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Oxford Revision Notes MCROG - Microbioogy (With Wesmosis Notes)
Oxford Revision Notes MCROG - Microbioogy (With Wesmosis Notes)
Oxford Revision Notes MCROG - Microbioogy (With Wesmosis Notes)
CONTENTS
Bacteria 283
Fungi 293
Protozoa 294
Viruses 296
B a c te ria
1. B acteria
• A re prokaryotic (i.e. have no m em brane-bound organelles)
• Can be classified into 3 main groups (Box 9.1)
2 . T axon om y
• By shape
i. Bacilli (rods)
ii. C o cci (grains)
• By 0 2 requirem ent
i. A erobes
ii. A naerobes
284 C h a p te r 9 Microbiology ' 1
• By sp o re forming
• By staining
4. G ram stain
• Process involves
i. Staining with crystal violet
ii. Then staining with G ram ’s Iodine
iii. Decolourizing with aceton e
iv. Counter-stain with methyl red
• Gram -positive bacteria
i. Stain blue — retain crystal violet stain
ii. Stain due to peptidoglycan - a thick polysaccharide co at that loses stain very slowly once
taken up
iii. Include (Box 9.2)
• Klebsiella • Pseudomonas
• ' Ebc ‘ : ' 1 • Salmonella
• Enterobacter • Shigella
• C itrobacter • Yersinia
• Salmonella
• Helicobacter pylori
• Proteus
B o x 9.4 Strep to cocci classification according t o haemolysis when cultured on horse blood agar
3. G roup A streptococcus
• Also known as Streptococcus pyogenes
• Virulence factor is determ ined by th e presence o f
i. M protein
ii. Hyaluronidase
iii. Streptokinase
iv. D N A se
v. Superantigens
• M-protein is
i. A fimbrial protein
ii. Involved in capsule form ation
iii. Is anti-phagocytic
iv. Involved in destroying C 3 convertase and preventing opsonization by C 3b
v. Responsible fo r organism adhesion and invasion
• Causes
i Scarlet fever
jj T oxic shock
jjj_ Rheumatic fever
iv. Glom erulonephritis
v. Necrotizing fasciitis
4 Group B s tre p to c o c c u s (G B S )
• Also known as Streptococcus agalactia
• Maternal carriage
■ IT i- 2 0 -3 5 % carry GBS
ii. Interm ittent carriage
• Fetal
j. Maternal to fetal colonization rate = 80%
ii. Invasive neonatal disease occurs in 0.5 : 1000 births
iii. N eonatal m ortality from early-onset GBS disease in UK is 6%
• Indications fo r antibiotic prophylaxis during labour (following a risk-based
approach)
i. Early-onset G BS disease in a previous baby
ii. GBS found in vagina/urine during index pregnancy
iii. Prolonged rupture o f m em branes at term (> 1 8 h )
iv. Preterm labour < 3 7 com pleted w eeks o f gestation
v. Preterm rupture o f m em branes with known GBS
vi. Intrapartum pyrexia
• Antibiotic regimens
i. Benzylpenicillin
■ 3 g i.v. loading d ose follow ed by
■ Benzylpenicillin 1.5 g i.v. 4 hourly until delivery
ii. Clindamycin 9 0 0 mg i.v. 8 hourly until delivery
iii. Erythromycin 5 00 mg 6 hourly until delivery
iv. Vancomycin as a very last resort
5. Streptococcus pneumoniae
• Is a diplococcus (form s pairs)
• Forms draughtsman-shaped colonies
• Is optochin sensitive
• Is bile soluble
• Causes
i. Meningitis
ii. Pneumonia
iii. Primary bacterial peritonitis (in prepubertal girls)
Enterococcus genus
• Consists o f 2 species
i. Enterococcus faecalis
ii. Enterococcus faecium
• A re gastrointestinal com m ensal organisms
• A re resistant to many antimicrobials
• Causes
i. Endocarditis
ii. Proctitis
• Can be haemotytic o r non-haemolytic - used to be classified as group D
288 C h a p te r 9 Microbiology .
7. Listeria monocytogenes
• A ffects 1 : 1 0 0 0 0 pregnant wom en
• Som e strains are (3-haemolytic
• Produces flagella at room tem peratu re but not at 37 °C
• Causes - listeriosis
i. Meningitis
ii. Hepatosplenom egaly
iii. Bradycardia
• T ransmitted
i. In contam inated food
ii. T o the fetus via
■ Transplacental spread
■ Ascending infection
• In th e placenta causes
i. Miliary granuloma
ii. Focal necrosis
• Fetal m ortality rate from listeriosis is 50%
• T reatm ent
i. Amoxicillin o r gentamicin
ii. Duration 3 w eeks
8. Staphylococcus
• Is a genus o f facultative anaerobes
• Forms grape-like bunches
• Classified on ability to form coagulase
• Cause
i. Scalded skin syndrom e
ii. T o xic shock
iii. Slime in i.v. cannutae
• M eticillin-resistant Staphylococcus aureus (MRSA) is
i. Coagulase positive
ii. D N A se positive
iii. Catalase positive
9. Actinomycetes israelii
• Is
i. An anaerobe
ii. A bacillus
• Show s branching
• Is slow growing
• O ccu rs in
i. Mouth
ii. Intrauterine contraceptive devices (lU C D s)
• Causes chronic granulom atous disease
• Produces sulphur granules in tissues
• T reatm en t
i. Penicillin
ii. Requires 6—12 m onths antibiotic therapy
2. Gonorrhoea
• Infects m ucous m em branes o f
U rethra
ii. Endocervix
iii. Rectum
iv. Pharynx
V. Conjunctiva
• Can infect Bartholin’s gland
• T reatm ent
i. IM ceftriaxone 250 mg stat
ii. O ral cefixim e 400 mg
iii. IM spectinom ycin 2 g
• A te st o f cu re should be done 3 days after treatm en t
• 40% will also have concu rren t Chlamydia
• Com plications
i. G on oco ccal ophthalmia neonatorum
ii. N eonatal vaginitis, proctitis, and urethritis
iii. Disseminated g on ococcal infection
3. Gardnerelta vaginalis
• Is a facultative anaerobe
• Is Gram variable
• Is a bacillus
• Is a normal com m ensal organism o f th e vagina
• Is P-haemolytic
• Clinical features
i. Fishy smelling vaginal discharge (w orse a fte r intercourse)
ii. W h ite o r grey vaginal discharge
• T re a tm e n t = m etronidazole 400 mg b.d. fo r 7 days
5. Syphilis
• Is caused by th e spirochaete Treponema pallidum
• Classification
i. Early - includes prim ary, secondary and early la te n t stages (i.e. < 2 years o f infection)
ii. Late - includes late la te n t and te rtia ry stages (i.e. > 2 years o f infection)
• Stages
i. Prim ary - chancre r ^ p r s 10—90 days after initial exposure (persist 4 -6 weeks before
disappearing)
ii. Secondary - occurs 1 -6 m onths post prim ary infection
■ Sym m etrical non-itchy rash on tru n k and
■ C ondylom ata latum
■ Mucous patches around genitals o r m outh
iii. T e rtia ry - occurs 1-10 years a fte r initial infection
■ Characterized by th e fo rm a tio n o f gummas
* Neurosyphilis - tabes dorsalis; generalized paresis o f th e insane; A rg yll Robertson
pupil
* de Musset’s sign Q
o
M icrobiological identification
i. C annot be cu ltu re d in lab
ii. Serology is indistinguishable fro m
■ Yaw
■ Pinta
iii. D iffic u lt to differentiate betw een active and trea te d past infection o f syphilis
iv. N on-specific te st
■ Venereal Disease Research Laboratory (VDRL)
■ Rapid plasma reagin (RPR)
■ W asserm an’s reaction
■ H in to n ’s te st
v. Specific tests
■ Fluorescent trep o n e m a l antibody-absorption te st (FTA-ABS)
* Treponema pallidum particle agglutination assay (TPPA)
vi. Serology progress: IgM/FTA-ABS —» IgG —» TPPA —» VDR L
vii. Fatse positives in non-specific tests o ccu r in
■ Viral infections
■ Lymphoma
■ Tuberculosis
* Malaria
* Chagas’ disease
■ Pregnancy
Causes endarteritis obliterans
T reatm ent
i. Penicillin G
ii. D oxycycline
• The Jarisch-H erxheim er reaction is com m on post tre a tm e n t i—-
W ound in fe ctio n
1. Typically require 105 organisms to establish
2. T ype 1
® Is associated w ith surgery/diabetes
• Is due to polym icrobial infection
i. Anaerobes
ii. Facultative anaerobes
iii. O bligate anaerobes
T re a tm e n t
® Surgical d e b ridem ent
• A n tib io tic com bination
292 Chapter 9 Microbiology
PID
1. C lin ic a l m an ife sta tio n s include
• Pelvic a n d /o r abdom inal pain
• Dyspareunia
® Post-coital bleeding
• Discharge
e Cervical tenderness
« Fever
2. C o m p lic a tio n s
® Ectopic pregnancy
• Tubal in fe rtility
i. 12 % a fte r 1 st episode
ii. 20 % a fte r 2 nd episode
iii. 50% a fte r 3rd episode
• C h ron ic pelvic pain
• F itz -H u g h -C u rtis syndrom e (i.e. rig ht upper quadrant pain and perihepatitis - occurs in 15%
o f w om en w ith PID)
o
3. Causative organisms include
• Chlamydia
• Neisseria
• Mycoplasma
i. hominis
ii. ureaplasma
• Gardnerella
• Trichomonas vaginalis
• GBS
Fungi
1. C e ll w alls
• Have no peptidoglycans
• Contains ergosterol
4. C o ntain
e Fibrils
® Chitins
® Mannan
• Glucan
5. A re a e ro b ic
7. Secrete keratinase
T ru e yeast
P ro to z o a
2. Consist o f 2 types
• Protozoa
• H elm inths
3. Include
• Trichomonas vaginalis
• Toxoplasma gondii
• Giardia
• Cryptosporidium
• Plasmodium
6. Form
• T ro p h o zoite s (the p ro to z o o n p roliferative stage w ith in th e host cell)
• Schizonts
• Sporozoites (the cell fo rm th a t infects new hosts)
• M erozoites (re su lt o f m erogony th a t occurs w ith in th e h o st cell)
• Bradyzoites
• Tachyzoites
• O ocysts
• O okinetes (the fe rtilized zygotes capable o f m ovem ent)
8 . T. vaginalis
• Is a flagellate p ro to z o o n
• Transmission is venereal
• Diagnosed via
i. W e t prep
ii. Polymerase chain reaction (PCR)
iii. C u ltu re
• Symptoms include
i. Discharge
ii. Intense vulvo-vaginat itching and irrita tio n
iii. S traw berry cervix
iv. Preterm delivery
• T re a tm e n t is w ith m etronidazole o r tinidazole
9. T. gondii
• Is a z o o n o tic infection (predom inantly via felines)
• Diagnosis
. ■ ... r k l£ .. ‘ . fii - ■ ■' r - ' V . r ' , ' v"- ■ - ■
____________________ ■■ -________________________________ Protozoa 295
i. IgM /A avidity
ji. Serial samples taken 3 weeks apart
• Affects
i. Muscle
ii. N e u ra l tissue
iii. Placenta
• Transm ission in pregnancy
j. Is via transplacental in p rim ary infection
ii. G reatest risk = 26-AO weeks
iii. Low est risk = 10-24 weeks
iv. T he e arlier the infection occurs in pregnancy the m ore severe th e disease in the
new born
• M aternal risk
i. C h o rio re tin itis
ii. Encephalitis
® C ongenital infection causes
i. Stillbirth
ii. Cerebral calcifications
iii. M icrocephaly/hydrocephalus
iv. C h o ro id o re tin itis
V. Cerebral palsy
vi. Epilepsy
vii. Hepatosplenom egaly
viii. T hrom bocytopenia
« T reatm ent
i. Spiramycin
ii. Sulfadiazine/pyrim etham ine/folinic acid
• T oxoplasm a IgM persist fo r 3 years a fte r eradication
10. Malaria
• Is a m osquito-borne (female Anopheles m osquito) infectious disease
® infects red blood cells
• Caused by Plasmodium
i. falciparum
ii. vivax
iii. ovale
iv. malariae
v. knowlesi
• Severe malaria is defined as parasitaemia o f m ore than 2%
• M aternal clinical features include
i. Fever
ii. Respiratory distress and pulm onary oedem a
iii. A rthralgia
iv. Retinal damage
V. Splenomegaly
vi. Hepatom egaly
vii. Haem oglobinuria and renal failure
viii. Biochemical abnorm alities
■ Hypoglycaemia
■ Anaemia
■ T hrom bocytopaenia
[ 296 Chapter 9 Microbiology
V e c to r c o n tro l
■ Acidosis
* Hyperlactataem ia
ix. Com a
x. Convulsions
xi. M o rta lity (20% in non-pregnant w om en and 50% in pregnant w om en)
Fetal effects o f malarial infection include
i. Miscarriage
ii. Stillbirth
iii. Premature labour
iv. Low b irth w eight
v. Placental parasitaemia
Diagnosis is made via thin and th ic k blo o d film s
Management (Box 9.6)
' " j?
V iru se s
1. G e n era l facts
• Viruses have no organelles
• They depend on th e ir host fo r
i. Energy m etabolism
ii. Protein synthesis
• T h e ir genetic m aterial is in th e fo rm o f e ith e r (Box 9.7)
i. R N A
ii. D N A
• Have a viral coat = capsid
• Fetal transm ission rate generally increases w ith gestational age
• Incubation p e riod fo r m ost viruses is approxim ately 21 days
Rubella Herpes
HIV Parvovirus
Hepatitis A, C, D, E, G HPV
H epatitis B
EBV
CMV
VZV
■ M icrophthalm ia
■ Cataracts 50% risk of trans (1/3 bbys are affected by clinical
■ c h o rio re tin itis Varicella)
T here is a risk o f neonatal varicella if m aternal infection occurs w ith in 10 days o f delive
M aternal com plications include
i. Pneum onitis (10%)
ii. Encephalitis
iii. Hepatitis
T re a tm e n t
i. If m aternal infection occurs — aciclovir ____ J
ii. If exposed to varicella - prevention o f disease w ith VZIgG administration
iii. VZIgG is n o t beneficial in a patient w ith chicken p o x
Q
6. Rubella
• Is also know n as G erm an measles
• Is a togavirus
• Has a single-stranded R N A genom e enclosed in a capsid
• Spreads via droplets
• C ongenital defects (congenital rubella syndrom e) if acquired during pregnancy include
i. Eye manifestations
■ C ataract
■ Glaucoma
ii. H e a rt defects
■ PDA o
■ VSD
■ Pulm onary stenosis
iii. Sensorineural hearing toss
iv. Haem atological manifestations
■ T hro m b o cyto p e n ic purpura
* H aem olytic anaemia
■ Lym phadenopathy
• Feto-m atem al transm ission rate
i. 1st trim e s te r = 90%
ii. 2nd trim e s te r = 30%
iii. Risk o f transm ission is decreased a fte r 16 weeks
• Causes defects in
i. 1st trim e s te r = 90% o f infected fetuses
ii. 2 nd trim e s te r = 20% o f infected fetuses
iii. >16 weeks = m inim al risk o f deafness only
o
iv. >20 weeks = no increased risk
V
Is a lentivirus (a member of the retrovirus family)
Primarily infects
j. Th cells (particularly C D 4)
ii. Macrophage
iii. Dendritic cells
Transmission
i. Sexual — risk o f transm ission p e r act (in high risk countries) is
a Female to male = 0.04%
■ Male to male = 0.08%
■ Receptive anal intercourse = 1.7%
ii. (Latex condom s reduce this risk by 85%)
iii. Blood products, i.e.
» Intravenous drug users
® Blood transfusion
iv. Perinatal transmission
v. (H IV have been found in lo w concentration in saliva, tears, and urine — p otential fo r
transmission fro m these is negligible)
Structure
i. Spherical (120 nm diam eter)
ii. C om posed o f 2 copies o f single-stranded R N A enclosed by a capsid
iii. Capsid is
18 Com posed o f viral p ro te in p24
H Surrounded by a m atrix com posed o f viral p ro te in p17
iv. Viral envelope
H Surrounds th e m atrix
B Com posed o f phospholipids and g lyco p ro te in (i.e. gp120 and gp41)
v. G lyco p ro te in enables th e virus to attach to and fuse w ith ta rg e t cells
Prevalence in th e UK antenatal population
i. Average is 0.17% (highest in London - 0.32%, and lo w e st in th e N o rth East and South
W e s t - 0.08%)
ii. A p p ro xim a te ly 1/3 o f infections are due to HIV1 and 2/3 due to HIV2
Fetal transm ission rate
i. W ith o u t tre a tm e n t = 1 5 % (in European o r N o rth Am erican countries)
ii. W ith tre a tm e n t < 1 %
Factors th a t increase vertical transm ission rates
i- High m aternal viral load
ii. Low C D 4 co u n t
iii. Prolonged ru p tu re o f membranes
iv. C horioam nionitis
v. C o -m o rb id ity e.g. malaria, hepatitis C virus (H C V )
vi. Breastfeeding
vii. Preterm birth
Neonatal serology is o f lim ited value as passively acquired m aternal antibodies persist until
18 m onths o f age
AIDS occurs w hen C D 4 co u n t is b e lo w 200/m m 3 blood
| 300 Chapter 9 Microbiology______________________ - ■. ____________- t
• Increases risk o f
i. Miscarriage
ii. Pre-term delivery
iii. Intrauterine FGR
• Com plications include
i. Kaposi’s sarcoma
ii. Pneumocystis carinii pneum onia
iii. N o n -H od g kin ’s lymphoma
iv. AIDS -related dem entia
9. H um an p a p illo m a viru s (H P V )
• Consists o f 5 groups
i. a-papiUomavirus
ii. P-papillomavirus
iii. y-papillom avim s
iv. Nu-papillom avirus
v. M u-papillomavirus
• a-papillom aviruses consist o f 2 subtypes
i. Lo w risk - 6 and 11 (induce non-m alignant changes)
ii. High risk - 16, 18, 31, 33 and 45 (induce m alignant changes)
• O n ly infects epithelial cells
• Structure
i. Is made up o f 75 capsomeres
ii. Each capsomere consist o f 5 m olecules o f L1 co -p ro te in
iii. Contains circular D N A
• G enom e is composed o f
i. Early proteins (E1, E2, E3, E4, E6, E7)
ii. Late proteins (L1 and L2)
• E6 and E7 are HPV proteins associated w ith cancer
• Causes inactivation o f
i. p53
ii. pRB
• Incubation period is 2 -8 m onths
• Regresses spontaneously via cell-m ediated im m u n ity (70% regress w ith in 1 year; 90% regress
w ith in 2 years)
• T reatm ent
i. P odophyllotoxin
ii. Im iquim od
iii. C ryotherapy
Stage o f in fe c tio n HBsAg HBeAg IgM anti IgG anti Hep B Anti- Anti-
(surface (e Ag) core Ab core Ab virus HBe Ab HBs Ab
Ag) DNA
Acute (early) + + + + + - -
Acute (resolving) + - + + - + /- -
Chronic (high + + /- - + + + /- —
infectivity)
Chronic (low + - - + - + /- —
infectivity)
Immune (90%) - - - + - + /- + /-
Post vaccination - - - - - - +
11. H T LV
• Prevalence in U K = 0.25%
• Feto-maternal transm ission is via breast m ilk
• Manifestations o f congenital infection o ccu r a fte r 10-30 years
i. T-cell leukaemia
ii. Tropical spastic paraparesis