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Mapping QTL For Cold Tolerance Trait in A Gift Derived Tilapia Line by Ddrad Seq Chun Hui Ai Full Chapter
Mapping QTL For Cold Tolerance Trait in A Gift Derived Tilapia Line by Ddrad Seq Chun Hui Ai Full Chapter
Mapping QTL For Cold Tolerance Trait in A Gift Derived Tilapia Line by Ddrad Seq Chun Hui Ai Full Chapter
Aquaculture
journal homepage: www.elsevier.com/locate/aquaculture
A R T I C L E I N F O A B S T R A C T
Keywords: Tilapia is an economically important fish in the world. High mortality caused by low temperature is a serious
ddRAD-seq problem to tilapia farming during overwintering. In this study, a genome-wide significant QTL interval, located
Cold tolerance on chrLG18, controlling cold-tolerance trait was identified in a full-sib family of GIFT originated tilapia line using
QTL
ddRAD-seq-based QTL mapping. The QTL explained 21.5% of phenotypic variances. Six pairs of microsatellite
Microsatellite marker
markers were successfully developed within this interval. For the microsatellite marker SSR613719, which had
two genotypes in the population, ‘lm’ and ‘ll’, the number of individuals with the ‘ll’ genotype was significantly
higher than the number of individuals with the ‘lm’ genotype in the cold sensitive population (p < 0.05). This
independent test indicated the reliability of the detected QTLs. The expression of candidate genes (pak1ip1,
loc100696456 and loc100697261) in the QTL interval was significantly affected under cold treatment as indi
cated by qRT-PCR test. This study provides important information for marker-assisted selection of cold tolerant
tilapia lines.
* Corresponding author at: College of Life Sciences, State Key Laboratory of Biocontrol, Institute of Aquatic Economic Animals and Guangdong Provincial Key
Laboratory for Aquatic Economic Animals, Sun Yat-Sen University, Guangzhou 510275, PR China
E-mail address: xiajunh3@mail.sysu.edu.cn (J.H. Xia).
1
These authors contributed equally to this work.
https://doi.org/10.1016/j.aquaculture.2022.738273
Received 24 February 2022; Received in revised form 10 April 2022; Accepted 16 April 2022
Available online 22 April 2022
0044-8486/© 2022 Elsevier B.V. All rights reserved.
C.H. Ai et al. Aquaculture 556 (2022) 738273
decrease (Shi et al., 2015). Cold stress may lead to dysregulation of free 2.3. Cold stress treatment and collection of trait data for QTL mapping
radical and lipid metabolism, reduce superoxide dismutase activity,
macrophage rupture and phagocytic activity, and increase malondial The cold stress experiment was conducted in an indoor circulating
dehyde content in tilapia head-kidney, which adversely affect their water culture system at the College of Life Sciences, Sun Yat-sen Uni
physiological adaptation and eventually lead to death (Qiang et al., versity. The starting temperature of the aquatic water was 26 ◦ C. The
2018). cooling process was carried out at a rate of 1 ◦ C/h using a chiller until
Marker-assisted selection (MAS) allows selection at an early stage the temperature reached to 15 ◦ C. The cooling rate was then slowed
and overcomes the difficulty in identifying traits that are not obvious, down at a rate of 0.5 ◦ C/h, until the water temperature was close to
thus significantly improving the accuracy of selection and shortening around 8.5 ◦ C. The temperature was then kept stable by using water
the breeding cycle (Lande and Thompson, 1990). Using a set of markers chiller. Unconsciousness is an unresponsive state. Tilapia may appear
that are closely linked to traits, MAS can be more effectively applied to unconsciousness under cold challenge depending on its cold tolerance.
the selection of cold tolerant lines in tilapia. Mapping quantitative trait However, an unconscious animal is not necessarily a dead one. The
loci (QTL) and finding the linked markers for cold-tolerant traits are the response status of the test fish was continually observed. Once a fish
key steps in the improvement of the cold stress tolerance in tilapia. A lot showed unconsciousness, the time point (Tn) for each fish (the nth fish)
of QTL intervals associated with, e.g., growth (Liu et al., 2014), disease was recorded immediately. The first unconscious fish was observed after
resistance (Barría et al., 2021), sex (Zhu et al., 2022), salt tolerance (Gu half hours of challenge at around 8.5 ◦ C. The survival time (min) was
et al., 2018), hypoxia tolerance (Li et al., 2017), ammonia nitrogen then calculated using a formula: Tn-T1 and was treated as trait value for
tolerance (Zhu et al., 2021) and body color (Li et al., 2019) have been cold tolerance analysis in this study. The fin sample for each unconscious
identified in tilapia. QTL mapping for cold tolerance in two unrelated F2 fish were cut and stored in absolute Ethanol for subsequent DNA
families of interspecific tilapia hybrids (Oreochromis mossambi extraction.
cus×Oreochromis aureus) conducted using tens of microsatellites sug
gests a QTL, near UNH879 for cold tolerance (Cnaani et al., 2003). A 2.4. Cold stress and sample collection for expression analysis
genome scan of a cross between a (Oreochromis niloticus×Sarotherodon
galilaeus) male and a (O. mossambicus×O. aureus) female supports the The offspring of the full-sib family that cultured in a tank for 7 days
existence of a QTL for cold tolerance on ChrLG23 using microsatellite were randomly divided into experimental and control groups. The water
and AFLP marker data (Moen et al., 2004). Due to low density of markers temperature in the experimental group was decreased to 15 ◦ C with a
(e.g., 10 markers on LG23) mapped in populations, QTL for cold toler water chiller and the temperature in the control group was maintained
ance is broadly spanned the region of the chromosome. Moreover, QTL at 26 ◦ C. Gill, heart, liver, intestine, muscle and brain tissues from both
for cold tolerance in Nile tilapia-originated lines is unclear, which may groups were collected at 12 h post treatment for RNA extraction.
hinder the selection of cold tolerant lines using MAS techniques.
Double-digest restriction-site associated DNA sequencing (ddRAD- 2.5. DNA extraction, ddRAD-seq and SNP genotyping
seq) is an inexpensive method for de novo SNP discovery, genotyping
and QTL mapping of important traits (Peterson et al., 2012). This Genomic DNA was extracted from fin tissue using AMPureXP beads
technique is already being applied in QTL mapping of many species (Ba (Beckman Coulter, Fullerton, CA, USA) according to the manufacturer’s
et al., 2017; Laila et al., 2019; Nyinondi et al., 2020; Tan et al., 2019). protocol, and the RNA was removed by RNase A, then the quality of
In southern China, cold snap during over-wintering causes huge genomic DNA was evaluated with 0.8% agarose gel electrophoresis and
economic losses (Wang et al., 2021), and the cold temperatures had a quantified with Qubit Fluorometer (ver3.0; Invitrogen).
negative impact on tilapia production (Ma et al., 2015; Shi et al., 2015). The ddRAD-seq genotyping technique was used to genotype 96 in
QTL mapping for cold tolerant trait and then carrying out selection of dividuals including the first 48 samples showing the most sensitive to
cold tolerant tilapia lines using MAS is plausible solutions to these cold stress and the last 48 samples showing the most tolerant during cold
problems. In this study, we conducted QTL mapping to identify QTL stress treatment in the family. Two hundred nanograms of genomic DNA
intervals for cold tolerant trait in a full-sib family (N = ~ 600) generated was taken from each individual. The ddRAD-seq library was constructed
using a pair of genetically improved farmed tilapia (GIFT)-derived ti using a technique as described in the protocol (Peterson et al., 2012).
lapias using ddRAD-seq. The expression of candidate genes under low The library and genomic DNA from two parents was submitted to the
temperature stress was explored. Our finding provides a basis for con company Novogene (Beijing, China) for Illumina HiSeq PE150
ducting molecular marker-assisted selection and functional analysis of sequencing.
cold tolerance in tilapia. The clean data for 96 offspring and 2 parents were mapped to the
Nile tilapia reference genome (oreNil2.fa) with the program bowtie
2. Methods and Materials (version 2.0)(Langmead and Salzberg, 2012). SNP calling was carried
out using the mpileup pipeline that implemented in the program sam
2.1. Ethics statement tools and bcftools (with the parameter setting as Dugf). The output data
was first filtered with a total minimum depth of 200 and a minimum
All experiments in this project were approved by the Animal Care quality of 10. Then, for offspring, SNPs with the read depth < 10, ge
and Use Committee of the School of Life Sciences, Sun Yat-sen notype quality <10 and missing data rate > 2% were removed. For the
University. parent data, SNPs with the read depth > 20 and read quality >10 were
remained. The resulted SNP datasets were merged with their parent SNP
2.2. Family construction and management of experimental fish data to remove the furious genotyping data.
In this study, a full-sib family (N = ~ 600) was generated from a pair 2.6. QTL analysis
of GIFT tilapias in Wulonggang Aquaculture company, Ltd. (Guangzhou,
Guangdong, China). The family was raised in the pond at the hatchery of QTL analysis was performed using the software MapQTL 6.0 (Van
the company, and then was transferred to a circulating freshwater cul Ooijen, 2009), based on the SNPs obtained from ddRAD-seq and the
ture system at the college of Life Sciences, Sun Yat-sen University at 60 values of cold tolerance traits in tilapia. The genotyping data with phase
days post-hatch (dph). data were exported from JoinMap software (Van Ooijen, 2006). Per
mutation test with 50,000 times was conducted to determine the
genome-wide and chromosome significant logarithm of odds (LOD)
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C.H. Ai et al. Aquaculture 556 (2022) 738273
thresholds according to the interval at the relative cumulative value of The first 48 individuals showing the most sensitiveness to cold stress
0.95. Interval mapping analysis was first performed to identify cofactors have a mean survival time of 40.34 min (SD = 24.03 min) and the last 48
within QTL regions using the automated cofactor selection analysis and individuals showing the most tolerance to cold stress have a mean sur
followed by composite interval mapping to finally identify QTL above vival time of 215.75 min (SD = 7.00 min) (Fig. 1a).
the genome-wide threshold levels. The 192 individuals including 96 extremely cold tolerant individuals
and 96 extremely cold sensitive individuals were applied for QTL vali
2.7. Validation of the QTL using microsatellite markers dation using microsatellite markers. The survival time data for the 96
extremely cold sensitive individuals was 81.54 min (SD = 47.57 min)
To confirm the genome-wide QTLs, six novel microsatellite markers and the survival time data for the 96 extremely cold tolerant individuals
were successfully developed in the QTL region of chrLG18 using the was 203.75 min (SD = 13.86 min) (Fig. 1b).
online tandem repeat finder (http://tandem.bu.edu/trf/trf.html) and
the program Primer-BLAST (www.ncbi.nlm.nih.gov/tools/primer-bl 3.2. SNP genotyping for the mapping family by ddRAD-seq
ast/). PCR amplifications were performed in a 20 μL volume using a
2× PCR Master Mix and 40 ng genomic DNA and 0.5 μM forward and The 96 individuals for QTL mapping were genotyped using ddRAD-
reverse primers (Dongsheng, China). The reactions were conducted in a seq technique. The two parents were genotyped using whole genome
Bio-Rad cycler (Bio-Rad) using the following program: one cycle of 3 resequencing technique. The samtools pipelines identified 81,279 vari
min at 94 ◦ C and 35 cycles of 30 s at 94 ◦ C, 30 s at 60 ◦ C, and 20 s at ants. A total of 2,151,523 SNPs were identified between the parents. We
72 ◦ C, followed by a final extension of 10 min at 72 ◦ C. PCR products further filtered the variants and finally got 1160 high quality SNP data
were resolved by running electrophoresis of 6% polyacrylamide gels and for the mapping family (Supplementary Table 1).
silver staining. The genotyping for each microsatellite was manually QTL analysis was performed using SNP data in combination with
called. All microsatellite markers were genotyped for the 96 individuals survival time data for the mapping family. One significant QTLs at
from two extreme trait groups of the QTL mapping family. genome wide level were detected on chrLG18 (p = 0.05, Fig. 2). The SNP
marker chrLG18_19,316,719 showed the most significant association
2.8. RNA isolation and qRT-PCR analysis for candidate genes with cold-tolerant trait (p < 0.05) with the explained percentage of
variance of 21.5% and an LOD value of 5.6 (the genome wide signifi
Total RNA was isolated using TRIzol reagent (Invitrogen, UK) ac cance threshold = 4.5). In addition, the SNP marker chrLG8-
cording to the manufacturer’s protocol. The candidate genes near and on 24_16,262,132 on chrLG8 showed a LOD value of 3.9 and the
the QTL peak region (chrLG18: 18.93 Mb ~ 20.42 Mb) were explored. explained percentage of variance of 14.5% (the chromosome wide sig
Ef1α gene was used as an internal reference gene. qRT-PCR was per nificance threshold = 3.1). The SNP chrLG4_4,189,125 on chrLG4 has
formed on the Roche Light Cycler 480 Real-time PCR System. Each the explained percentage of variance of 9.9% with an LOD value of 3.2.
sample was performed with three replicates. Complementary DNA Information of peak SNP markers significantly associated with cold-
(cDNA) products were diluted 1:10 before used as qPCR templates. The tolerance trait is summarized in Table 1.
total volume of the reaction system was 10 μL, containing 5 μL 2× SYBR
Green mix, 0.2 μL forward primer, 0.2 μL reverse primer, and 4.6 μL of 3.3. Validation and fine mapping of the QTL on chrLG18
diluted cDNA. The qPCR program includes 3 min of 95 ◦ C pre-
incubation, followed by 40 cycles of amplification at 95 ◦ C for 15 s, To verify the reliability of the QTL that identified by ddRAD-seq, six
60 ◦ C for 15 s, and 72 ◦ C for 20 s. The melting curve procedures include novel microsatellite markers with polymorphisms between parents were
95 ◦ C for 15 s, 65 ◦ C for 15 s, and slowly increase to 95 ◦ C. The result was successfully developed between 11 Mb and 20 Mb of chrLG18 (Sup
analyzed according to the ΔΔCt method. The expression differences of plementary Table 2).
candidate genes between groups were investigated using Student’s t- Genotyping of the 96 individuals in the cold tolerant group and the
test. 96 individuals in the cold sensitive group showed that three of the mi
crosatellite markers were significantly associated with cold tolerant
2.9. Statistical analysis for microsatellite marker data traits. The microsatellite marker SSR613719 was the most associated
markers with the cold tolerant trait. There are two genotypes for the
The trait differences among different microsatellite genotypes were marker SRR613719, ‘lm’ and ‘ll’, detected in the population. The ge
compared by t-test that was implemented in Microsoft Excel. The two- notype ‘ll’ has a higher percentage (56.3%) in cold sensitive group,
tailed probability for frequency distribution differences of a microsat while genotype ‘lm’ has a higher percentage (63.2%) in the cold tolerant
ellite genotype between extreme trait groups was calculated using an group (Chi-square test with Yates’ correction, p = 0.010979, Fig.3). The
online calculator of Fisher’s exact test (http://www.danielsoper.com/s microsatellite marker analysis confirmed the reliability of the QTL that
tatcalc3/). identified by ddRAD-seq.
By combining the microsatellite markers with the SNP markers, a
3. Result composite interval mapping analysis was carried out on the linkage
group chrLG18. The microsatellite marker SSR1136961 showed the
3.1. Cold-tolerance trait data for the full-sib family highest LOD value of 5.67, and the explained percentage of variance of
24%. Based on the fine mapping results, the QTL controlling for cold
Since a peak with a large number of tilapias died appeared during tolerance was localized between 18.93 Mb and 20.42 Mb on chrLG18 in
acute cold stress experiment, the collecting of the trait data for all in the GIFT tilapia (Fig.4).
dividuals was impossible. Therefore only individuals with accurately
recorded survival time were applied in the QTL mapping and following 3.4. Characterization of candidate genes in the QTL intervals
verification. The mean of body weight for the sampled individuals
(extreme traits) of the full-sib family (n = 192) was 12.44 ± 3.97 g. The It is hypothesized that genes located within this QTL interval may
offspring began to show unconscious at around 8.5 ◦ C, but with differ play a role in cold tolerance in tilapia. We identified 43 genes in the QTL
ential responses depending on its cold tolerance. The survival time for interval. The gene names and their annotation information are shown in
the first fish showing unconscious was defined as 0 min. The survival Supplementary Table 3.
time for the last fish was recorded as 227 min. Heart, gill, liver, intestine, muscle and brain tissues were collected
The 96 individuals with extreme traits were used for QTL mapping. from the test GIFT tilapia at 12 h post cold treatment (15 ◦ C) and from
3
C.H. Ai et al. Aquaculture 556 (2022) 738273
Fig. 1. The distribution of cold tolerant trait data for the full-sib family of GIFT tilapia. a. The survival time of tilapia individuals (N = 96) used for ddRAD-seq. b. The
survival time of tilapia individuals (N = 192) used for microsatellite marker validation of QTL.
Fig. 2. QTL analysis for cold tolerant trait in the full-sib family using SNP data. The genome-wide threshold value for LOD was 4.5 (p = 0.05). One major genome-
wide significant QTL interval was identified with LOD value of 5.6 and a percentage of explained variance of 21.5%.
under cold treatment (p < 0.05). In contrast, the gene expression for
Table 1
loc100697261 in heart, gill, gut and brain was significantly down-
The expression level for 9 genes in response to cold stress in different tissues.
regulated under cold treatment (p < 0.05). In addition, loc100696456
Gene name Heart Gill Liver Intestine Muscle Brain was significantly down-regulated in heart, muscle, gills and brain (p <
ndufv2 *↑ 0.05). These genes may play an important role in tilapia under cold
mtcl1 *↓ stress.
LOC100696456 *↓ *↓ **↓ **↓
paklipl *↑ *↑ *↑
LOC102083181 *↓ **↓
4. Discussion
LOC100697261 **↓ **↓ **↓ **↓
cc2d1b *↓ *↓ 4.1. QTL mapping on temperature tolerance traits in fishes
napg *↑
rab12 *↑
Temperature tolerance is one of the most important traits in fish.
* p < 0.05 ** p < 0.01 ↑ upregulation under cold stress ↓ downregulation under However, genetically improving temperature tolerance in fish is
cold stress. generally difficult with traditional methods since the difficulties in
measurements and low heritability with the traits. The heritability of
the control group at 12 h (25 ◦ C). Primer pairs were successfully cold tolerance in juvenile Nile tilapia is estimated to be 0.08 ± 0.17 for
developed for 14 of the candidate genes located in the QTL interval. We cooling degree hours (CDH) and 0.09 ± 0.19 for temperature at death
found 9 of the genes were significantly regulated by temperature using (TAD), estimated with an animal model (Charo-Karisa et al., 2005).
qRT-PCR (Table 2). There was also a study concluded that the heritability was not likely to
The gene pak1ip1, loc100696456 (cathepsin Z) and loc100697261 be more than 0.15 in their laboratory population for killifish (Heteran
(acetyl-coenzyme A synthetase, cytoplasmic) showed significant expres dria formosa) and did not detect a significant response to selection (Baer
sion changes in three and more tissues under treatment (Fig.5). The and Travis, 2000). Therefore MAS-based methods with linked markers
pak1ip1 gene was significantly upregulated in heart, gills and intestine may be alternative methods for selection of cold tolerant lines in fish.
4
C.H. Ai et al. Aquaculture 556 (2022) 738273
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C.H. Ai et al. Aquaculture 556 (2022) 738273
Fig. 5. The expression level of the gene pak1ip1, loc100696456 and loc100697261 in five tissues of GIFT tilapia. Under cold treatment, the expression of gene pak1ip1
was up-regulated in heart, gill and intestine; the expression of gene loc100697261 was down-regulated in heart, gill, intestine and brain; the expression of
loc100696456 was down-regulated in heart, muscle, gill and brain.
encodes a nucleolar factor involved in ribosomal stress response (Ross Consent for publication
et al., 2013). These genes may be important candidates for further
studies on cold regulation in tilapia. All authors have approved the manuscript and given their consent for
publication.
5. Conclusion
Declaration of Competing Interest
In this study, we identified a genome-wide significant QTL interval
on chrLG18 associated with cold tolerance in the GIFT tilapia by using The authors declare that they have no known competing financial
ddRAD-seq. Six microsatellite markers were successfully developed near interests or personal relationships that could have appeared to influence
or on the QTL regions of chrLG18 and was significantly associated to the work reported in this paper.
cold-tolerance trait. Nine candidate genes (e.g., pak1ip1, loc100696456
and loc100697261) in this QTL were found differentially expressed Acknowledgments
exposed to cold stress. This research supplies a basis for marker-assisted
selection of super lines with a high level of tolerance against cold stress We thank all anonymous reviewers for their comments on the
in the tilapia, and lays a foundation for the mining of regulatory genes manuscript.
under cold stress in tilapia.
Appendix A. Supplementary data
Funding
Supplementary data to this article can be found online at https://doi.
This work was supported by Key-Area Research and Development org/10.1016/j.aquaculture.2022.738273.
Program of Guangdong Province (no.2021B0202020001), Independent
Research and Development Projects of Maoming Laboratory References
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7
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artist, the decorator, the paper mills’ agent, and, last of all, the printer and the
binder. This was not the way the old-time printers had planned their books.
With all their mechanical limitations, they had followed architectural lines kept
consistent and harmonious because controlled by a single mind, while the
finished volume of the eighteen-nineties was a composite production of many
minds, with no architectural plan. No wonder that the volumes manufactured,
even in the most famous Presses, failed to compare with those produced in
Venice by Jenson and Aldus four centuries earlier!
When I succeeded John Wilson as head of the University Press in 1895, I
determined to carry out the resolution I had formed four years earlier, while
sitting in on the Eugene Field conference, of following the example of the
early master-printers so far as this could be done amidst modern conditions.
Some of my publisher friends were partially convinced by my contention that
if the printer properly fulfilled his function he must know how to express his
clients’ mental conception of the physical attributes of prospective volumes in
terms of type, paper, presswork, and binding better than they could do it
themselves. The Kelmscott publications, which appeared at this time, were of
great value in emphasizing my contention, for William Morris placed printing
back among the fine arts after it had lapsed into a trade.
I had no idea, when I presented my plan, of persuading my friends to
produce typographical monuments. No demand has ever existed for volumes
of this type adequate to the excessive cost involved by the perfection of
materials, the accuracy of editorial detail, the supreme excellence of
typography and presswork, and the glory of the binding. Sweynheim and
Pannartz, Gutenberg’s successors, were ruined by their experiments in Greek;
the Aldine Press in Venice was saved only by the intervention of Jean Grolier;
Henri Étienne was ruined by his famous Thesaurus, and Christophe Plantin
would have been bankrupted by his Polyglot Bible had he not retrieved his
fortunes by later and meaner publications. Nor was I unmindful of similar
examples that might have been cited from more modern efforts, made by
ambitious publishers and printers.
What I wanted to do was to build low-cost volumes upon the same
principles as de luxe editions, eliminating the expensive materials but retaining
the harmony and consistency that come from designing the book from an
architectural standpoint. It adds little to the expense to select a type that
properly expresses the thought which the author wishes to convey; or to have
the presses touch the letters into the paper in such a way as to become a part
of it, without that heavy impression which makes the reverse side appear like
an example of Braille; or to find a paper (even made by machine!) soft to the
feel and grateful to the eye, on which the page is placed with well-considered
margins; or to use illustrations or decorations, if warranted at all, in such a way
as to assist the imagination of the reader rather than to divert him from the
text; to plan a title page which, like the door to a house, invites the reader to
open it and proceed, its type lines carefully balanced with the blank; or to bind
(even in cloth!) with trig squares and with design or lettering in keeping with
the printing inside.
By degrees the publishers began to realize that this could be done, and
when once established, the idea of treating the making of books as a
manufacturing problem instead of as a series of contracts with different
concerns, no one of which knew what the others were doing, found favor. The
authors also preferred it, for their literary children now went forth to the
world in more becoming dress. Thus serving in the capacity of book architect
and typographical advisor, instead of merely as a contrasting printer, these
years have been lived in a veritable Kingdom of Books, in company with
interesting people,—authors and artists as well as publishers,—in a delightfully
intimate way because I have been permitted to be a part of the great
adventure.
During these years I have seen dramatic changes. Wages were somewhat
advanced between 1891 and the outbreak of the World War, but even at this
latter date the cost of manufacturing books was less than half of what it is now.
This is the great problem which publishers have to face today. When the cost
of everything doubled after the World War, the public accepted the necessity
of paying twice the price for a theater ticket as a matter of course; but when
the retail price of books was advanced in proportion to the cost of
manufacture, there was a great outcry among buyers that authors, publishers,
and booksellers were opportunists, demanding an unwarranted profit. As a
matter of fact, the novel which used to sell at $1.35 per copy should now sell
at $2.50 if the increased costs were properly apportioned. The publisher today
is forced to decline many promising first novels because the small margin of
profit demands a comparatively large first edition.
Unless a publisher can sell 5,000 copies as a minimum it is impossible for
him to make any profit upon a novel. Taking this as a basis, and a novel as
containing 320 pages, suppose we see how the $2.00 retail price distributes
itself. The cost of manufacture, including the typesetting, electrotype plates,
cover design, jacket, brass dies, presswork, paper, and binding, amounts to 42
cents per copy (in England, about 37 cents). The publisher’s cost of running
his office, which he calls “overhead,” is 36 cents per copy. The minimum
royalty received by an author is 10 per cent. of the retail price, which would
give him 20 cents. This makes a total cost of 98 cents a copy, without
advertising. But a book must be advertised.
Every fifty dollars spent in advertising on a five thousand edition adds a
cent to the publisher’s cost. The free copies distributed for press reviews
represent no trifling item. A thousand dollars is not a large amount to be spent
for advertising, and this means 20 cents a copy on a 5000 edition, making a
total cost of $1.18 per copy and reducing the publisher’s profit to 2 cents, since
he sells a two-dollar book to the retail bookseller for $1.20. The bookseller
figures that his cost of doing business is one-third the amount of his sales, or,
on a two-dollar book, 67 cents. This then shows a net profit to the retail
bookseller of 13 cents, to the publisher of 2 cents, and to the author of 20
cents a copy.
Beyond this, there is an additional expense to both bookseller and
publisher which the buyer of books is likely to overlook. It is impossible to
know just when the demand for a book will cease, and this means that the
publisher and the bookseller are frequently left with copies on hand which
have to be disposed of at a price below cost. This is an expense that has to be
included in the book business just as much as in handling fruit, flowers, or
other perishable goods.
When a publisher is able to figure on a large demand for the first edition,
he can cut down the cost of manufacture materially; but, on the other hand,
this is at least partially offset by the fact that authors whose books warrant
large first editions demand considerably more than 10 per cent. royalty, and
the advertising item on a big seller runs into large figures.
I wish I might say that I had seen a dramatic change in the methods
employed in the retail bookstores! There still exists, with a few notable
exceptions, the same lack of realization that familiarity with the goods one has
to sell is as necessary in merchandizing books as with any other commodity.
Salesmen in many otherwise well-organized retail bookstores are still painfully
ignorant of their proper functions and indifferent to the legitimate
requirements of their prospective customers.
Some years ago, when one of my novels was having its run, I happened to
be in New York at a time when a friend was sailing for Europe. He had
announced his intention of purchasing a copy of my book to read on the
steamer, and I asked him to permit me to send it to him with the author’s
compliments. Lest any reader be astonished to learn that an author ever buys a
copy of his own book, let me record the fact that except for the twelve which
form a part of his contract with the publisher, he pays cash for every copy he
gives away. Mark Twain dedicated the first edition of The Jumping Frog to “John
Smith.” In the second edition he omitted the dedication, explaining that in
dedicating the volume as he did, he had felt sure that at least all the John
Smiths would buy books. To his consternation he found that they all expected
complimentary copies, and he was hoist by his own petard!
With the idea of carrying out my promise to my friend, I stepped into one
of the largest bookstores in New York, and approached a clerk, asking him for
the book by title. My pride was somewhat hurt to find that even the name was
entirely unfamiliar to him. He ran over various volumes upon the counter, and
then turned to me, saying, “We don’t carry that book, but we have several
others here which I am sure you would like better.”
“Undoubtedly you have,” I agreed with him; “but that is beside the point. I
am the author of the book I asked for, and I wish to secure a copy to give to a
friend. I am surprised that a store like this does not carry it.”
Leaning nonchalantly on a large, circular pile of books near him, the clerk
took upon himself the education of the author.
“It would require a store much larger than this to carry every book that is
published, wouldn’t it?” he asked cheerfully. “Of course each author naturally
thinks his book should have the place of honor on the bookstalls, but we have
to be governed by the demand.”
It was humiliating to learn the real reason why this house failed to carry
my book. I had to say something to explain my presumption even in assuming
that I might find it there, so in my confusion I stammered,
“But I understood from the publishers that the book was selling very
well.”
“Oh, yes,” the clerk replied indulgently; “they have to say that to their
authors to keep them satisfied!”
With the matter thus definitely settled, nothing remained but to make my
escape as gracefully as circumstances would permit. As I started to leave, the
clerk resumed his standing position, and my eye happened to rest on the pile
of perhaps two hundred books upon which he had been half-reclining. The
jacket was strikingly familiar. Turning to the clerk I said severely,
“Would you mind glancing at that pile of books from which you have just
risen?”
“Oh!” he exclaimed, smiling and handing me a copy, “that is the very book
we were looking for, isn’t it?”
It seemed my opportunity to become the educator, and I seized it.
“Young man,” I said, “if you would discontinue the practice of letting my
books support you, and sell a few copies so that they might support me, it
would be a whole lot better for both of us.”
“Ha, ha!” he laughed, graciously pleased with my sally; “that’s a good line,
isn’t it? I really must read your book!”
The old-time publisher is passing, and the author is largely to blame. I have
seen the close association—in many cases the profound friendship—between
author and publisher broken by the commercialism fostered by some literary
agents and completed by competitive bids made by one publishing house to
beguile a popular author away from another. There was a time when a writer
was proud to be classified as a “Macmillan,” or a “Harper” author. He felt
himself a part of the publisher’s organization, and had no hesitation in taking
his literary problems to the editorial advisor of the house whose imprint
appeared upon the title pages of his volumes. A celebrated Boston authoress
once found herself absolutely at a standstill on a partially completed novel. She
confided her dilemma to her publisher, who immediately sent one of his
editorial staff to the rescue. They spent two weeks working together over the
manuscript, solved the problems, and the novel, when published, was the most
successful of the season.
Several publishers have acknowledged to me that in offering unusually
high royalties to authors they have no expectation of breaking even, but that to
have a popular title upon their list increases the sales of their entire line. The
publisher from whom the popular writer is filched has usually done his share
in helping him attain his popularity. The royalty he pays is a fair division of the
profits. He cannot, in justice to his other authors, pay him a further premium.
Ethics, perhaps, has no place in business, but the relation between author
and publisher seems to me to be beyond a business covenant. A publisher may
deliberately add an author to his list at a loss in order to accomplish a specific
purpose, but this practice cannot be continued indefinitely. A far-sighted
author will consider the matter seriously before he becomes an opportunist.
During the years that followed I served as his typographic mentor. He was
eager to try weird and ingenious experiments to bring out the various points of
his theories through unique typographical arrangement (see opp. page). It
required all my skill and diplomacy to convince him that type possessed rigid
limitations, and that to gain his emphasis he must adopt less complicated
methods. From this association we became the closest of friends, and
presuming upon this relation I used to banter him upon being so casual. His
copy was never ready when the compositors needed it; he was always late in
returning his proofs. The manufacture of a Fletcher book was a hectic
experience, yet no one ever seemed to take exceptions. This was characteristic
of the man. He moved and acted upon suddenly formed impulses, never
planning ahead yet always securing exactly what he wanted, and those
inconvenienced the most always seemed to enjoy it.
“I believe,” he used to say, “in hitching one’s wagon to a star, but I always
keep my bag packed and close at hand ready to change stars at a moment’s
notice. It is only by doing this that you can give things a chance to happen to
you.”
Among the volumes Fletcher had with him on board ship was one he had
purchased in Italy, printed in a type I did not recognize but which greatly
attracted me by its beauty. The book bore the imprint: Parma: Co’tipi Bodoniani.
Some weeks later, in a small, second-hand bookstore in Florence, I happened
upon a volume printed in the same type, which I purchased and took at once
to my friend, Doctor Guido Biagi, at the Laurenziana Library.
“The work of Giambattista Bodoni is not familiar to you?” he inquired in
surprise. “It is he who revived in Italy the glory of the Aldi. He and Firmin
Didot in Paris were the fathers of modern type design at the beginning of the
nineteenth century.”
“Is this type still in use?” I inquired.
“No,” Biagi answered. “When Bodoni died there was no one worthy to
continue its use, so his matrices and punches are kept intact, exactly as he left
them. They are on exhibition in the library at Parma, just as the old Plantin
relics are preserved in the museum at Antwerp.”
GIAMBATTISTA BODONI, 1740–1813
From Engraving at the Bibliothèque Nationale, Paris