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Smallpox
Smallpox
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The initial symptoms of the disease included fever and vomiting.[5] This was
followed by formation of ulcers in the mouth and a skin rash.[5] Over a number
of days, the skin rash turned into the characteristic fluid-filled blisters with a
dent in the center.[5] The bumps then scabbed over and fell off, leaving scars.
[5] The disease was transmitted from one person to another primarily through
prolonged face-to-face contact with an infected person or (rarely)
via contaminated objects.[6][13][14] Prevention was achieved mainly through
the smallpox vaccine.[9] Once the disease had developed, certain antiviral
medications could potentially have helped, but such medications did not
become available until after the disease was eradicated.[9] The risk of death
was about 30%, with higher rates among babies.[6][15] Often, those who
survived had extensive scarring of their skin, and some were left blind.[6]
Classification
Case fatality rate and frequency of smallpox by type and vaccination status
according to Rao case study[31]
Case fatality rate
Frequency (%)
Type of disease (%)
Unvac. Vac. Unvac. Vac.
Ordinary discrete 9.3 0.7 42.1 58.4
Ordinary confluent 62 26.3 22.8 4.6
Ordinary semiconfluent 37 8.4 23.9 7
Modified 0 0 2.1 25.3
Malignant aka Flat 96.5 66.7 6.7 1.3
Early hemorrhagic 100 100 0.7 1.4
Late hemorrhagic 96.8 89.8 1.7 2.0
There are two forms of the smallpox. Variola major is the severe and most
common form, with a more extensive rash and higher fever. Variola minor is a
less common presentation, causing less severe disease, typically discrete
smallpox, with historical death rates of 1% or less.[32] Subclinical
(asymptomatic) infections with variola virus were noted but were not common.
[33] In addition, a form called variola sine eruptione (smallpox without rash)
was seen generally in vaccinated persons. This form was marked by a fever
that occurred after the usual incubation period and could be confirmed only
by antibody studies or, rarely, by viral culture.[33] In addition, there were two
very rare and fulminating types of smallpox, the malignant (flat) and
hemorrhagic forms, which were usually fatal.
The initial symptoms were similar to other viral diseases that are still extant,
such as influenza and the common cold: fever of at least 38.3 °C
(101 °F), muscle pain, malaise, headache and fatigue. As the digestive
tract was commonly involved, nausea, vomiting, and backache often
occurred. The early prodromal stage usually lasted 2–4 days. By days 12–15,
the first visible lesions – small reddish spots called enanthem – appeared on
mucous membranes of the mouth, tongue, palate, and throat, and the
temperature fell to near-normal. These lesions rapidly enlarged and ruptured,
releasing large amounts of virus into the saliva.[34]
Variola virus tended to attack skin cells, causing the characteristic pimples,
or macules, associated with the disease. A rash developed on the skin 24 to
48 hours after lesions on the mucous membranes appeared. Typically the
macules first appeared on the forehead, then rapidly spread to the whole
face, proximal portions of extremities, the trunk, and lastly to distal portions of
extremities. The process took no more than 24 to 36 hours, after which no
new lesions appeared.[34] At this point, variola major disease could take
several very different courses, which resulted in four types of smallpox
disease based on the Rao classification:[35] ordinary, modified, malignant (or
flat), and hemorrhagic smallpox. Historically, ordinary smallpox had an
overall fatality rate of about 30%, and the malignant and hemorrhagic forms
were usually fatal. The modified form was almost never fatal. In early
hemorrhagic cases, hemorrhages occurred before any skin lesions
developed.[36] The incubation period between contraction and the first obvious
symptoms of the disease was 7–14 days.[37]
Ordinary
By the sixth or seventh day, all the skin lesions had become pustules.
Between seven and ten days the pustules had matured and reached their
maximum size. The pustules were sharply raised, typically round, tense, and
firm to the touch. The pustules were deeply embedded in the dermis, giving
them the feel of a small bead in the skin. Fluid slowly leaked from the
pustules, and by the end of the second week, the pustules had deflated and
began to dry up, forming crusts or scabs. By day 16–20 scabs had formed
over all of the lesions, which had started to flake off,
leaving depigmented scars.[38]
Ordinary smallpox generally produced a discrete rash, in which the pustules
stood out on the skin separately. The distribution of the rash was most dense
on the face, denser on the extremities than on the trunk, and denser on the
distal parts of the extremities than on the proximal. The palms of the hands
and soles of the feet were involved in most cases.[33]
Confluent
Sometimes, the blisters merged into sheets, forming a confluent rash, which
began to detach the outer layers of skin from the underlying flesh. Patients
with confluent smallpox often remained ill even after scabs had formed over
all the lesions. In one case series, the case-fatality rate in confluent smallpox
was 62%.[33]
Modified
Referring to the character of the eruption and the rapidity of its development,
modified smallpox occurred mostly in previously vaccinated people. It was
rare in unvaccinated people, with one case study showing 1–2% of modified
cases compared to around 25% in vaccinated people. In this form, the
prodromal illness still occurred but may have been less severe than in the
ordinary type. There was usually no fever during the evolution of the rash. The
skin lesions tended to be fewer and evolved more quickly, were more
superficial, and may not have shown the uniform characteristic of more typical
smallpox.[38] Modified smallpox was rarely, if ever, fatal. This form of variola
major was more easily confused with chickenpox.[33]
Malignant
Malignant hemorrhagic smallpox in a baker
during an 1896 epidemic in Gloucester, England. Died 8 days after admission.
Hemorrhagic
Early
An unvaccinated person with probable
hemorrhagic smallpox in a 1925 Milwaukee, Wisconsin epidemic. He later
died of the disease.
Late
Cause
Variola virus
Evolution
Examination of a strain that dates from c. 1650 found that this strain
was basal to the other presently sequenced strains.[47] The mutation rate of
this virus is well modeled by a molecular clock. Diversification of strains only
occurred in the 18th and 19th centuries.
Virology
Both enveloped and unenveloped virions are infectious. The viral envelope is
made of modified Golgi membranes containing viral-specific polypeptides,
including hemagglutinin.[49] Infection with either variola major virus or variola
minor virus confers immunity against the other.[34]
Variola major
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The more common, infectious form of the disease was caused by the variola
major virus strain.
Variola minor
Variola minor virus, also called alastrim, was a less common form of the virus,
and much less deadly. Although variola minor had the same incubation period
and pathogenetic stages as smallpox, it is believed to have had a mortality
rate of less than 1%, as compared to smallpox's 30%. Like variola major,
variola minor was spread through inhalation of the virus in the air, which could
occur through face-to-face contact or through fomites. Infection with variola
minor virus conferred immunity against the more dangerous variola major
virus.
Because variola minor was a less debilitating disease than smallpox, people
were more frequently ambulant and thus able to infect others more rapidly. As
such, variola minor swept through the United States, Great Britain, and South
Africa in the early 20th century, becoming the dominant form of the disease in
those areas and thus rapidly decreasing mortality rates. Along with variola
major, the minor form has now been totally eradicated from the globe. The
last case of indigenous variola minor was reported in a Somali cook, Ali Maow
Maalin, in October 1977, and smallpox was officially declared eradicated
worldwide in May 1980.[51] Variola minor was also called white pox, kaffir pox,
Cuban itch, West Indian pox, milk pox, and pseudovariola.
Genome composition
The genome of variola major virus is about 186,000 base pairs in length.[52] It
is made from linear double stranded DNA and contains the coding
sequence for about 200 genes.[53] The genes are usually not overlapping and
typically occur in blocks that point towards the closer terminal region of the
genome.[54] The coding sequence of the central region of the genome is highly
consistent across orthopoxviruses, and the arrangement of genes is
consistent across chordopoxviruses[53][54]
The center of the variola virus genome contains the majority of the essential
viral genes, including the genes for structural proteins, DNA
replication, transcription, and mRNA synthesis.[53] The ends of the genome
vary more across strains and species of orthopoxviruses.[53] These regions
contain proteins that modulate the hosts' immune systems, and are primarily
responsible for the variability in virulence across the orthopoxvirus family.
[53] These terminal regions in poxviruses are inverted terminal repetitions (ITR)
sequences.[54] These sequences are identical but oppositely oriented on either
end of the genome, leading to the genome being a continuous loop of
DNA[54] Components of the ITR sequences include an incompletely base
paired A/T rich hairpin loop, a region of roughly 100 base pairs necessary for
resolving concatomeric DNA (a stretch of DNA containing multiple copies of
the same sequence), a few open reading frames, and short tandemly
repeating sequences of varying number and length.[54] The ITRs
of poxviridae vary in length across strains and species.[54] The coding
sequence for most of the viral proteins in variola major virus have at least
90% similarity with the genome of vaccinia, a related virus used
for vaccination against smallpox.[54]
Gene expression
Gene expression of variola virus occurs entirely within the cytoplasm of the
host cell, and follows a distinct progression during infection.[54] After entry of
an infectious virion into a host cell, synthesis of viral mRNA can be detected
within 20 minutes.[54] About half of the viral genome is transcribed prior to
the replication of viral DNA.[54] The first set of expressed genes are
transcribed by pre-existing viral machinery packaged within the infecting
virion.[54] These genes encode the factors necessary for viral DNA synthesis
and for transcription of the next set of expressed genes.[54] Unlike most DNA
viruses, DNA replication in variola virus and other poxviruses takes place
within the cytoplasm of the infected cell.[54] The exact timing of DNA
replication after infection of a host cell varies across the poxviridae.
[54] Recombination of the genome occurs within actively infected cells.
[54] Following the onset of viral DNA replication, an intermediate set of genes
codes for transcription factors of late gene expression.[54] The products of the
later genes include transcription factors necessary for transcribing the early
genes for new virions, as well as viral RNA polymerase and other essential
enzymes for new viral particles.[54] These proteins are then packaged into new
infectious virions capable of infecting other cells.[54]