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Informatics NOTES Prelim
Informatics NOTES Prelim
Information Science
- A field that is primarily concerned with analysis, collection, classification, manipulation,
storage, retrieval, movement, dissemination, and protection of information.
Information Technology
- It includes the development, design, implementation, and management of computer-based
information systems and focuses on the practical application of technology to support
information processing and management.
Computer Science
- the study of computers and how they process information using algorithms, hardware, and
software.
- applies the principles of mathematics, engineering, and logic to a plethora of functions,
including algorithm formulation, software and hardware development, and artificial
intelligence.
Computer Technology
- A broad term referring to computer-specific technology; Any inventions related to or
associated with the use of computers and devices with a central processing unit, such as the
hardware and software of a computer, the internet and storage devices
Biomedicine
- branch of medicine concerned with the application of the principles of biology and
biochemistry to medical research or practice
Digital Biomedicine (Digital Medicine) refers to the field concerned with the use of
technologies as tools for measurement, and intervention in the service of human health.
Telemedicine refers the use of technology to provide health care remotely, such as through
phone, video, or internet
BIOMEDICAL INFORMATICS
- Uses computers and information technologies to assist physicians in the diagnosis and
treatment of patients
- is loosely categorized into four levels of study:
A. Bioinformatics (molecular level)
В. Imaging Informatics (cellular, tissue, and organ system level)
C. Clinical Informatics (individual healthcare system)
D. Public Health Informatics (population level)
Imaging Informatics
- Also refereed to as "Radiology Informatics" or "Medical Imaging Informatics"
- is the collective name given to the field of work and combination of technologies that
provide the features of a paper-less or paper-lite department.
- concerned as a speciality with the electronic acquisition, storage, and distribution of the
tent and image data produced and utilized within a diagnostics department (Radiology
Pathology, Cardiology, etc.) for the wider provision of care and benefit to patients
- Within radiology, for almost a century film was the primary method of handling imaging -
with transferring and filing being a manual clerical process.
- Early 2000s onwards, the move away from film-producing departments towards the
integration of more modern electronic methods began to take place
PACS - Picture Archiving and Communication System
RIS - Radiology Information System
OCS - Order Communication System
EPR - Electronic Patient Record
I. Computer
Has two (2) principal parts:
1. Hardware - is everything about the computer that is visible; the physical components of
the system. that include the various input, output, and processing devices
categorized according to which operation it performs (input
processing, memory, storage, output, and communications)
2. Software - consists of computer programs that tell the hardware what to do and how to
store and manipulate data (Application Softwares, Operating System and Middleware
Software)
Input devices:
- any hardware device that sends data to a computer, allowing you to interact with and control
it.
* Keyboards
* Mice
* Microphones
* barcode readers
* touch screens
* image scanners
Output devices:
- any piece of computer hardware equipment which converts information into human readable
form. It can be text, graphics, tactile, audio, and video.
1. Monitors
2. Printers
3. speakers.
Processing devices:
- used to process data using program instructions
* Motherboard
* Microprocessor
* BIOS
* Bus
* Memory
* Ports
* CMOS
"HARDWARE COMPONENTS"
Figure 2-1 A basic personal computer consisting of a CPU, keyboard, mouse, and LCD
monitor.
2. "The Motherboard" - largest circuitry board inside the computer, and it contains many
important small components to make the computer function properly
III. "The Bus is a series of connections, controllers, and chips that creates the information
highway of the computer
- Provides the connections for the information to flow within the computer
IV. "The Memory" - used to store information currently being processed in the CPU
- Also known as the "RAM (Random Access Memory"
- a short-term storage for open programs
V. "The Port - collection of connectors sticking out of the back of the PC that link adapter
cards, drives, printers, scanners, keyboards, mice, and other peripherals that may be used.
TYPES OF PORTS
1. Parallel
- a 25-pin connector found on the back of most modern PCs
- can send 8-bits of data through the connection
2. Serial - can be used universally for many components plugged into the computer, such as
a mouse
- mostly of this type of port is a 9-pin variety, but some can have up to 25-pin connectors
- can only send 1 bit of data down on a single wire
3. USB
- common interface connection; can connect up to 127 devices to one single USB port
- Offers many possible connection
4. Integrated Drive Electronics (IDE) - can be found on the motherboard and connects the
hard drive, floppy drive, and CD-ROM drive to the board
5. Small Computer System Interface (SCSI) - the fastest and most versatile way for a PC to
communicate with its peripherals.
- can mange up to seven (7) devices through a daisy chain connection
vi. "Complementary Metal Oxide Semiconductor (CMOS)" - a special type of memory chip
that uses a small rechargeable or lithium battery to retain information about the PC's
hardware while the computer is turned off.
- Also, the location of the system clock that keeps track of the date and time
6. "Hard Drive"
- the main repository for programs and documents on a PC.
7. "CD/DVD Drive"
- found on the front of the encasement of a computer.
- reads and writes all common CD and DVD formats
"PERIPHERALS"
- refers to the devices that connects to a computer and enhance its functionality
Examples:
1. Keyboard
- It is used to input text, characters, and other commands into a computer
2. Mouse
- It allow the user to move the computer's cursor to activate and perform functions within the
computer's software.
* has three common types:
1. Mechanical - This mouse uses a hard rubber ball inside an opening on the
bottom that is surrounded by sensing devices.
2. Optical - This mouse has a high-intensity diode that bounces light off surfaces
and back to a receiver inside the mouse.
3. Optomechanical: This mouse is a hybrid of mechanical and optical mouse. It
uses a rubber ball that interacts with rollers that trigger the optical sensors within the mouse.
Light is reflected back to the sensors based on the movement of the rollers.
3. Scanners
- devices that capture drawings or written paper documents and convert them into a digital
image or document that can be edited.
* Radiology Department - it is used to convert analog (film) into a digital image
* Purpose: To provide a way to compare a hardcopy image with a digital image on a PAC
system (PACS)
4. Speakers
- receive sound data from a sound card that is either built into the motherboard or is an
expansion card.
* It gives audible signals from the software to alert us to various task by converting electrical
signal to a series of vibrations in the speaker.
5. Microphones
- are used to record voice or to use voice dictation software.
MONITOR
- One of the most important elements in a PACS display station
- A computer hardware that displays the images, videos, and/or any graphics information
3 types of monitors:
* CRT (Cathode Ray Tube)
* LCD (Liquid Crystal Display) Widely used
* Plasma Screen - Heavily used in government and military applications in late 1960s
CRT MONITORS - CATHODE RAY TUBE MONITORS
- The most popular monitors on the market; consists of a cathode and anode within a
vacuum tube.
- Works with the cathode boiling off a cloud of electrons which are sent to the monitors
anode. Then, the electrons interact with either green, blue, or red dot to form the color that is
sent to the video card signal.
MATRIX
- Arrangement of pixels in a rectangular or square table of numbers that represents the pixel
intensity to be displayed on the monitor
Pixel
- Basic picture element on a display
- A small square in the image that has set values
Dot Triad
- A grouping of one red dot, one green dot, and one blue dot
Dot Pitch
- The measurement on how close the dots are located to one another within a pixel
- The smaller the dot pitch of a display, the finer the resolution
- expressed as Aperture Grille Pitch, Shadow Mask or Slot Pitch, depending on the monitor
maker
Resolution
Refers to the number of pixels on a display.
- The more pixels in an image, the higher the resolution of an image and the more
information can be displayed.
- Also defined as the process or capability of distinguishing between individual parts
of an image that are adjacent
SPATIAL RESOLUTION
- Another term for "Detail Resolution"
- Is the system's ability to resolve, as separate forms, small objects that are very close
together
- expressed in line pairs per millimeter (lp/mm)
Spatial frequency - the number of line pairs in a given length
CONTRAST RESOLUTION
- The ability of the system to differentiate structures that has a varying density from its
surrounding
- Also referred to as the sensitivity of the system
High Subject Contrast - structures that are easy to distinguish (e.g bone-soft tissue
interface)
Low Subject Contrast - structures that has almost the same appearance (e.g Liver
spleen)
TEMPORAL RESOLUTION
- Refers to the speed that the data can be acquired
- particularly important to reduce or eliminate artifacts that result from object motion, such as
those commonly seen when imaging the heart
LINEAR ATTENUATION COEFFICIENT - characterizes the absorption of x-rays in tissue.
• X-RAY: is a function of x-ray energy and the atomic number of the tissue
• For CT: absorption of x-rays by the patient is determined also by the mass density
of the body part
REFRESH RATE
- Measure of how fast the monitor rewrites the screen or the number of times that the
image is redrawn on the display each second.
ASPECT RATIO
- the ratio of the with of the monitor to the height of the monitor
VIEWABLE AREA
- measured diagonally from one corner of the display to the opposite corner
History of Computers
Digital Image
- Is an image that has been discretized (digitized) both in space (physical location) and in
ampliude (gray level).
Image Matrix
- An array of numbers in rows and columns
DICOM
-Digital Imaging and Communications in Medicine
- the internationally accepted standard used for storing, exchanging, and transmitting
medical image data
- allows imaging modalities and PACS to communicate in the same "language."
- Developed by the American College of Radiology (ACR) and the National Electrical
Manufactures Association (NEMA)
FILM DIGITIZERS
- Scans the analog film and produces numeric signals for each part of the scanned film.
PRINTERS
- Also called as "Imagers"
- receive an image from a workstation and print the image based on the printer LUls and
preset print layouts.
- Three main types of printers are found in a typical imaging department:
1. Plain Paper
2. Thermal
3. Film
Common uses:
* Backup
* Difficult PACS locations
* Outside Physician
* Legal Cases
* Teaching purposes
NETWORK
- provide the physical interconnections and backbone between pieces of IT
- two or more objects sharing resources and information
SERVERS
- devices that run centralized applications, such as the backend functionality of a PACS or
RIS, and in most cases are housed within a dedicated environment managed by the local IT
department, known as the server room.
- a system that controls access to the hardware, software, and other resources on a network
and provides a centralized storage area for programs, data, and information
Thin-Client
- is a device that is found on a network that requests services and resources from a server.
The thin-client may be another computer, a printer, or any other networkable device that
needs a server to complete its tasks. Almost any personal computer (PC) can be a client, as
long as it can be attached to the network.
Thick-Client
- is a computer that can work independently of the network and process and manage its own
files.
- networked so that it can share resources such as printing and take advantage of the
additional security available on networks through dedicated servers
1. Peer-to-peer network
- each computer on the network is considered equal; no computer has utimate control over
another
2. Server/Client-based Network
- (Server-based) there is a centralized computer (the server) that controls the operations,
files, and sometimes the programs of the computers (the clients) attached to the network.
- (Client-based) similar to server-based network, however, rather than sending the entire
original resource to the client for processing, the server processes the resource as requested
by the client and returns only the results back to the client
Communication Medium
- connects pieces of equipment for the transfer of files and resources
Network Topology
- the physical (geometric) layout of the connected devices
- Three common PACS architecture that manages the flow of images after acquisition
1. Client/Server Based Systems - images are sent directly to the archive server after
acquisition and are centrally located
Advantages:
- Any examination sent to the PACS is available anywhere without other interventions.
- Only one person can open the study with the intent to read it. Others that open the study
will receive a message that the study is open and being read.
- There is no need to pull or send historic images to a particular workstation because the old
studies are available with the new on the archive.
Disadvantages:
- The archive server is seen as a single point of failure. If the archive goes down, the entire
system is down, and no image. movement can take place. All newly acquired images must
remain at the modality until the archive is up and can again receive the images.
- The system is very network dependent. The images are flying back and forth belween the
archive and the workstations, and the network can become bogged down because of the
large volume of data being move.
- The archive server is handling many requests at once and can become bottlenecked
because of the high volume of requests.
2. Distributed Systems (Stand-alone Systems) - the acquisition modalities send the images
to a designated reading station and possibly to review stations, depending on where the order
originated
Advantages:
- If the archive server goes down, local reading at the workstations is not interrupted, other
than not being able to get historic images. Her the archive comes back up, the images that
have been changed and signedoff by the radiologist will be forwarded automaticaly bo the
arcive to besaved.
- Because the images can be distributed to many locations at once, copies of an
examination exist at various locations. Therefore it is less likely that PACS data will be lost.
- The system is less dependent on the network for its speed. The user can be working on
one examination while the workstation is puling and getting the next examination ready to be
read. The workstation can fetch historic images according to rules the user sets up.
Disadvantages:
- There is heavy reliance on the assumption that the distribution of images is being done
correctly. If the distribution is wrong, the preleching of historic examinations will not be correct
either.
- Each workstation has a different worklist, and therefore only one person can be working on
that list at a time.
- It can be inconvenient to read aditional studies; the radiologist would havetomove to
another workstation to read the images designated for thatworkstation
- The users must depend on the query-and-retrieve function when nonscheduled
examinations arrive at the workstation to be read.
- It is also possible for two radiologists to be reading the same examination and not know
that the other has it until they try to start dictation. The paper requisition is very important with
this type of PACS.
3. Web-based Systems - is very similar to a client/server system in how data flow. The
significant difference is that both the images and the application software for the client display
are held centrally
Advantages:
- The hardware at the dient can be anything that will support an appropriate web browser.
This allows for greater flexibility with hardware but can also be a disadvantage because
image displays (monitors) may not be able to support diagnostic quality.
- The same application can be used on site and at home in teleradiology situations.
Disadvantages:
- The system's functionality may be limited because the software is not installed locally. The
bandwidth of the network connection limits the amount of data that can be transmitted for
download, and some programs are too large to be transmitted over the network that is
installed.
- As with client/server systems, the network is the biggest obstacle to performance
A typical HIS with two categories of software packages: business and administration, and
clinical operation. Rectangles are major components in each category
Patient-Related Information:
- Medical, Administrative, Patient Demographics, and Biling Information
Examination-Related Information:
- Procedural descriptions and scheduling, diagnostic reporting, patient
arrival documentation, film location, film movement, and examination room
scheduling.
Benefits:
- Improved Quality of Healthcare
- Improve Efficiency
- Reduction in Errors
WORKFLOW
- Is a term that simply means how a process is done, step by step.
- In radiology, we have always used the term workflow to describe how we complete an
examination from order entry to transcribed report.
Film-based workflow
Order-entry - patients information and request for examination
Exam performed - passed to the radiographer to take examination
Film processed
Film interpreted - passed to the radiologist for interpretation of image
Transcribed report - radiologist passed the interpreted report to be transcribed
PACS-based workflow
Order-entry
Exam performed
Image processed
Image interpreted - passed to the radiologist with the use of PACS system
Transcribed report
INFRASTRUCTURE OPTIONS/DECISION
- One supplier providing the majority of the components (from MPI to RIS) individually (or as a
single system) would result in seamless communications, simply because the data will be
stored on fewer databases (perhaps even
just one)
Point-to-Point Model
- multiple systems have direct connections to each other and thus have no single point of
failure, which could also occur with the
single system (the individual components, Such as RIS/PACS or LIMS, can continue to
operate if other sections of the system are
unavailable)
Hub-and-Spoke Model
— links the various systems, reducing the need to maintain each connection as for the point-
to-point model
- main point of failure becoming the actual integration engine
KEY BUILDING BLOCKS OF INTEROPERABILITY
Patient ID
—Patient identifier (single) to avoid confusion due to muliple identifiers
Best Practice
—Benefit of achieving interoperability is present such as flow of meaningful data for clinical
and administrative process), the ability to redesign process, monitor quality including patient
safety), and being able to retrieve data from frozen legacy systems
HISTORICALDEVELOPMENTOFMEDICALIMAGING
COMPUTED TOMOGRAPHY
CT brought about the coupling of the computer and imaging devices.
The earliest CT unit built by Hounsfield took several hours to acquire a single slice of
information. The machine then took a few days to reconstruct the raw data into a
recognizable image.
The first commercial CT scanners built were made to image the head only.
Fluoroscopy
Saw many advances during the 1970s as well thanks to the advances in computer
technology Analog-to-digital converters made it possible to see the dynamic (real- time)
image on a television monitor in higher resolution and to store the frames digitally on a
computer.
ELECTRONIC PROGRAMS
In earlier times, the RT was primarily responsible for the chemical processing of film and
positioning the film (hanging) for the radiologist to interpret.
The radiologist is ultimately responsible for the interpretation of medical images, but each
of the other members of the team, has specific responsibilities.
RIS deals with schedules, protocol descriptors, diagnostic conclusions, and billing. PACS
deals strictly with image manipulation and document storage.
- is a networked group of computers, servers, and archives that can be used to manage
digital images
- serves as the file room, reading room, duplicator, and courier.
- can provide image access to multiple users at the same time, on-demand images, electronic
annotation of images, and specialty image processing
4 COMPONENTS OF PACS
NETWORK
- To be truly effective, each of these image-processing modes must be quick and easy to use.
This requires that each workstation must be microprocessor controlled and must interact with
each imaging system and with the central computer. To provide for such interaction, a
NETWORK is required.
Computer scientists use the term network to describe the manner in which many computers
can be connected to interact with one another.
TELERADIOLOGY
- the process of remote transmission and viewing of medical image
the American College of Radiology (ACR), in cooperation with the National Electrical
Manufacturers Association (NEMA), has produced a standard imaging and interface
format called Digital Imaging and Communications in Medicine (DICOM).
- the internationally accepted standard used for storing, exchanging, and transmitting medical
image data
- allows imaging modalities and PACS to communicate in the same "language.
Instead of running films up to surgery for viewing on a viewbox, one simply transfers the
image electronically to the PACS workstation in surgery
From the RIS workstation, any number of coded diagnostic reports can be initiated and
transferred to a secretarial workstation for report generation.
The moment a patient reports to any reception desk anywhere in the facility, the process
of recovering archived records commences automatically.
A secretarial workstation at the departmental reception desk can interact with a
departmental computer for scheduling of patients, technologists, and radiologists and for
analysis of departmental statistics.
Finally,at the completion of an examination, PACS allows for more efficient image
archiving.Many applications now exist for electronic notepads and mobile phones that
allow these devices to serve as viewing stations.
STORAGE SYSTEM
Just the cost of the hospital space to accommodate a film file room is sufficient to justify
PACS.
Image storage requirements are determined by the number of images and the image
data file size. Image file size is the product of the matrix size and the grayscale bit depth.
When the patient checks into the hospital or other health care facility, a document is
prepared in order to properly identify the patient.
Incorporated with a similar docu-ment, the Hospital Information System (HIS), which is
integrated with other hospital sections for information transfer and storage.
RIS is specific within radiology and requires PACS. HIS is the principal component of the
EMR
A new patient upon arrival will be registered in the EMR, which may, if appropriate, lodge
a request for a medical image. Such a request is relayed to the RIS, where a specific
protocol, the Protocol Worklist, is opened and the request filed with a specific Imaging
Modality Worklist.
Informatics Communication
The requirement for efficient communication among various computers and physical
sites is managed by the DICOM standard and the Health Level Seven (HL7) standard.
Integrating the Healthcare Enterprise (IHE) is a project that manages these connections,