human GAN transgene with expres- after which Taysha Gene Therapies assumed
sion controlled by the minimal synthetic recom- regulatory sponsorship.
binant JeT promoter consisting of five elements The first and second authors and the last
(see the Supplementary Appendix, available with (senior) author cowrote the first draft of the
the full text of this article at NEJM.org).13 The manuscript with subsequent input from the co-
agent, scAAV9/JeT-GAN, was tested intrathecally in authors and without commercial editorial assis-
preclinical proof-of-concept, dose-ranging, toxicol- tance. Commercial entity–affiliated authors pro-
ogy, and biodistribution studies in Gan-knockout vided support in statistical analyses and assay

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The n e w e ng l a n d j o u r na l of m e dic i n e

development and had confidentiality agreements The participants received a single lumbar in-
with Taysha Gene Therapies. The NIH academic trathecal infusion of scAAV9/JeT-GAN (total vol-
authors collaborated with Taysha Gene Thera- ume, 10.5 ml) at one of four dose levels: 3.5×1013
pies through a clinical trial agreement, which vg, 1.2×1014 vg, 1.8×1014 vg, or 3.5×1014 vg, as
included confidentiality terms. The NIH re- determined by means of reverse-transcriptase–
tained autonomy over the ability to submit the polymerase-chain-reaction assay, which was di-
study data for publication. All the investigators luted in 1× phosphate-buffered saline containing
were responsible for the design and implemen- 5% sorbitol to generate a total volume of 12 ml
tation of the study, which was conducted in (including overfill). Certificates of analysis for
accordance with the Good Clinical Practice the investigational product are provided in the
guidelines of the International Council for Har- Supplementary Appendix. All the participants
monisation, and the collection, analysis, and received concomitant immunomodulation with
interpretation of the data. The authors vouch for transient glucocorticoids (methylprednisolone
the accuracy and completeness of the data and and prednisone), and a subgroup also received
accurate reporting of adverse events and for the rapamycin. The participants who were predicted
fidelity of the study to the protocol, available at to be negative for CRIM received rapamycin and
NEJM.org. tacrolimus to mitigate the potential for T-cell–
mediated antitransgene immune response. Fur-
Participants and Study Procedures ther immunosuppression details are provided in
Participants older than 6 years of age with ge- Figure S1 and Table S1 in the Supplementary
netically confirmed giant axonal neuropathy Appendix.
were enrolled from April 2015 through August
2020. All the participants were first recruited to End Points
the observational natural history study after re- The primary safety end point was the incidence
ferral by a clinician or a parent or guardian and of serious adverse events during the safety ob-
were subsequently invited to participate in the servational period that were at least possibly re-
current study. Mean rates of change during the lated to scAAV9/JeT-GAN, as determined by the
natural history study, which were used for com- principal investigator (the last author) and re-
parison with the post-treatment values, were viewed by the data and safety monitoring board
determined from data collected from 17 study and an independent medical monitor. Discon-
visits across the participants. Among the par- tinuation criteria were the occurrence of the
ticipants, the duration of the natural history of same or similar unexpected serious adverse
the disease that was studied ranged from 3.7 to event that was at least possibly related to
31.5 months before dose administration. scAAV9/JeT-GAN in two or more participants or
The clinical study cohort included persons the occurrence of the same or similar unex-
who were predicted to have no residual gigaxo- pected grade 3 or higher adverse event that was
nin protein expression (cross-reactive immuno- at least possibly related to scAAV9/JeT-GAN in
logic material [CRIM] negative) and were thus three or more participants. Adverse events were
more likely to have an antibody response after assessed by means of physical examinations,
scAAV9/JeT-GAN treatment on the basis of GAN interim medical histories, magnetic resonance
genotype and persons who were AAV9 seroposi- imaging, and laboratory testing.
tive (serum neutralizing antibody titer, ≥1:5) or The key secondary efficacy end point at 1 year
seronegative at baseline, as confirmed by labora- after gene transfer was at least a 95% Bayesian
tory testing. Full eligibility criteria and methods posterior probability of slowing the rate of
are provided in the protocol. The number of change (referred to here as slope) in the MFM-32
participants recruited was based on feasibility total percent score, as compared with the mean
considerations owing to the rarity of the disor- slope during the pretreatment period, which was
der and availability of scAAV9/JeT-GAN. Doses determined in the entire cohort during the natu-
were administered to the participants sequen- ral history study. All the participants completed
tially after the safety of each dose level was the MFM-32 (for persons >6 years of age), which
adjudicated by the data and safety monitoring comprises three subdomains (standing and stand-
board. ing transfers, axial and proximal motor function,

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

and distal motor function tested in lying, sitting, group. Our slope estimates are shown as the
and standing positions).5,7,8 Each item is scored means of these posterior distributions derived
on a 4-point Likert scale from 0 (inability to from the observed data. Results are presented as
perform) to 3 (performing a task fully without Bayesian posterior probabilities and 95% credi-
assistance), for a total score ranging from 0 to ble intervals. There was no prespecified plan for
96. Results of the MFM-32 are reported as the adjustment of the widths of credible intervals
total percent score, which is calculated as the for multiple comparisons of outcomes across the
percentage of achieved points in all subdomains four dose groups or for secondary end points,
divided by the maximum obtainable score of 96 and no inferences can be drawn from these data.
points, with higher scores indicating better mo- Exploratory data are reported as individual re-
tor function. Physical therapists conducted the sponses and are described with summary statis-
MFM-32 at screening; at months 3, 6, 9, 12, and tics, as applicable. Analyses were performed with
18; and annually thereafter. R software, version 4.2.0, with the use of Open-
Other secondary end points included the score BUGS through the BRugs package. Additional
on the modified Friedreich Ataxia Rating Scale details are provided in the Supplementary Meth-
(mFARS; range, 0 to 93, with higher scores indi- ods in the Supplementary Appendix. The statisti-
cating worse function) and the Neuropathy Im- cal analysis plan is available with the protocol.
pairment Score (range, 0 to 244, with higher
scores indicating more impairment). Exploratory R e sult s
end points included compound motor-action
potential (CMAP) and sensory-nerve action po- Participant Characteristics
tential (SNAP) amplitudes in the upper extremity A total of 14 participants received one of four
(arms, wrists, and hands) and lower extremity doses of scAAV9/JeT-GAN: 3.5×1013 vg (2 partici-
(legs, ankles, and feet); findings from a histo- pants), 1.2×1014 vg (4 participants), 1.8×1014 vg (5
pathological analysis of regenerating cluster participants), or 3.5×1014 vg (3 participants) (Fig.
density in the superficial radial sensory nerve16; S2). The mean age of the participants at dose
immune responses (white-cell counts, AAV9 neu- administration was 9.1 years (range, 6.3 to 14.5).
tralizing antibody titer, gigaxonin and AAV9 These are the only patients we have treated with
reactive T-cell counts, and findings from shed- this agent. Baseline characteristics and immu-
ding studies), and scAAV9/JeT-GAN biodistribu- nomodulation regimens for each dose group are
tion in postmortem nervous system and periph- presented in Table 1 and Table S1, respectively.
eral tissue specimens from one participant. The mean slope of the curve for the MFM-32
Further details regarding the study end points total percent score in the entire cohort before
are provided in the Supplementary Appendix. treatment was −7.17 percentage points per year.

Statistical Analysis Primary Safety End Point


Safety and efficacy populations included all par- Through a median safety observation period of
ticipants. Bayesian efficacy analyses, stratified 68.7 months (range, 8.6 to 90.5), a total of 682
according to dose group, were conducted 1 year adverse events were recorded (Table 2). Two par-
after dose administration. Hierarchical models ticipants who received the lowest dose died from
for repeated measures were used to estimate events deemed by the principal investigator to be
posterior distributions for the change in slope at least possibly related to the underlying dis-
with respect to the key secondary and other ef- ease. One of the two participants had undergone
ficacy end points at each dose level, as compared spinal fusion surgery and died in the postopera-
with the mean pretreatment slope across the tive period after an episode of emesis-induced
dose groups. Pre- and post-treatment slopes aspiration followed by anoxemia, which result-
were estimated within a Bayesian framework ed in cardiac arrest and multiorgan failure 8
with the use of Markov chain Monte Carlo com- months after dose administration. The other par-
putational methods. The Bayesian hierarchical ticipant had recurrent pleural effusion in the
model included coefficients for the mean pre- setting of respiratory insufficiency, with respira-
treatment slope across the dose groups and the tory failure occurring 60 months after dose ad-
change in the slope after treatment in each dose ministration.

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The n e w e ng l a n d j o u r na l of m e dic i n e

Table 1. Demographic and Clinical Characteristics of the Participants at Baseline.*

Total Cohort
Characteristic scAAV9/JeT-GAN Dose Group (N = 14)

3.5×1013 vg 1.2×1014 vg 1.8×1014 vg 3.5×1014 vg


(N = 2) (N = 4) (N = 5) (N = 3)
Age at dose administration — yr 12.2±3.3 9.3±2.5 8.5±1.8 7.7±0.6 9.1±2.3
Female sex 1 (50) 2 (50) 4 (80) 2 (67) 9 (64)
Race or ethnic group†
American Indian or Alaska Native 0 0 0 0 0
Asian 0 0 0 0 0
Black 0 0 0 0 0
Native Hawaiian or other Pacific 0 0 0 0 0
Islander
White 2 (100) 4 (100) 4 (80) 3 (100) 13 (93)
Unknown or not reported 0 0 0 0 0
Other or multiple 0 0 1 (20) 0 1 (7)
Hispanic or Latino ethnic group†
Yes 0 0 2 (40) 2 (67) 4 (29)
No 2 (100) 4 (100) 3 (60) 1 (33) 10 (71)
CRIM positive‡ 2 (100) 3 (75) 3 (60) 2 (67) 10 (71)
CRIM negative 0 1 (25) 2 (40) 1 (33) 4 (29)
AAV9 seropositive§ 1 (50) 1 (25) 2 (40) 2 (67) 6 (43)
Motor function¶
MFM-32 total percent score 42.7±4.4 52.9±13.7 71.2±7.5 71.2±7.1 61.9±14.3
mFARS score 64.0±4.2 58.9±11.1 40.1±11.2 35.3±3.9 47.3±14.1
Neuropathy Impairment Score 146.4±17.5 115.1±17.3 83.1±13.2 96.1±19.4 104.1±26.5
Ambulatory status
Ambulant 0 0 2 (40) 1 (33) 3 (21)
Ambulant with assistance only 0 3 (75) 3 (60) 2 (67) 8 (57)
Nonambulant 2 (100) 1 (25) 0 0 3 (21)
Pulmonary function
Forced vital capacity — % of 68.5±4.9 91.8±14.1 78.8±17.9 105.3±4.9 86.7±17.7
predicted value
Pulmonary support‖
None 2 (100) 3 (75) 4 (80) 3 (100) 12 (86)
Nocturnal BiPAP 0 1 (25) 1 (20) 0 2 (14)
Neurophysiological study — CMAP or
SNAP amplitude
Median CMAP, abductor pollicis 1.7±0.6 2.1±0.5 4.0±1.9 2.7±2.2 2.9±1.7
brevis
Peroneal CMAP, tibialis anterior 0.1±0.0 0.9±0.6 2.2±1.8 1.7±0.9 0.1±0.1
Median SNAP 0.0±0.0 1.8±3.5 0.7±1.6 0.9±1.6 1.0±2.1
Ulnar SNAP 0.0±0.0 0.5±1.0 0.0±0.0 1.3±1.8 0.4±1.0
Sural SNAP 0.0±0.0 0.0±0.0 0.0±0.0 1.7±2.9 0.4±1.3
Visual function: reduced visual acuity** 1 (50) 2 (50) 0 0 3 (21)

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

Table 1. (Continued.)

* Plus–minus values are means ±SD. The investigational biologic product scAAV9/JeT-GAN is a self-complementary adeno-associated viral
serotype 9 vector that carries a codon-optimized human GAN transgene with expression controlled by the minimal synthetic recombinant
JeT promoter consisting of five elements. APB denotes abductor pollicis brevis, and BiPAP bilevel positive airway pressure, CMAP compound
motor-action potential, and SNAP sensory-nerve action potential.
† Race and ethnic group were reported by the participant or a parent of the participant.
‡ Cross-reactive immunologic material (CRIM) positivity refers to participants who were predicted to produce some residual gigaxonin protein
on the basis of their GAN genotype.
§ AAV9 seropositivity was defined as a serum neutralizing antibody titer of 1:5 or greater.
¶ Results of the 32-item Motor Function Measure (MFM-32) scale are reported as the total percent score, which is calculated as the per-
centage (0 to 100%) of achieved points in all subdomains divided by the maximum obtainable score of 96 points, with higher scores
indicating better motor function. Scores on the modified Friedreich Ataxia Rating Scale (mFARS) range from 0 to 93, with higher scores
indicating worse function). Neuropathy Impairment Scores range from 0 to 244, with higher scores indicating more impairment.
‖ Patients who required daytime ventilatory assistance or invasive ventilatory assistance were not included in this study.
** Visual acuity was considered to be reduced at study entry if the best-corrected visual acuity in either eye corresponded to a log10 of the
minimal angle of resolution of worse than 0.5.

A total of 48 serious adverse events were re- leukocytosis (12 events in 8 participants), throm-
corded during the safety observation period. The bocytosis (11 events in 7 participants), and head-
most common of these events were scoliosis (in ache (7 events in 7 participants) (Table S3). Two
9 participants), urinary tract infection (in 6), and participants in the 3.5×1014 vg–dose group had
upper respiratory tract infection (in 5) (Table mild elevations in hepatic transaminase levels
S2). One serious adverse event, fever with eme- that were possibly related to scAAV9/JeT-GAN; a
sis, occurred 2 weeks after dose administration single instance of an elevated aspartate amino-
in a participant who was predicted to have re- transferase level (50 U per liter) was recorded in
sidual gigaxonin expression (CRIM positive) on 1 participant, and 3 instances of an elevated ala-
the basis of the GAN genotype; this participant nine aminotransferase level (range, 32 to 37 U per
received an scAAV9/JeT-GAN dose of 3.5×1014 vg. liter) were recorded in 2 participants. Mild eleva-
In the same participant, elevations in levels of tions in the alkaline phosphatase level (range,
C-reactive protein (grade 3) and B-type natri- 140 to 194 U per liter) were recorded in 5 par-
uretic peptide (grade 1) were also possibly re- ticipants who received a dose between 1.2×1014
lated to scAAV9/JeT-GAN. These events resolved vg and 3.5×1014 vg; these elevations were not at-
within 48 hours, and the participant was dis- tributed to scAAV9/JeT-GAN.
charged after intravenous fluid treatment for
emesis-related dehydration. One participant who Clinical End Points
received an scAAV9/JeT-GAN dose of 1.8×1014 vg The mean change in the slope of the curve of the
had a grade 3 exacerbation of benign familial MFM-32 total percent score was −0.54 percent-
neutropenia 3 days after dose administration; age points per year in the 3.5×1013 vg–dose
the exacerbation resolved 8 days later. Serious group, 3.23 percentage points per year in the
adverse events leading to hospitalization that 1.2×1014 vg–dose group, 5.32 percentage points
were possibly related to glucocorticoids in the per year in the 1.8×1014 vg–dose group, and 3.43
immunosuppressive regimen included grade 1 percentage points per year in the 3.5×1014 vg–dose
pneumonia, which resolved 9 days later; grade 3 group (signifying a numerical change in a posi-
skin infection, which was débrided and treated tive direction for the last three dose groups)
with antibiotics, resolving 30 days later (nail bit- (Table 3 and Fig. S3). Only the 1.8×1014 vg–dose
ing was a contributing factor), and grade 3 bone group met the prespecified efficacy threshold at
infection, which resolved 47 days later (foot 1 year, with a posterior probability of any change
bracing was a contributing factor). in the slope, as compared with the pretreatment
Of the 682 adverse events that occurred dur- slope across dose groups, of 99% (95% credible
ing the safety observation period, 129 were interval, 99 to 99). The results for the other three
deemed to be at least possibly related to scAAV9/ dose groups were below the threshold. The re-
JeT-GAN, including cerebrospinal fluid (CSF) sults for the change in the slope of the curve of
pleocytosis (14 events in 13 participants), an elevat- the mFARS score and the Neuropathy Impair-
ed CSF IgG index (14 events in 13 participants), ment Score, as compared with the pretreatment

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Table 2. Adverse Events That Occurred during the Safety Observation Period.*

1098
Total Cohort
Event scAAV9/JeT-GAN Dose Group (N = 14)
3.5×1013 vg 1.2×1014 vg 1.8×1014 vg 3.5×1014 vg
(N = 2) (N = 4) (N = 5) (N = 3)
no. of no. of no. of no. of no. of
no. of participants no. of participants no. of participants no. of participants no. of participants
events (%) events (%) events (%) events (%) events (%)
Any adverse event 78 2 (100) 237 4 (100) 235 5 (100) 132 3 (100) 682 14 (100)
Any serious adverse event 16 2 (100) 18 4 (100) 10 5 (100) 4 3 (100) 48 14 (100)
Any adverse event of special interest† 20 2 (100) 48 4 (100) 62 5 (100) 39 3 (100) 169 14 (100)
Adverse event at least possibly 13 2 (100) 34 4 (100) 53 5 (100) 29 3 (100) 129 14 (100)
related to scAAV9/JeT-GAN‡
Adverse event at least possibly 11 2 (100) 39 4 (100) 70 5 (100) 24 3 (100) 144 14 (100)
related to prednisone
The

Adverse event at least possibly 44 2 (100) 136 4 (100) 133 5 (100) 48 3 (100) 361 14 (100)
related to disease
Common adverse events§
Abnormal vital capacity 5 2 (100) 11 4 (100) 12 5 (100) 2 3 (66) 30 13 (93)
CSF white-cell pleocytosis† 2 2 (100) 4 4 (100) 5 4 (80) 3 3 (100) 14 13 (93)

n engl j med 390;12


Upper respiratory tract infection 4 2 (100) 8 4 (100) 7 4 (80) 4 2 (66) 23 12 (86)
Acidosis 2 2 (100) 7 3 (75) 5 4 (80) 2 2 (66) 16 11 (79)
Hyperglycemia 4 2 (100) 8 4 (100) 7 4 (80) 1 1 (33) 20 11 (79)
Headache 1 1 (50) 3 2 (50) 9 5 (100) 4 2 (66) 17 10 (71)

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Elevated CRP level† 2 1 (50) 3 3 (75) 3 3 (60) 2 2 (66) 10 9 (64)
n e w e ng l a n d j o u r na l

Thrombocytosis 0 0 6 4 (100) 5 2 (40) 7 3 (100) 18 9 (64)

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of

Leukocytosis 2 1 (50) 4 2 (50) 5 3 (60) 4 2 (66) 15 8 (57)


Intracranial hypertension† 1 1 (50) 1 1 (25) 5 4 (80) 2 2 (66) 9 8 (57)
Elevated CSF IgG index† 2 2 (100) 4 4 (100) 4 4 (80) 4 3 (100) 14 13 (93)

March 21/28, 2024


Cough 0 0 4 3 (75) 5 3 (60) 1 1 (33) 10 7 (50)
m e dic i n e

Scoliosis 2 2 (100) 5 4 (100) 3 2 (40) 2 2 (66) 10 7 (50)


Urinary tract infection 5 1 (50) 14 4 (100) 2 1 (20) 5 2 (66) 26 7 (50)

* The median safety observation period was 34.3 months (range, 8.6 to 60.1) in the 3.5×1013 vg–dose group, 87.6 months (range, 80.2 to 90.5) in the 1.2×1014 vg–dose group, 70.5
months (range, 63.7 to 83.5) in the 1.8×1014 vg–dose group, 42.9 months (range, 37.1 to 46.6) in the 3.5×1014 vg–dose group, and 68.7 months (range, 8.6 to 90.5) in the total cohort.

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CRP denotes C-reactive protein, and CSF cerebrospinal fluid.

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† Adverse events of special interest included laboratory, radiographic, or clinical signs or symptoms of neuroinflammation, peripheral or systemic inflammation (including but not
limited to thrombocytopenia, thrombotic microangiopathy, myocarditis, transaminitis, and acute kidney injury), increased intracranial pressure, or new sensory disturbance suggestive
of dorsal-root ganglion inflammation.
‡ Relatedness to scAAV9/JeT-GAN was determined by the principal investigator and reviewed by the independent data safety monitoring board.
§ Common adverse events were those that occurred in more than 50% of the study participants.
Intr athecal Gene Ther apy for Giant Axonal Neuropathy

slope, were varied; the posterior probability of scAAV9/JeT-GAN in Gan-knockout mice13; how-
any change in the slope was at least 95% in the ever, vector genomes and biodistribution to the
1.2×1014 vg–dose group, but the probabilities in dorsal-root ganglia and peripheral tissues was
the other three dose groups were below this lower than expected (Fig. 2A and 2B). Inflam-
threshold (Table 3). The slopes for these end matory infiltrates were absent in the limited
points are presented in Table S5, and long-term dorsal-root ganglia samples available or in the
follow-up data are presented descriptively (Figs. cervical spinal cord samples (Fig. 2C and 2E,
S4 through S7). Data were not adjusted for respectively). Giant axons, which are typical of
multiple comparisons, precluding any definitive this disorder, were present in the fasciculus
conclusions. gracilis of the cervical spinal cord samples
Median SNAP amplitudes increased, stopped (Fig. 2E).
declining, or became recordable after being ab-
sent in 5 participants (Fig. 1A) but remained Immunologic Response
absent in 8 participants; a detectable median Clinically asymptomatic, lymphocyte-predominant
SNAP amplitude that was observed in 1 partici- CSF pleocytosis was identified in 13 participants
pant in the natural history study was subsequent- on routine scheduled CSF examinations by 3 to
ly undetectable at baseline and after gene trans- 6 months after dose administration (Fig. S1).
fer. Between 6 and 24 months after gene transfer, These increases were self-limited and abated by
ulnar SNAP amplitudes increased, stopped de- 1 year after dose administration (Fig. S13C).
clining, or became recordable after being absent Serum and CSF neutralizing antibody titers to
in 6 participants (Fig. 1B) but remained absent in AAV9 increased after scAAV9/JeT-GAN adminis-
8 participants. The sural sensory response was tration, persisted to 1 year after dose adminis-
attainable in only 2 participants at baseline but tration (Fig. S13A and S13B), and remained ele-
was not recordable during follow-up (Fig. S8). vated in serum samples through 6 years after
Motor nerve responses, as recorded in the distal dose administration (Table S4). A total of 12
upper and lower extremities, showed a decline in participants had increased T-cell interferon-γ
CMAP amplitude both before and after gene responses to AAV9 capsid peptide pools within
transfer (Figs. S9, S10, and S11). 24 months after scAAV9/JeT-GAN administra-
A total of 11 pairs of nerve-biopsy specimens, tion (Fig. S14). T-cell interferon-γ responses to
obtained from the superficial radial sensory peptide pools of gigaxonin (encoded by the
nerve, were suitable for evaluation of regenerat- transgene) after gene transfer were negative. The
ing cluster quantification. At 1 year after dose participants who received rapamycin, with or
administration, among 8 participants, the re- without additional tacrolimus, had a diminished
generating cluster density in the superficial radial
AAV9 capsid interferon-γ response as compared
sensory nerve was 3 to 48 times as high as that with the participants without T-cell immuno-
at baseline (Fig. S12). modulation (Fig. S14). The level of serum neu-
tralizing antibodies was elevated earlier and
Biodistribution, Transgene Expression, and vector clearance occurred faster among the par-
Postmortem Analysis ticipants who were seropositive for AAV9 neu-
In the postmortem specimens obtained from tralizing antibodies at baseline than among the
one participant who received the lowest dose and seronegative participants (Fig. S15).
died from disease progression, nervous system
biodistribution was limited, with the greatest Discussion
distribution closest to the injection site (range,
0.05 to 0.45 copies of human codon-optimized In a phase 1 study involving children with giant
GAN [hGANopt] per host diploid genome in the axonal neuropathy, intrathecal administration of
spinal cord and <0.01 hGANopt per host diploid an AAV vector with a gigaxonin-encoding trans-
genome in most brain regions) (Fig. 2A). Trans- gene up to a single maximum dose of 3.5×1014
gene messenger RNA (mRNA) expression was vg was associated with adverse events but showed
detectable but often near the lower limit of de- a possible clinical benefit in motor function at
tection of the assay (Table S6). This finding was 1 year after gene transfer, as indicated by a change
consistent with that in a preclinical study of in the slope for a motor function measure (a

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The n e w e ng l a n d j o u r na l of m e dic i n e

Table 3. Clinical Efficacy End Points at 1 Year after Gene Transfer.*

End Point scAAV9/JeT-GAN Dose Group

3.5×1013 vg 1.2×1014 vg 1.8×1014 vg 3.5×1014 vg


(N = 2) (N = 4) (N = 5) (N = 3)
MFM-32 total percent score
Mean change in slope from baseline to 1 yr after −0.54 3.23 5.32 3.43
dose administration (95% credible interval) (−7.48 to 6.28) (−1.27 to 7.65) (1.07 to 9.57) (−1.89 to 8.82)
— percentage points per year
Posterior probability of any slowing of the slope, 44 (43 to 44) 93 (92 to 93) 99 (99 to 99)† 90 (89 to 90)
as compared with the pretreatment slope
(95% credible interval) — %
mFARS score
Mean change in slope from baseline to 1 yr after −8.69 −8.89 −3.50 −12.74
dose administration (95% credible interval) (−20.05 to 2.76) (−16.10 to −1.77) (−10.55 to 3.50) (−21.66 to −3.72)
— points per year
Posterior probability of any slowing of the slope, 93 (93 to 94) 99 (99 to 99)† 84 (83 to 85) 100 (100 to 100)†
as compared with the pretreatment slope
(95% credible interval) — %
Neuropathy Impairment Score
Mean change in slope from baseline to 1 yr after −2.02 −13.73 −4.46 10.59
dose administration (95% credible interval) (−20.04 to 16.20) (−24.46 to 3.11) (−15.59 to 6.51) (−3.04 to 24.28)
— points per year
Posterior probability of any slowing of the slope, 59 (58 to 60) 99 (99 to 100)† 79 (78 to 80) 6 (6 to 7)
as compared with the pretreatment slope
(95% credible interval) — %

* Bayesian efficacy analyses, stratified according to dose group, were conducted 1 year after dose administration. The term slope refers to the
rate of change in the curve of a motor function measure. The pretreatment slope represents the rate of change in the natural history of the
disease, which was determined in the entire cohort during the observational study (ClinicalTrials.gov number, NCT01568658). The mean
pretreatment slopes across the dose groups were −7.17 percentage points per year (95% credible interval, −8.36 to −5.97) for the MFM-32,
6.09 points per year (95% credible interval, 3.23 to 8.93) for the mFARS, and 1.85 points per year (95% credible interval, 2.49 to 6.25) for
the Neuropathy Impairment Score. The prespecified threshold for a positive result was a posterior probability of at least 95%. The widths of
credible intervals for the change in slope from baseline to 1 year after dose administration, as compared with the pretreatment slope, were
not adjusted for multiple comparisons, and no definite conclusions can be drawn from the results.
† This finding met the prespecified threshold for efficacy, with a posterior probability of at least 95%.

secondary end point). In a prespecified Bayesian gene therapy in which weight-based doses were
analysis with a probability threshold for an ef- administered.19,20 Despite receiving a lower total
fect of at least 95%, the criterion was met in one dose through intrathecal administration, all the
of four dose groups; however, these results were participants had persistently elevated serum and
not adjusted for multiplicity. The results for CSF AAV9 neutralizing antibody levels after dose
other measures of clinical performance were administration. This finding suggests that im-
varied in a comparison with baseline scores. munosuppression did not prevent an adaptive
Disease manifestations (e.g., visual impairment) humoral anticapsid response; therefore, in pa-
are not captured by the motor function measure. tients who have undergone gene transfer, sys-
To our knowledge, the Neuropathy Impairment temic and probably intrathecal readministration
Score, a secondary end point in the study, has is most likely precluded in current or future
not been formally validated in children, which studies.
may be a contributory factor to the varied re- The CSF pleocytosis observed in these partici-
sponses observed.18 pants may have been responsive to glucocorti-
The dose (total vector genomes) of scAAV9/ coids, but the condition did not appear to alter
JeT-GAN that was administered intrathecally in anti-AAV9 capsid humoral or T-cell–mediated im-
this study resulted in lower exposure than in mune responses. There were no clear antitrans-
some other studies of systemic neuromuscular gene T-cell immune responses in the participants

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

Figure 1. Electrophysiological Changes after Gene 1.2×1014 vg 1.8×1014 vg 3.5×1014 vg


Transfer.
Panel A shows the antidromic median sensory-nerve A Median SNAP Amplitude from Digit II in 6 Participants
action potential (SNAP) amplitude from digit II in six par- 20
ticipants before and after gene transfer (marked as time
0 on the x axis). Emergence of a previously absent SNAP
amplitude response was observed in two participants (at
12 months and 18 months after gene transfer), and an
increase in a low but detectable median SNAP amplitude 15
was observed in two participants. Stable ongoing detec-

Median SNAP Amplitude (µV)


tion of a median SNAP amplitude to at least 6 years after
gene transfer was observed in one participant. One par-
ticipant had a detectable median SNAP amplitude in the
natural history study that was subsequently undetectable
10
at baseline and after gene transfer. The remaining eight
participants in the study had a persistently absent median
SNAP amplitude. The abbreviation vg denotes total vec-
tor genomes. Panel B shows the antidromic ulnar SNAP
amplitude from digit V in 6 participants. Emergence
of a previously absent SNAP amplitude response or an 5
increase in the ulnar SNAP amplitude by 6 to 24 months
after gene transfer was observed in five participants.
One participant had a persistent and stable ulnar SNAP
amplitude to 6 years after gene transfer. The remaining
eight participants had a persistently absent ulnar SNAP 0
amplitude. Additional motor responses in the upper and −4 −2 0 2 4 6
lower extremities and sensory responses in the lower Years before and after Gene Transfer
extremity are shown in Figures S8 through S11 in the
Supplementary Appendix. A median SNAP amplitude B Ulnar SNAP Amplitude from Digit V in 6 Participants
(Panel A) and an ulnar SNAP amplitude (Panel B) of 50
greater than 15 μV were derived at the electromyography
laboratory of the National Institutes of Health as the
normal value on the basis of data from adults; normal
values in children older than 5 years of age have been
found to be generally similar to those in adults.17 40
Ulnar SNAP Amplitude (µV)

predicted to be negative for CRIM (transgene- 30


naive) who received concomitant tacrolimus and
rapamycin, even though these participants were
at higher risk for such a response.21 These partici-
pants also had a lower interferon-γ T-cell immune 20

response to capsid than those who did not receive


T-cell immunomodulation. The participants who
received the highest dose of scAAV9/JeT-GAN
10
(3.5×1014 vg) and at least transient rapamycin
therapy had a higher AAV9 copy number in the
blood, as well as a longer period with a higher
copy number, than those in the lower-dose groups, 0
−4 −2 0 2 4 6
potentially leading to a longer systemic persis-
tence of the virus. Years before and after Gene Transfer

The scAAV9/JeT-GAN vector DNA and GAN


transgene expression were broadly distributed and low transgene mRNA expression was like-
throughout the nervous system in a postmortem wise consistent with the intentional use of the
evaluation of a single seropositive participant who weak JeT promoter.13 As expected, because of the
received the lowest dose. Gene transfer levels proximity of the spinal cord to the intrathecal
were consistent with expectations at this dose, site of administration of the agent, distribution

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The n e w e ng l a n d j o u r na l of m e dic i n e

A Biodistribution in Nervous System B Biodistribution in Peripheral Tissue

Cerebral Cortex Mid Phrenic


Optic Nerve Right Radial Nerve
Thalamus
Intercostal 1
Basal Ganglia
Cerebellum Intercostal 2

Lateral Mid Brain Anterior


Diaphragm
C6 SC
Skeletal Muscle
C6 DRG
Iliopsoas
C6 DR
C7 SC Heart

C8 DRG Lung
Cervical Nerve
Pancreas
Thoracic SC
Liver
T1 DRG
Sympathetic Chain Spleen
L1 DRG Small Intestine
L4 DRG
Large Intestine
L4 DR Mid
Kidney
L4 VR Mid
L4 VR Prox Bladder
L5 SC Ovary
Sacral SC Upper
Thyroid
Sacral SC Mid or Lower
Sacral VR Uterus

Sacral DR Skin

0 0.1 0.2 0.3 0.4 0.5 10−4 10−3 10−2 10−1 100 101
Copies of hGANopt Copies of hGANopt
per Human Genome per Human Genome

C DRG Sample from a Participant D DRG Sample from a Control E Cervical Spinal Cord Sample from a
Participant

* *
*

* * N
* *
* N
*
* *

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

Figure 2 (facing page). Postmortem Nerve Pathology the upper extremity in 6 of 14 participants by 6
and Biodistribution 8 Months after Intrathecal Gene to 24 months after dose administration and per-
Transfer. sistent or increased SNAP amplitudes through 6
Panels A and B show scAAV9/JeT-GAN biodistribution years after dose administration was unexpected.
in postmortem nervous-system and peripheral-tissue There was, however, no electrophysiological re-
specimens, respectively, in a participant with giant axo-
covery in the motor nerves. Regenerating nerve
nal neuropathy 8 months after receiving the lowest intra-
thecal dose of scAAV9-JeT-GAN (3.5×1013 vg). This par- cluster density among the participants was var-
ticipant had undergone spinal fusion surgery and died ied at baseline (7 to 473 regenerative clusters per
in the postoperative period after an episode of emesis- square millimeter of subperineurial area); how-
induced aspiration followed by anoxemia, which resulted ever, this value had generally increased at 1 year
in cardiac arrest and multiorgan failure. Quantitative
after dose administration, a finding that reca-
polymerase-chain-reaction analysis of human codon-
optimized gigaxonin (hGANopt) was used to assess vector pitulates observations in intrathecally treated
DNA biodistribution. C denotes cervical, DR dorsal root, Gan-knockout mice.13
DRG dorsal-root ganglia, L lumbar, Mid anatomical mid- In this phase 1 study of intrathecal gene
dle section along length of given tissue, Prox proximal, transfer with scAAV9/JeT-GAN in persons with
SC spinal cord, T thoracic, and VR ventral root. Panels C
giant axonal neuropathy, there were some indi-
and D show photomicrographs of DRG samples (1-μm
sections stained with toluidine blue; original magnifica- cations of therapeutic benefit in motor function
tion, 40×) from a participant with giant axonal neuropa- scores and electrophysiological measures. Further
thy and an age-matched control without the disorder, studies are warranted to determine the safety and
respectively. Postmortem fixation artifact (evidenced by efficacy of this approach in patients with giant
satellite-cell vacuolation [asterisks]) was present in both
axonal neuropathy.
samples, but there was no evidence of neuronal loss or
inflammation. N denotes neuron (one of several). Panel E The content of this article is solely the responsibility of the
authors and does not necessarily represent the official views
shows a photomicrograph of postmortem cervical spinal
of the National Institutes of Health or the American Society of
cord sample (resin-embedded tissue section stained Gene and Cell Therapy.
with hematoxylin and eosin; original magnification, 40×) Supported by the National Institute of Neurological Disorders
from a study participant with typical giant axonal neuropa- and Stroke (NINDS), Division of Intramural Research, National
thy. Numerous giant axons (arrows) were present in the Institutes of Health (NIH); Hannah’s Hope Fund; Taysha Gene
fasciculus gracilis. There was no evidence of inflamma- Therapies; and Bamboo Therapeutics–Pfizer. Dr. Gray is supported
tory infiltrates. by a grant (R01 NS087175) from NINDS; Dr. Bharucha-Goebel, by
a grant (5T32AR056993) from the National Institute of Arthritis
and Musculoskeletal and Skin Diseases, NIH, a Child Neurology
Society Philip R. Dodge Young Investigator Award, and an Ameri-
in the spinal cord was higher than in most brain can Society of Gene and Cell Therapy Career Development Award;
regions, and it is possible that higher doses than Dr. Sumner, by a grant (R35NS122306) from NINDS; and Dr. Kang,
by a grant (Z-A1000989) from the National Institute of Allergy
those used in the study may be necessary to treat and Infectious Diseases, Division of Intramural Research, NIH.
the brain. The presence of vector DNA in the Disclosure forms provided by the authors are available with
spinal cord was consistent with findings in pre- the full text of this article at NEJM.org.
A data sharing statement provided by the authors is available
clinical studies and showed target engagement. with the full text of this article at NEJM.org.
Expected giant axonal neuropathy–related find- We thank the study participants and their families for partici-
ings were observed in the peripheral nervous pating in the natural history study and clinical study; the staff at
the Hannah’s Hope Fund, the NIH Clinical Center, the NINDS
system and ascending sensory tracts. In these Clinical Trials Unit, the NINDS Office of Technology Trans-
regions, there was no histologic evidence of lym- fer, Taysha Gene Therapies, the Immunology Core of the Gene
phocytic infiltration or neuroinf lammation to Therapy Program at the University of Pennsylvania, the Johns
Hopkins Neuromuscular Pathology Laboratory, the University
suggest scAAV9/JeT-GAN-induced toxic effects. of North Carolina at Chapel Hill Vector Core–Pfizer, and the
There is no assay to quantify GAN protein ex- Children’s Inn at NIH; Drs. Kenneth Fischbeck (NINDS), Beverly
pression owing to the difficulty in generating a Davidson (University of Pennsylvania), Barry Byrne (University
of Florida), Thomas Crawford (Johns Hopkins University), and
specific antibody that recognizes gigaxonin. Kevin Flanigan (Nationwide Children’s Hospital) for serving as
Loss of SNAP amplitude responses in the me- data and safety monitoring board members; Drs. Mary-Kay Flo-
dian and ulnar nerves occurs early in the disorder eter and Justin Kwan for serving as independent medical moni-
tors; and Dr. Jeffrey P. Palmer (Rare Disease Research Unit,
and, in our anecdotal experience, does not re- Pfizer) for encouraging the use of a Bayesian framework in the
emerge. Thus, restoration of sensory responses in analysis of the study data.

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Intr athecal Gene Ther apy for Giant Axonal Neuropathy

Appendix
The authors’ full names and academic degrees are as follows: Diana X. Bharucha‑Goebel, M.D., Joshua J. Todd, Ph.D., Dimah Saade,
M.D., Gina Norato, Sc.M., Minal Jain, D.Sc., P.T., Tanya Lehky, M.D., Rachel M. Bailey, Ph.D., Jessica A. Chichester, Ph.D., Roberto
Calcedo, Ph.D., Diane Armao, M.D., A. Reghan Foley, M.D., Payam Mohassel, M.D., Eshetu Tesfaye, Ph.D., Bradley P. Carlin, Ph.D.,
Beth Seremula, M.S., Melissa Waite, M.S.P.T., Wadih M. Zein, M.D., Laryssa A. Huryn, M.D., Thomas O. Crawford, M.D., Charlotte J.
Sumner, M.D., Ahmet Hoke, M.D., Ph.D., John D. Heiss, M.D., Lawrence Charnas, M.D., Ph.D., Jody E. Hooper, M.D., Thomas W.
Bouldin, M.D., Elizabeth M. Kang, M.D., Denis Rybin, Ph.D., Steven J. Gray, Ph.D., and Carsten G. Bönnemann, M.D.
The authors’ affiliations are as follows: the Neuromuscular and Neurogenetic Disorders of Childhood Section (D.X.B.-G., J.J.T., D.S.,
A.R.F., P.M., C.G.B), National Institute of Neurological Disorders and Stroke (G.N., T.L., J.D.H.), the Rehabilitation Medicine Depart-
ment, Clinical Center (M.J., M.W.), National Eye Institute (W.M.Z., L.A.H.), and the National Institute of Allergy and Infectious Dis-
eases, Division of Intramural Research (E.M.K.), National Institutes of Health, Bethesda, and the Departments of Neurology (C.J.S.,
A.H., T.O.C.), Neuroscience (C.J.S., A.H.), and Pediatrics (T.O.C.), Johns Hopkins University School of Medicine, Baltimore — all in
Maryland; Children’s National Hospital, Washington, DC (D.X.B.-G.); the University of Iowa, Iowa City (D.S.); the Department of Pe-
diatrics and Center for Alzheimer’s and Neurodegenerative Diseases, University of Texas Southwestern Medical Center (R.M.B, S.J.G.),
and Taysha Gene Therapies (E.T.) — both in Dallas; the Gene Therapy Program, University of Pennsylvania Perelman School of Medicine,
Philadelphia (J.A.C.), Cencora PharmaLex, Conshohocken (B.P.C.), and Atorus Research, Newtown Square (B.S.) — all in Pennsylvania;
Affinia Therapeutics, Waltham (R.C.), and the Rare Disease Research Unit, Pfizer, Cambridge (L.C., D.R.) — both in Massachusetts; the
Departments of Pathology and Laboratory Medicine (D.A., T.W.B.) and Radiology (D.A.), University of North Carolina at Chapel Hill
School of Medicine, Chapel Hill; and the Department of Pathology, Stanford University School of Medicine, Stanford, CA (J.E.H.).

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