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Letters Applied Microbiology - 2020 - Wang - Enhancing Secretion of Polyethylene Terephthalate Hydrolase PETase in Bacillus
Letters Applied Microbiology - 2020 - Wang - Enhancing Secretion of Polyethylene Terephthalate Hydrolase PETase in Bacillus
ORIGINAL ARTICLE
Significance and Impact of the Study: High-level expression of polyethylene terephthalate hydrolase
(PETase) facilitates biodegradation of PET. In this study, the expression elements, signal peptide and
promoter, in the secretory expression system, were optimizing for maximizing secreted expression of
PETase in Bacillus subtilis. The constructed strains yielded the greatest bis-(2-hydroxyethyl) terephthalate
degradation and PET-film etching activities.
Keywords Abstract
PETase, Bacillus subtilis, signal peptide,
promoter, biodegradation. The polyethylene terephthalate hydrolase (PETase) has been proved to have a
high activity to degrade polyethylene terephthalate (PET), but few studies have
Correspondence been carried on its secretion in Bacillus subtilis. In this study, the coding gene
Xiaole Xia, School of Biotechnology, Jiangnan of PETase, which was isolated from the Ideonella sakaiensis, was synthesized
University, Jiangsu Wuxi 214122, China.
and expressed in B. subtilis. Then, we evaluated the ability of five Bacillus
E-mail: xiaolexia@jiangnan.edu.cn
Jian Tian, Biotechnology Research Institute,
signal peptides to enhance PETase secretion by B. subtilis. The results indicated
Chinese Academy of Agricultural Sciences, that the SPamy-induced secretion of PETase was the highest, and its activity
Beijing 100081, China. against p-Nitrophenyl palmitate was about fourfold that of the natural signal
E-mail: tianjian@caas.cn peptide SPPETase. The weak promoter P43 provided sufficient time for
translation and folding of PETase, resulting in increased extracellular
†
These authors contributed equally to this expression. Use of P43 and SPamy in combination yielded the greatest bis-(2-
work.
hydroxyethyl) terephthalate degradation and PET-film etching activity due to
maximized secretion of PETase by B. subtilis. Our findings will facilitate
2020/0289: received 16 February 2020,
revised 28 April 2020 and accepted 4 May
biodegradation of PET plastic.
2020
doi:10.1111/lam.13312
Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology 235
1472765x, 2020, 3, Downloaded from https://ami-journals.onlinelibrary.wiley.com/doi/10.1111/lam.13312 by National Taiwan University, Wiley Online Library on [06/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
SPamy enhances secretion of PETase N. Wang et al.
2018). In 2016, Yoshida et al. (2016) identified a new terephthalate (BHET) degradation and PET-film etching
PET-degrading bacterium, Ideonella sakaiensis, which pro- activity. Our data show that it is possible to engineer
duced two a/b hydrolases, PETase and MHETase, and PET-degrading bacteria using B. subtilis WB600, and this
they could hydrolyse PET to terephthalic acid and ethy- will facilitate the biodegradation of PET plastic.
lene glycol. Subsequently, Han et al. (2017) and Joo et al.
(2018) analysed the crystal structure of PETase and
Results and discussion
revealed the mechanism of its degradation. In 2019, Seo
et al. (2019) confirmed that PETase hydrolyses PET at a
Determination of the optimum temperature of the
rate 55-fold to 120-fold higher than other enzymes, and
engineered bacteria
the mutant (S121E/D186H/R280A) designed by them had
139-fold increased degradation activity after incubation We investigated the growth and PETase secretion of
for 72 h (Son et al. 2019). WB600-P43-SPamy at 22, 28 and 37°C. The OD600 of the
The above studies focused on the mechanism of recombinant strain and the PETase activity in the super-
PETase. Few engineered bacteria or enzyme preparations natant were assayed over 48 h. The recombinant strain
can directly degrade PET film because it is a high-molec- grew more rapidly at 37°C than at 28°C. However, at
ular-weight polymer and cannot penetrate the cell mem- 37°C, PETase activity increased rapidly from 0 to 12 h,
brane. Moreover, PETase secretion by Ideonella sakaiensis peaking at 2373 U ml 1 at 12 h. However, it slowly
is very low (Huang et al. 2018). Bacillus subtilis is a well- decreased over the next 36 h and lowered to 50% of the
known biosafety strain with clear genetic background and peak value at 32 h, possibly due to heat-induced degrada-
mature genetic manipulation methods. It secretes proteins tion of PETase (Fig. 1). At 22°C, PETase activity
directly into the culture supernatant and is widely used in increased, but at a rate lower than that at 28°C (Fig. 1b).
industrial production of various heterologous enzymes At 28°C, PETase activity increased from 0 to 28 h, peak-
(van Dijl and Hecker 2013), such as pullulanase (Zhang ing at 31082 U ml 1 at 28 h; it did not decrease signifi-
et al. 2018) and b-mannanase (Song et al. 2017). Also, cantly during the subsequent 20 h. Thus, 28°C was
the spores have low water content, high temperature regarded as optimum for the recombinant strain in terms
resistance and tolerance to environmental factors. These of growth and secreted PETase activity and was used for
advantages make B. subtilis useful for exogenous expres- culturing in subsequent experiments.
sion (Gu et al. 2018), in which the promoter (Hirooka
and Tamano 2018) and signal peptide (Liu et al. 2019)
Effects of signal peptides on the secretory expression of
are important factors. In 2018, Huang et al. used six sig-
PETase
nal peptides, including the natural signal peptide of
PETase, to mediate the exogenous expression of PETase To maximize extracellular secretion, five Bacillus signal
in B. subtilis 168. The natural signal peptide SPPETase, a peptide fragments, that is, SPAprE, SPapr, SPBprA, SPSacC
twin-arginine signal peptide, showed the highest amount and SPamy, were fused to the N-terminus of PETase to
of secretion in a manner not dependent on the twin-argi- mediate its extracellular secretion under the control of the
nine translocation pathway (Huang et al. 2018). SPPETase P43 promoter. The five signal peptides belong to the Sec
is not native to B. subtilis, resulting in limited exogenous pathway, which are different to the twin-arginine natural
expression of PETase. signal of PETase. The natural signal peptide SPPETase was
In this study, B. subtilis WB600 was used to exoge- used as the control (Table S3). The recombinant plasmid
nously express PETase. The B. subtilis WB600 strain is a was introduced into B. subtilis WB600, and transformants
variant derived from B. subtilis 168 with 6 protease genes were selected and named WB600-P43-SPAprE, WB600-
be knocked out, which can significantly improve the sta- P43-SPapr, WB600-P43-SPBprA, WB600-P43-SPSacC,
bility of secreted proteins. SPPETase and the Bacillus- WB600-P43-SPamy and WB600-P43-SPPETase (Table S2).
derived signal peptides SPAprE, SPapr, SPBprA, SPSacC and Next, we evaluated the effects of the signal peptides on
SPamy were screened to overcome the low yield and activ- the activity and expression of PETase. The trend in
ity of PETase in B. subtilis. SPamy-mediated PETase secre- PETase activity over time was similar in the supernatants
tion was the highest, and the p-Nitrophenyl palmitate of all engineered strains. The activity increased rapidly
hydrolysis activity in the supernatant was about fourfold from 0 to 12 h and then more slowly from 12 to 28 h.
higher than that of SPPETase. The weak promoter P43 pro- After 28 h, the activity stabilized, and it began to decrease
vided sufficient time for translation and folding of at around 40 h. In addition, after 24 h, the PETase activ-
PETase, resulting in increased extracellular expression. ity in the WB600-P43-SPamy supernatant was approxi-
HPLC and SEM showed that greater secretion of PETase mately fourfold that of SPPETase, and the secretion effects
was associated with higher bis-(2-hydroxyethyl) of the five signal peptides selected in this study were
236 Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology
1472765x, 2020, 3, Downloaded from https://ami-journals.onlinelibrary.wiley.com/doi/10.1111/lam.13312 by National Taiwan University, Wiley Online Library on [06/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
N. Wang et al. SPamy enhances secretion of PETase
PETase (U ml–1)
250
0·6 200
OD600
0·4 150
100
0·2
50
0·0
0
0 10 20 30 40 50 10 20 30 40 50
Time (h) Time (h)
Figure 1 Growth of WB600-P43-SPamy according to temperature and secreted polyethylene terephthalate hydrolase (PETase) activity. (a) Growth
and (b) secreted PETase activity of WB600-P43-SPamy according to temperature. ( ) 22°C; ( ) 28°C; ( ) 37°C. [Colour figure can be viewed
at wileyonlinelibrary.com]
significantly higher than that of SPPETase; among these, of B. Amyloliquefaciens. Although they are all amylases’
the SPamy showed the greatest contribution to the PETase signal peptide, they belong to different strains and have
secretion (Fig. 2a). different coding sequences (Fig. S1), thus resulting in
Western blotting showed that PETase was present in such large secretion differences.
the culture supernatants of all of the engineered bacteria.
SPamy had the greatest effect on secretion, followed by
Effects of promoters on secretory expression of PETase
SPSacC, SPapr, SPBprA, SPAprE and SPPETase (Fig. 2b). How-
ever, in Huang’s study, no production was obtained with We used the constitutive promoters P43 and Pylb (Yu et al.
the signal peptide SPAmyE from B. subtilis. The signal pep- 2015) to drive the expression of PETase in B. subtilis. The
tide of SPamy used in this study comes from the amylase engineered bacteria were named WB600-P43-SPamy and
WB600-Pylb-SPamy (Table S2). The trend in supernatant
(a) 350 did not differ according to fermentation duration. Although
Pylb showed activity about eightfold that of P43 (Yu et al.
300
SPamy 2015), the activity of P43 was about 15% higher than that of
PETase (U ml–1)
250 SPapr Pylb (Fig. 3a). Western blotting at 24 h confirmed that the
SPSacC
200 PETase expression induced by P43 was higher than that of
Pylb, consistent with the activity assay (Fig. 3b). Thus,
150 PETase secretion does not require a strong promoter, and
SPBprA
100 SPAprE WB600-P43-SPamy exhibited the highest PETase expression,
suggesting that P43 and SPamy are optimal for maximizing
50 SPPETase
secreted expression of PETase in B. subtilis.
0
10 20 30 40 50
(b) Activity of the secreted PETase against BHET
Time (h)
To evaluate the ability of the engineered bacteria to
degrade plastics, their hydrolysis of BHET, the monomer
of polyethylene terephthalate, was assayed. The engineered
bacteria (signal peptides, WB600-P43-SPAprE, WB600-
Figure 2 Activity and expression of the polyethylene terephthalate
hydrolase (PETase) according to signal peptide. (a) Activity of PETase
P43-SPapr, WB600-P43-SPBprA, WB600-P43-SPSacC,
according to signal peptide. (b) Quantity of PETase in supernatant WB600-P43-SPamy and WB600-P43-SPPETase; promoters,
according to signal peptide. 1–6: WB600-P43-SPPETase, WB600-P43- WB600-P43-SPamy and WB600-Pylb-SPamy) were cultured
SPAprE, WB600-P43-SPapr, WB600-P43-SPBprA, WB600-P43-SPSacC and at 28°C for 24 h, and the supernatant was used to hydrol-
WB600-P43-SPamy. [Colour figure can be viewed at wileyonlinelibra yse BHET at 30°C for 2 h. Two hydrolysates were
ry.com]
Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology 237
1472765x, 2020, 3, Downloaded from https://ami-journals.onlinelibrary.wiley.com/doi/10.1111/lam.13312 by National Taiwan University, Wiley Online Library on [06/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
SPamy enhances secretion of PETase N. Wang et al.
238 Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology
1472765x, 2020, 3, Downloaded from https://ami-journals.onlinelibrary.wiley.com/doi/10.1111/lam.13312 by National Taiwan University, Wiley Online Library on [06/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
N. Wang et al. SPamy enhances secretion of PETase
(a) (b)
16 000 16 000
14 000 14 000
12 000 12 000
Peak area
Peak area
10 000 10 000
8000 8000
6000 6000
4000 4000
2000 2000
0 0
Con AprE apr BprA SacC amy SPPETase Con P43 Pylb
NONE SEI 10·0 kv X20,000 1 µm WD 6.1 mm NONE SEI 10·0 kv X20,000 1 µm WD 6.1 mm NONE SEI 10·0 kv X20,000 1 µm WD 6·1 mm
Figure 4 Bis-(2-hydroxyethyl) terephthalate (BHET) and polyethylene terephthalate (PET) film degradation activity according to signal peptide and
promoter. (a) Residual BHET after degradation by polyethylene terephthalate hydrolase (PETase) with different signal peptides. The peak areas
were 15 27390 13732 (Con), 96539 36416 (AprE), 188185 10727 (apr), 874500 31438 (BprA), 161515 20054 (SacC),
164515 25901 (amy) and 13 4495 65549 (PETase), respectively. (b) Residual BHET after degradation by PETase with different promoters.
The peak areas were 15 27390 13732 (Con), 160080 9518 (P43) and 321115 21079 (Pylb), respectively, Con, control. Degradation
of PET film treated with (c) LB medium (d) WB600-P43-SPPETase (e) WB600-P43-SPamy, as visualized by SEM. [Colour figure can be viewed at wile
yonlinelibrary.com]
encoding gene was amplified from pET27b(+)-PETase 500 ll of trichloroacetic acid (TCA) (M/V, 10%), devel-
using the primers PETase-F/PETase-R. The primers oped with 500 ll of Na2CO3 (M/V, 10%), and the pro-
TER1-F/TER1-R (HindIII) were used to amplify TamyL1 duct p-nitrophenol (p-NP) was continuously monitored
(a terminator from amylase of B. subtilis) from the stored at a wavelength of 410 nm. A standard curve was gener-
plasmid. Finally, the primers P43-F(Xbal)/TER1-R (Hin- ated based on the absorbance at 410 nm of 0, 5, 10, 15,
dIII) were used to amplify the P43-SPamy-PETase-TamyL1 20, 30, 40, 60, 80 and 100 lmol l 1 p-NP (Fig. S3).
fragment by overlapping PCR, followed by ligation to
pUBC19 by XbaI and HindIII to generate pUBC19-P43-
Signal peptide screening
SPamy-PETase. The recombinant plasmid was transferred
into competent B. subtilis WB600 cells to produce the The amy, SacC (from B. subtilis 168; GenBank,
engineered strain WB600-P43-SPamy (Ding et al. 2019). NP_390581.1), AprE (from B. subtilis 168; GenBank,
WB600-P43-SPamy was cultured at 22, 28 and 37°C in NP_388911.2), apr (from B. licheniformis WX-02; Gen-
LB medium at 200 rev min 1. The OD600 was determined Bank, AKQ72288.1) and BprA (from B. licheniformis WX-
at 4, 6, 8, 10, 12, 14, 16, 24, 28, 32, 40 and 48 h to moni- 02, GenBank, AKQ72888.1) signal peptides and the natu-
tor growth. The PETase activity in the supernatant at 4, ral signal peptide of PETase (SPPETase) were used. The
8, 12, 16, 24, 28, 32, 40 and 48 h was measured by the p- P43-sp (sp, signal peptide) fragments were amplified from
NPP method. The enzyme reaction containing 18 ml of PHY300PLK-P-sp-pul-TamyL (Wang et al. 2019) using
Tris-HCl (50 mmol l 1, pH 80) reaction buffer mixed the primers P43-F(XbaI)/sp-R. PETase-TamyL1 was
with 100 ll of p-NPP (8 lmol l 1 ml 1) was preheated amplified from pUBC19-P43-SPamy-PETase using the pri-
at 37°C for 5 min, and 100 ll of PETase solution was mers PETase-F/TER1-R (HindIII). After homologous
added for 10 min. Finally, the reaction was stopped with recombination of P43-sp and PETase-TamyL1, the
Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology 239
1472765x, 2020, 3, Downloaded from https://ami-journals.onlinelibrary.wiley.com/doi/10.1111/lam.13312 by National Taiwan University, Wiley Online Library on [06/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License
SPamy enhances secretion of PETase N. Wang et al.
product was ligated to pUBC19 by XbaI and HindIII to 40 mmol l 1 Na2HPO4-HCl (pH 70), 80 mmol l 1
generate the plasmid pUBC19-P43-sp-PETase (pUBC19- NaCl, 20% (v/v) DMSO and 2% (v/v) crude enzyme
P43-SPSacC-PETase, pUBC19-P43-SPAprE-PETase, solution. The mixture was incubated at 30°C for 2 h, fol-
pUBC19-P43-SPBprA-PETase and pUBC19-P43-SPapr- lowed by adding 96 ll of NaH2PO4-HCl (pH 25) and
PETase; Table S1). The encoding gene of PETase with 120 ll of DMSO, and the reaction was stopped by incu-
SPPETase fragment was constructed as follows: P43 and the bation at 85°C for 10 min. The reaction mixture was
PETase fragment without a signal peptide but with the passed through a 22-lm filter and analysed by HPLC
terminator TamyL1 were amplified from pUBC19-P43- over a 15-min period. The mobile phase was 5% glacial
SPamy-PETase using the primers P43-F (XbaI)/P43-SPPE- acetic acid, 0 min; 25% methanol, 5 min; 60% methanol,
Tase-R and SPPETase-PETase-F/TER1-R (HindIII), respec- 15 min; and 100% methanol. A Zorbax Eclipse Plus C18
tively. The SPPETase-encoding gene was synthesized by column (Agilent Technologies Inc. Palo Alto, California,
GenScript, and the P43-SPPETase-PETase fragment was USA) was used with a flow rate of 08 ml min 1, column
generated by overlapping PCR using the primers P43-F temperature of 35°C, the maximum pressure of 400 bar.
(XbaI)/TER1-R (HindIII). The fragment was digested with
XbaI/HindIII and ligated to pUBC19 to generate
Scanning electron microscopy
pUBC19-P43-SPPETase-PETase. All of the recombinant
plasmids were transferred into B. subtilis WB600 to gener- To evaluate their ability to degrade PET film, WB600-
ate WB600-P43-SPAprE, WB600-P43-SPapr, WB600-P43- P43-SPamy and the control strain WB600-P43-SPPETase
SPBprA, WB600-P43-SPSacC and WB600-P43-SPPETase were inoculated into LB medium and cultured at 28°C
(Table S2). All of the engineered strains were cultured in and 200 rev min 1 for 24 h. A 1 9 1-cm PET membrane
LB medium at 28°C and 200 rev min 1. The supernatants was washed in 1% SDS and sterile water and then added
were collected at 4, 8, 16, 20, 24, 28, 32, 40 and 48 h; the to the bacterial suspensions for 36 h. The PET films were
expression level of PETase was assayed according to removed, washed in 1% SDS and sterile water, and
‘Expression, purification and detection of PETase in observed by scanning electron microscopy (SEM) at 1 lm
E. coli’ and PETase activity against p-NPP according to to detect corrosion.
‘Construction of the engineered strain and determination
of its optimum temperature’.
Acknowledgements
We are grateful to the Institute of Zoology, Chinese Acad-
Promoter screening
emy of Sciences for helping us with antibody preparation
The promoter Pylb (Yu et al. 2015) was amplified from experiments.
stored plasmid using the primers Pylb-F(Xbal)/Pylb-
(amy)-R, and the SPamy-PETase-TamyL1 sequence was
obtained from pUBC19-P43-SPamy-PETase using the pri- Conflict of Interest
mers amy-F/TER1-R (HindIII). The Pylb and SPamy- No conflict of interest declared.
PETase-TamyL1 fragments were ligated by homologous
recombination to generate the fragment Pylb-SPamy-
PETase-TamyL1. The plasmid pUBC19-Pylb-SPamy-PETase References
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Supporting Information
conditions. Green Chem 21, 3827–3833. Additional Supporting Information may be found in the
Perz, V., Bleymaier, K., Sinkel, C., Kueper, U., Bonnekessel, M., online version of this article:
Ribitsch, D. and Guebitz, G.M. (2016) Substrate
specificities of cutinases on aliphatic-aromatic polyesters Figure S1. The sequence alignment between SPAmyE
and on their model substrates. New Biotechnol 33, 295–304. and SPamy.
Russell, D., Sambrook, J., Fritsch, E., Maniatis, T., Russell, Figure S2. BHET degradation products. 1–2, degrada-
D.W., Fritch, E., Russell, D. and Maccallum, P. (2001)
tion products.
Molecular Cloning. A Laboratory Manual. New York, NY:
Figure S3. The Standard curve of p-NP absorbance
Cold Spring Harbor Laboratory Press.
value at 410 nm with its concentration.
Seo, H., Kim, S., Son, H.F., Sagong, H.Y., Joo, S. and Kim,
Table S1. Plasmids used in this study.
K.J. (2019) Production of extracellular PETase from
Ideonella sakaiensis using sec-dependent signal peptides in
Table S2. Strains used in this study.
E. coli. Biochem Biophys Res Commun 508, 250–255. Table S3. Relevant information of signal peptides
Son, H.F., Cho, I.J., Joo, S., Seo, H., Sagong, H.Y., Choi, S.Y., selected in this study.
Lee, S.Y. and Kim, K.J. (2019) Rational protein Table S4. Primers used in this study.
Letters in Applied Microbiology 71, 235--241 © 2020 The Society for Applied Microbiology 241