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1 - Adavnced Medium Optimization Strategy
1 - Adavnced Medium Optimization Strategy
Algal Research
journal homepage: www.elsevier.com/locate/algal
a r t i c l e i n f o a b s t r a c t
Article history: The biosynthesis of lutein in microalgae is critically influenced by the media components, which either increase
Received 28 August 2014 the key enzyme concentrations or act as cofactors for the enzymes involved in lutein metabolic pathway. In this
Received in revised form 15 November 2014 study, an advanced medium optimization strategy, involving Plackett–Burman design for screening the Bold's
Accepted 29 November 2014
Basal Medium (BBM) components, followed by artificial neural network modeling and particle swarm optimiza-
Available online 6 December 2014
tion (ANN–PSO), was implemented for improving the productivity of lutein in Chlorella minutissima. In this two-
Keywords:
step hybrid optimization endeavor, Plackett–Burman analysis helped select NaNO3, KH2PO4, MnCl2·4H2O and
Microalgae CuSO4·5H2O as critical components that were subsequently optimized by ANN–PSO technique. On experimental
Lutein validation, the optimized medium resulted in three-fold greater lutein productivity, as compared to BBM. Fur-
Plackett–Burman design thermore, the maximum lutein productivity of 3.45 ± 0.07 mg L−1 d−1 was obtained upon cultivation of
ANN modeling C. minutissima in a 2-L airlift photobioreactor using the optimized medium with appropriate process conditions.
Particle swarm optimization Thus, the hybrid optimization approach was instrumental in enhancing lutein productivity by about 187%, which
was significantly higher than the relevant values reported in literature. To our knowledge, this is the first report
on the application of an integrated optimization strategy for the enhanced lutein productivity in C. minutissima as
a model photo-autotrophic organism.
© 2014 Elsevier B.V. All rights reserved.
http://dx.doi.org/10.1016/j.algal.2014.11.010
2211-9264/© 2014 Elsevier B.V. All rights reserved.
R. Dineshkumar et al. / Algal Research 7 (2015) 24–32 25
Thus, the current study focuses on enhancing the lutein biosynthesis Table 1
in a microalga, Chlorella minutissima, by implementing an advanced hy- Plackett–Burman design matrix for 11 medium components with lutein productivity as
process response.
brid medium optimization strategy. The strategy involves the following
steps: (1) screening of critically influencing Bold's Basal Medium (BBM) Runs Medium components (mg L−1)a Lutein
constituents for lutein production by Plackett–Burman statistical de- productivity
A B C D E F G H J K L
(mg L−1d−1)b
sign; (2) optimization of the critical medium components by ANN–
PSO and (3) experimental validation of the predicted global optimal 1 750 150 75 150 75 75 1 0.2 4 1 0.2 0.223 ± 0.008
2 250 150 225 50 75 75 10 0.2 4 0.1 2 0.122 ± 0.004
values. Further, the performance of modified BBM is assessed by culti-
3 750 75 225 150 25 75 10 2 4 0.1 0.2 0.249 ± 0.005
vating the microalga in a 2-L airlift photobioreactor under appropriate 4 250 150 75 150 75 25 10 2 16 0.1 0.2 0.113 ± 0.003
process conditions. 5 250 75 225 50 75 75 1 2 16 1 0.2 0.074 ± 0.002
6 250 75 75 150 25 75 10 0.2 16 1 2 0.194 ± 0.007
2. Materials and methods 7 750 75 75 50 75 25 10 2 4 1 2 0.383 ± 0.010
8 750 150 75 50 25 75 1 2 16 0.1 2 0.274 ± 0.011
9 750 150 225 50 25 25 10 0.2 16 1 0.2 0.167 ± 0.006
2.1. Microalgae and culture conditions 10 250 150 225 150 25 25 1 2 4 1 2 0.150 ± 0.004
11 750 75 225 150 75 25 1 0.2 16 0.1 2 0.193 ± 0.007
The microalga C. minutissima (MCC-27) was procured from Centre 12 250 75 75 50 25 25 1 0.2 4 0.1 0.2 0.079 ± 0.003
for Conservation and Utilization of Blue Green Algae, Indian Agricultural a
A — NaNO3; B — K2HPO4; C — KH2PO4; D — MgSO4·7H2O; E — NaCl; F — CaCl2·2H2O; G —
Research Institute, New Delhi. It was maintained in BBM, which has the FeSO4·7H2O; H — CuSO4·5H2O; J — ZnSO4·7H2O; K — CoCl2·6H2O; and L — MnCl2·4H2O.
b
following composition in mg L−1: NaNO3, 250; KH2PO4, 175; K2HPO4, Data are the average values of three experiments ± S.D.
75; MgSO4·7H2O, 75; NaCl, 25; CaCl2·2H2O, 25; EDTA, 63.7; KOH, 31;
H3BO3, 11.42; FeSO4·7H2O, 4.98; ZnSO4·7H2O, 8.82; CuSO4·5H2O, productivity). The effect of each variable E(xi) was calculated by Eq. (1)
1.57; MnCl2·4H2O, 1.44; Co(NO3)·6H2O, 0.49; and MoO3, 0.71. The and the significance level (p-value) of each variable was determined by
screening and optimization experiments were carried out in 150 mL student's t-test using Eq. (2) and the analysis of these statistical parame-
shake flasks using a temperature controlled shaking incubator (illumi- ters is listed in Table 2.
nation facility of 50 μmol m−2 s−1) with the following cultivation con-
ditions: working volume, 80 mL; inoculum concentration, 0.05 g L−1; hX i
X
initial pH, 8.0; temperature, 28 °C; shaking speed, 120 rpm and contin- 2 RðHÞ− R ðL Þ
uous illumination. All experiments were performed in triplicates and Effect ¼ ð1Þ
N
expressed as mean with standard deviation (S.D.).
where, R(H) = all responses when variable xi at high levels, R(L) = all
2.2. Analytical methods responses when variable xi at low levels and N = total number of runs.
Table 3
Central composite design matrix of four critical medium components as independent process variables with lutein productivity (mg L−1 d−1) as the responses. Each experimental run was
carried out in triplicate.
using the regression equation (Supplementary Eq. A.1) as reported by updates its velocity and position at different time intervals according
Maji et al. [12]. The neuron connections in each layer are characterized to Eqs. (5) and (6), respectively.
by weights and bias. During training, the model updates its weights
and implements an activation function (Eq. (3)) which produces an out-
put accordingly. The model also minimizes the error between actual k
Vi ¼ w
k−1
þ Vi
k−1 k−1 k−1
þ C 1 R1 Li −P i
k−1 k−1
þ C 2 R2 Gi −P i ð5Þ
output and simulated output by iteratively feeding the error backwards
using FFBP algorithm. In ANN modeling, the optical neural network ar-
k k−1 k
chitecture has to be determined in order to avoid over-fitting of data Pi ¼ Pi þ Vi ð6Þ
and it was evaluated using mean squared error (MSE) as performance
index (Eq. (4)) and overall correlation coefficient (R) as precision of where, Vik and Vik − 1 are the velocities of particle i at iteration k and k − 1,
the model. respectively; wk − 1, inertia weight; C1 and C2, learning factors; R1 and R2,
uniformly distributed random variables between 0 and 1; Lki − 1, local best
solution of particle i; Gki − 1, global best solution of the group; and Pik and
X
Yj ¼ xi wi j þ b j ð3Þ Pik − 1 are the positions of particle i at iteration k and k − 1, respectively.
X ðExperimentalvalue−predictedvalueÞ2 The optimal combination of major and minor nutrients is not only
MSE ¼ ð4Þ
n essential for the growth of microalgae but also helps in the effective syn-
thesis of growth associated products like carotenoids. While the major
The developed ANN model was used as fitness function in conjunc- nutrients (nitrate, phosphate, magnesium, potassium) are required for
tion with PSO algorithm to determine the optimal input levels required the formation of various structural and functional components of cell,
for maximum lutein productivity. The computation of ANN–PSO was the minor nutrients or trace elements (iron, copper, cobalt, manganese,
carried out using MATLAB version 8.0 (Mathworks Inc., Natick, USA). zinc, molybdenum) act as cofactors for enzymes involved in various
metabolic pathways including growth and carotenoid production [13].
2.3.4. Particle swarm optimization algorithm In the current study, the initial task was to screen the nutrient variables
PSO, a population based algorithm, has the potential to evolve that influence lutein productivity in C. minutissima because one or more
during the search for optimal inputs in the developed ANN model. All nutrients and its concentration levels may affect the production signifi-
particles in the population will travel towards the global optimal so- cantly. Hence, Plackett–Burman screening experiments were carried out
lution by following the position of most successful neighbors. It for 11 medium variables with lutein productivity as process response
R. Dineshkumar et al. / Algal Research 7 (2015) 24–32 27
(Table 1). The ANOVA for 12 experiments is presented in Table 2. It was lutein synthesis. The percentage contribution of MnCl2·4H2O to the
observed that six out of the eleven medium components were statistically total effects and the F- and p-values of this trace element were found
significant (p b 0.05). The relative levels of significance of each nutrient to be 15.24, and 36.54 and 0.0038, respectively revealing its high signif-
are indicated by Pareto-chart (Fig. 1). icance next to nitrate (Fig. 1). Hence, this study suggests that the higher
concentration of this metal favors improved productivity of carotenoid
3.1.1. Significant nutrient components lutein in C. minutissima. Mn2 + serves as a cofactor for phytoene
Among the major nutrients, nitrate and phosphate (KH2PO4) showed synthase in the conversion of isopentenyl pyrophosphate (IPP) to
significant effect on lutein productivity. Nitrate showed the highest level phytoene, which is one of the critical pathways in carotenoid biosynthe-
of significance with an F-value of 133.67, a very low p-value of 0.0003 sis [17]. It is also an essential cofactor of metallo-enzyme, which brings
and % contribution of 55.76 (Table 2). Nitrogen accounts for 7–10% of oxygen evolution in Z-scheme photosynthesis [18], thus demonstrating
cell dry weight and it is very much essential for synthesis of fundamental the importance of manganese ions towards biomass growth and lutein
elements of cell [14]. Besides the role of promoting growth, nitrogen synthesis. The next important trace metal influencing lutein synthesis
source is also required for synthesis of enzymes involved in metabolic was Cu2+ with the F-value of 14.78 and percentage contribution of 6.16.
pathways towards lutein (xanthophyll) production [11]. The positive Cu2+ ions induce oxidative stress in cells and promote carotenogenesis
effect (Effect = 0.13) for nitrate suggests that the medium requires the for scavenging the free radicals. This is evident from the fact that
supplementation of high level of nitrate to improve lutein productivity. microalgal cells, when exposed to high metal concentrations, minimize
Potassium dihydrogen phosphate, the source of K+ and PO3− 4 , showed the oxidative stress by stress-induced counteractive mechanisms such
negative effect (Effect = −0.054) on lutein synthesis. The significance as enzymatic (superoxide dismutase, catalase) and non-enzymatic (ca-
of KH2PO4 in lutein synthesis is evident from the F-value of 23.41 with rotenoids, glutathione) reactions [19].
the percentage contribution of 9.77%. Phosphorous, which accounts for Fe2+ ion, another limiting micronutrient, has been reported to be
~1% of dry cell weight, plays an important role in synthesizing cellular important for processes such as photosynthesis, respiration, nitrogen
components required for growth and metabolism [14]. However, higher fixation and DNA synthesis. This ion is essential for the activity of β-
concentration of the inorganic salt KH2PO4 affected growth rate of this carotene hydroxylase, which converts ε,β-carotene to lutein, the final
microalga and in turn lutein productivity. This observation indicates step in lutein biosynthesis pathway [17]. It is also capable of inducing
that supplementing the medium with low level of phosphate can increase carotenogenesis via generation of hydroxyl radicals by Fenton reac-
lutein productivity in C. minutissima. This finding is in agreement with the tion [20]. Fe2 + contributes 4.80% to the total effects with the F- and
work of Sancho et al. [15], which reported that the excess phosphorus in p-values of 11.50 and 0.0275, respectively showing its significance
the medium (≥372 μM) reduced the growth rate of Scenedesmus obliquus. in this process. The requirement of high concentration of ferrous ions
In another work, Sánchez et al. [16] reported that high phosphate concen- may be attributed to the enhanced activity of β-carotene hydroxylase
tration in the medium decreased the biomass productivity of Scenedesmus and in turn lutein productivity. Although the role of Fe2+ ion on lutein
almeriensis. production is not yet reported, the use of ferrous ion as an inducer for
Besides the role of trace metals as key elements for inducing astaxanthin and β-carotene accumulation is documented [3,20]. On the
carotenogenesis, they also influence the uptake of essential nutrient el- contrary, Zn2+ showed negative effect (Effect = −0.034) with 3.83%
ements such as nitrogen, phosphorous and CO2 [4,13]. Hence, it is essen- contribution and an F-value of 9.18. This demonstrates that −1 level
tial to provide these trace metals at optimal levels in the medium for (i.e. at low concentration) of this ion in the medium favors lutein synthe-
concomitant microalgal growth and lutein synthesis. sis in this microalga. Co2+ was found to be insignificant towards lutein
In the present study, the cumulative percentage contribution of productivity in terms of % contribution (2.77) and p-value (0.0615). The
metal ions such as Mn2+, Cu2+, Fe2+ and Zn2+ to the total effects was negative effect of Zn2+ and insignificant nature of Co2+ ions indicate
found to be around 33% (Table 2), indicating their importance towards that these ions may not be required as cofactors for enzymes involved
in lutein synthesis.
Fig. 2. Regression plot of experimental and simulated values. The overall correlation coefficient, R close to 1 indicates the accuracy of the selected neural network topology.
productivity was significantly influenced by four medium constituents overall correlation coefficient (R) as the precision of the developed
(NaNO3, KH2PO4, MnCl2·4H2O and CuSO4·5H2O) and hence, these two model. The learning rate and performance of the neural network will
major and minor nutrients were considered for subsequent optimization be affected by the type of transfer function used [23]. In this study,
studies by ANN–PSO. tangent-sigmoidal transfer function at the hidden layer node and
pure-linear transfer function at the output layer node exhibited better
3.2. Optimization of critical nutrient components using ANN–PSO performance. The determination of number of neurons in the hidden
layer is also a crucial step in developing the optimal neural network ar-
The ANN model was developed by splitting the CCD experimental chitecture and it was evaluated as described earlier [7]. The optimum
data (Table 3) as follows: 70% for training, 15% for testing and 15% for number of neurons in the hidden layer was found to be 12 in connection
validating. The network utilizes a maximum part of the data for training with the minimum MSE value of 0.0005 and the maximum R-value of
and it also tests and validates at each run in order to avoid over-fitting of 0.998. R-value close to 1 (Fig. 2) revealed that there is no over-fitting
data. The network was trained using feed-forward back propagation al- of data between ANN-predicted and actual experimental outputs.
gorithm with mean squared error (MSE) as the performance index and Thus, 4-12-1 neural network topology (Fig. 3) was selected and the
Fig. 3. Schematic representation of optimized ANN architecture consists of an input layer with four neurons representing four medium variables, a hidden layer (12 neurons) with tangent
sigmoidal transfer function, and an output layer (one neuron) with pure linear transfer function.
R. Dineshkumar et al. / Algal Research 7 (2015) 24–32 29
Table 4
Stage wise development of the optimized medium for enhanced lutein productivity in C. minutissima performed in shake flasks.
Media Lutein concentration Lutein productivity Biomass productivity Lutein yield Fold increase of lutein
(mg L−1) (mg L−1 d−1) (g L−1 d−1) (mg g−1)
Concentration Productivity
Fig. 5. Time-course profiles of biomass, lutein concentration and sodium nitrate utilization of Chlorella minutissima grown in a 2-L airlift photobioreactor using (a) BBM and (b) optimized
BBM (operating conditions: light intensity, 150 μmol m−2 s−1; CO2, 2.5%; flow rate, 0.45 vvm).
microalgal growth rate was found to be 0.009 mM (i.e. 2.35 mg L−1 of obtained in small scale photobioreactor studies using S. almeriensis and
CuSO4·5H2O). This observation is evident from the study of Vaquero Desmodesmus sp., respectively [11,16]. But the lutein productivities
et al. [24], which reported that the lutein productivity of Coccomyxa could not be compared due to disparity in scale of operation. Therefore,
onubensis was increased by 20% while supplementing the medium with it would be justified if the comparison was drawn between the relevant
Cu2+ from 0.06 mM to 0.2 mM. In another study, the carotenoid content values obtained in reactor studies, wherein appropriately higher light in-
of C. vulgaris was found to be increased by around 2.5-fold, while increas- tensity and CO2 were provided.
ing Cu2+ ion concentration from 0.25 to 3 mg L−1 [27]. These studies sig-
nify the role of copper ions in biomass growth and lutein synthesis. 3.4. Comparison of lutein and biomass production profiles of C. minutissima
Thus, the application of Plackett–Burman design followed by ANN– cultivated using BBM and optimized BBM in a photobioreactor
PSO technique increased the lutein productivity substantially from
0.228 ± 0.007 mg L−1 d−1 to 0.655 ± 0.018 mg L−1 d−1 and the cellular The microalga C. minutissima was cultivated in a 2-L airlift
lutein content from 2.67 mg g− 1 to 5.58 mg g− 1 in C. minutissima photobioreactor with the optimized production medium and appro-
(Table 4). It is important to note that there is no literature data available priate process conditions as follows: 150 μmol m− 2 s− 1 light inten-
on lutein production by C. minutissima for comparison purpose. However, sity; 2.5% CO2 and 0.45 vvm flow rate. Fig. 5(a) and (b) shows the
the optimized intracellular lutein yield and concentration obtained in the time-course profiles of lutein, biomass concentration and nitrate uti-
present shake flask studies were found to be comparable with those lization of C. minutissima cultivated using both the unoptimized and
R. Dineshkumar et al. / Algal Research 7 (2015) 24–32 31
Table 5
Comparison of lutein concentration, productivity and yield of Chlorella minutissima MCC-27 with those reported in the medium optimization related studies in photoautotrophic modea.
Microalgal strains Medium used Operating conditions Lutein Lutein Lutein yield Biomass Specific References
concentration productivity (mg g−1) productivity growth rate
(mg L−1) (mg L−1 d−1) (g L−1 d−1) (d−1)
Desmodesmus sp. F51 Modified Bristol medium Batch, 1-L; 150 μmol m−2 s−1; – 2.31 4.69 0.494 1.99 [11]
2.5% CO2
Desmodesmus sp. F51 Modified Bristol medium Batch, 1-L; 600 μmol m−2 s−1; 7.6 3.05 3.97 0.767 2.50 [11]
2.5% CO2
Scenedesmus sp. Modified Basal medium Batch, 0.5-L; 160 μmol m−2 s−1; 5.6 0.51 2.67 0.190 0.66 [28]
10% CO2
Coccomyxaacidophila Urea supplemented basal Batch, 2-L; 150 μmol m−2 s−1; – 2.0 6.1 0.25 0.34 [29]
medium 5% CO2
Chlorella sorokiniana Modified Arnon medium Batch, 1-L; 690 μmol m−2 s−1; 25 2.5 3.0 0.84 2.64 [30]
(wild type) 1% CO2
Coccomyxa onubensis K9 medium 0.2 mM Cu2+ culture in – 2.12 6.20 0.42 0.51 [24]
semi-continuous mode
Chlorella minutissima Optimized BBM Batch, 2-L; 150 μmol m−2 s−1; 17.28 ± 0.50 3.45 ± 0.07 6.05 ± 0.12 0.57 ± 0.011 1.92 ± 0.02 This study
MCC-27 2.5% CO2
a
Studies related to heterotrophic cultivation and process optimization are not considered.
optimized BBM, respectively. It was found that the maximum lutein con- (project grant no. 560 (SANC.)/ST/P/S&T/SG-5/2011; date: 21-11-11) for
centration of 17.28 ± 0.5 mg L−1 was obtained when almost 95% of ni- the financial support. RD is very much grateful to Mr. Vivek Rangarajan
trate was consumed by C. minutissima. This finding is in agreement with for his valuable technical inputs on the design of the experiments.
the study of Ho et al. [9]. It was also observed that the increased light
intensity and CO2 supply improved both the microalgal growth rate and Appendix A. Supplementary data
lutein productivity significantly in photobioreactors (Fig. 5a and b), irre-
spective of the medium, when compared with those in shake flask Supplementary data to this article can be found online at http://dx.
studies. However, the maximum lutein productivity in the optimized doi.org/10.1016/j.algal.2014.11.010.
BBM was 3.45 ± 0.07 mg L−1 d−1, which was nearly three-fold higher
than that obtained in BBM (1.20 ± 0.02 mg L−1 d−1) under the same
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