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The Journal of Veterinary Medical Science: Advance Publication
The Journal of Veterinary Medical Science: Advance Publication
2 Full paper
5 fructo-oligosaccharide
9 Koga3, 4
10
14 259-1193, Japan
16
18
19 * Corresponding author.
22 FAX: +81-562-1629
23
24
1
25 ABSTRACT
27 2 fructose residues bound to sucrose through β2-1 bonds. In the present study, the
29 cats. Six healthy cats were administered 1 g/day of 1-kestose for 8 weeks followed by a
30 2-week wash-out period. Fecal samples were collected from cats after 0, 4, 8, and 10
31 weeks. The intestinal microbiota was examined by a 16S rRNA gene metagenomic
32 analysis and real-time PCR. Short-chain fatty acids were measured by GC/MS. The
33 results suggested that the intestinal bacterial community structure in feline assigned to
34 this study was divided into 2 types: one group mainly composed of the genus
35 Lactobacillus (GA) and the other mainly composed of the genus Blautia with very few
37 increased after the administration of 1-kestose (at 4 and 8 weeks) (p<0.1). The
40 acid levels was observed after the administration of 1-kestose for 4 weeks (p<0.1).
43
44 KEYWORD
46
2
47 INTRODUCTION
49 fructose residues bound to sucrose (GF) through β2-1 bonds; those with 1 and 2 fructose
50 residues bound to sucrose are termed 1-kestose (GF2) and nystose (GF3), respectively.
51 Commercially available FOS are mixtures of these components (FOS products), and
52 GF3 is the most abundant FOS component; however, GF2 used in this study is not the
53 dominant FOS component in these mixtures. For example, the percent ratios of GF2,
55 Meioligo (Meiji Co., Ltd., Tokyo, Japan) are 32.0, 53.6, and 9.8%, respectively. FOS
56 products are representative oligosaccharides currently being used in Japan and other
57 countries.
58 One of the dominant biological effects of FOS is its promotion of the growth of
59 Bifidobacterium (in vitro [24, 36], animals [28], and humans [5, 20, 40]). Furthermore,
60 the administration of FOS has been associated with a shortened defecation time and
61 improved lipid metabolism [8-10]. Anti-inflammatory activity in the intestines [11] and
63 and memory impairment in senescence-accelerated mice [31], have also been reported
64 in mice.
65 These beneficial effects of FOS are mainly exerted by the following mechanisms:
67 short-chain fatty acids (SCFA). SCFA, such as acetate, which are produced by these
68 beneficial bacteria using FOS, function not only as an energy source in large intestinal
69 mucosal cells [8], but also a substrate of energy metabolism in white adipose tissue,
70 skeletal muscle, and liver [7, 13, 27]. Consequently, SCFA promote peristalsis in the
3
71 intestines and also exert significant effects on systemic metabolism in the host.
72 The component of FOS products that stimulates the growth of bifidobacteria and
73 production of SCFA by bacteria has not yet been identified. Suzuki et al. [42] examined
74 differences in cultures to which FOS, 1-kestose, or nystose was added, and found that
75 bifidobacteria exhibited the most rapid growth with the greatest production of
76 metabolites, including lactic acid and acetic acid, in the culture with 1-kestose. Previous
77 studies on the assimilation of FOS using 17 strains of Lactobacillus spp. and 15 strains
78 of Bifidobacterium spp. also demonstrated that the assimilation of 1-kestose was the
79 highest among FOS components [16, 33]. Furthermore, a recent study showed that
80 1-kestose activated not only Bifidobacterium spp., but also butyric acid-producing
81 bacteria in the intestines [26]. Based on these findings, not only the genera
86 identified as the most dominant phylum [3, 19, 35, 41], together with Proteobacteria,
87 Bacteroidetes, Fusobacteria, and Actinobacteria [3, 19, 35, 41]. Previous studies
89 Barry et al. [4] fed healthy cats cellulose as a control or a diet containing FOS, and
90 investigated the influence of FOS on the intestinal microbiota. The findings obtained
91 showed that Bifidobacterium spp. levels were higher, whereas Escherichia coli levels
92 were lower in feces in the FOS group than in the cellulose group. Regarding SCFA,
93 butyric acid increased in the FOS group. Kanakupt et al. [23] fed cats diets containing
94 short chain (sc) FOS, GOS, or scFOS + GOS, and then investigated their influence on
4
95 intestinal bacteria. The findings obtained revealed that Bifidobacterium spp. levels were
96 significantly higher in all groups than in cats fed the diet containing no prebiotics. In a
98 spp.) increased in some cats [17]. However, the effects of administering 1-kestose to
99 cats have not yet been examined. Therefore, we herein investigated the influence of
101
103 Animals
104 All experiments were reviewed and approved by the Institutional Animal Welfare
105 Committee (Approval No. NBC-54-008). According to the body condition score (BCS)
106 [2], six healthy adult cats with a normal weight were obtained from KITAYAMA
107 LABES CO., LTD (Chiba, Japan) and then used in the present study. BCS was assessed
108 on a 5-point scale as follows: 1, very thin; 2, thin; 3, ideal; 4, overweight; and 5, obese.
109 The profiles of these cats were shown in Table 1. No markedly abnormal symptoms
110 were observed in the hematology or blood chemistry of the cats at the initiation of the
112
114 The total period of the study was 10 weeks. During the whole study period, cats
115 were fed a diet manufactured by Nisshin Petfood Inc. (Tochigi, Japan). The diet was
116 only supplemented with 1-kestose in the first 8 weeks and this was followed by a
117 2-week wash-out period. The diet consisted of 3.9% moisture, 37.6% protein, 13.6% fat,
118 6.6% ash, and 0.4% crude fiber. Each cat was fed a specific amount of the diet to
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119 maintain a constant body weight. Feeding was performed between 9 AM and 5 PM, and
120 water was given ad libitum all day. In addition to the daily diet, 1 g/day of 1-kestose
121 was added to the diet every day during the first 8-week period at 9 AM. The maximum
122 permissive dose of 1-kestose in cats was calculated from the maximum permissive dose
123 of 1-kestose in humans [32] according to the report of Reagan-Shaw et al. [34]. As a
124 result, it was found that the maximum permissive dose of the cat (average body weight:
125 3.0kg) used in the present study was 1.89 kg / day. For this reason, about a half amount,
126 1 g, was set as the daily dose. Fresh fecal samples (within 15 min of defecation) were
127 collected from cats after 0, 4, 8, and 10 weeks and stored immediately at – 80°C. Blood
128 samples were also collected from cats after 0, 4, 8, and 10 weeks and analyzed at the
130
132 Genomic DNA was extracted from feces according to the method described by
133 Takahashi et al [43]. Frozen fecal samples were thawed on ice, and 100 mg of each
134 sample was suspended in 4 M guanidium thiocyanate, 100 mM Tris-HCl (pH 9.0), and
135 40 mM EDTA and beaten with zirconia beads using a FastPrep FP100A instrument (MP
136 Biomedicals, Santa Ana, CA, USA). DNA was extracted from bead-treated suspensions
137 using the Magtration System 12GC and GC series MagDEA DNA 200 (Precision
138 System Science, Chiba, Japan). Following estimations of the DNA concentrations of
140 Wilmington, DE USA), the final concentration of DNA in samples was adjusted to 10
141 ng/µl.
142
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143 Bacterial 16S rRNA gene sequencing and sequence data analysis
144 Fecal bacterial 16S rRNA gene sequence was analyzed by the MiSeq system
145 (Illumina, San Diego, CA, USA) as previously described [43]. The V3-V4
146 hypervariable regions of 16S rRNA were PCR amplified from microbial genomic DNA
147 using universal primers for bacteria (341f/R806) [12, 30] and the dual-index method
148 [21]. Barcoded amplicons were sequenced using the paired-end method with a 2 ×
149 284-bp cycle run on the MiSeq system by MiSeq Reagent kit v.3 (600 Cycles) (Illumina,
150 San Diego, CA, USA). After the alignment, overlapping regions within paired-end reads
151 were merged and primer regions were omitted, which resulted in a 430-bp sequence.
152 Only reads with more than 99% of its sequence having quality value scores of ≥20 were
153 extracted for further analyses [43]. Chimeric sequences detected by Usearch6.1.544_i86
154 were precluded [15]. Based on these sequences, species were identified with an 97%
155 confidence threshold using Metagenome@KIN analysis software (World Fusion, Osaka,
156 Japan) and the TechnoSuruga Lab Microbial Identification database DB-BA 10.0
157 (TechnoSuruga Laboratory, Shizuoka, Japan) [21, 25]. The abundance of each taxon
158 was calculated at both the phylum and genus levels (Supplemental Tables 3, 4, 5, and 6).
159
160 Quantitative analysis of intestinal microbiota in cat feces using real-time PCR
161 Using the same extracted DNA sample as that in bacterial 16S rRNA gene
162 sequencing, a quantitative analysis of the following intestinal organisms was performed
163 by real-time PCR (qPCR) detecting specific gene sequence in each 16S rRNA: all
164 bacteria [30], Bifidobacterium spp. [18], Lactobacillus spp. [39], Clostridium cluster
165 XIV [38], and Clostridium perfringens [44]. A list of the primers used is shown in Table
166 2.
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167
169 The measurement of SCFA, including acetate, propionate, and butyrate was
171 Bellefonte, PA, USA). GC/MS samples were prepared as follows: 50 mg (wet weight)
172 of fecal samples were suspended in 400 µl pure water. The suspension was stirred for 10
173 min and centrifuged at 15,000 × g at 4°C for 5 min. Twenty microliters of 20 mM
174 2-ethyl butyrate, 80 µl of 3N HCl, and 400 µl of diethylether were then added to the
175 supernatant.
176
178 Statistical analyses were performed using SPSS Statistics 26 software package
179 (SPSS Inc., Chicago, Illinois) and Microsoft Excel (Excel version in Microsoft Office
180 2010 for Windows). The normality of data was examined by the Shapiro-Wilk test. And
181 data were analyzed using Wilcoxon signed-rank test followed by the correction with
182 FDR method (the Benjamini & Hochberg method for adjustments with FDR (BH
183 method)). Differences were considered as significant at P<0.05 and tendency at p <0.1.
184
185 RESULTS
187 The administration of 1-kestose (1 g/day) did not significantly influence body
188 weight (Supplemental Figure 1) or food intake. The number of platelets was
190 and blood biochemical parameters were not altered by 1-kestose administrartion
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191 (Supplemental Table 1 and 2). And no abnormal symptoms including the petechia
192 caused by decreasing the number of platelets were observed throughout the 10-week
194
196 The total numbers of reads analyzed for each sample at the different time points (0,
199 classified into 2 types based on the analysis at the genus level: Two animals in which
200 the abundance of Lactobacillus was the highest were classified as Group A (GA), and 4
201 in which the abundance of Blautia was the highest with very few Lactobacillus were
202 classified as Group B (GB) (Fig. 1, Table 1). At the beginning of the experiment (0
203 weeks), the abundance of Lactobacillus (phylum Firmicutes) was high (34.4%) in GA.
204 Although its abundance slightly increased and decreased at 4 (38.4%) and 8 (28.6%)
205 weeks after the treatment, respectively, almost no change (31.7%) was noted at 2 weeks
206 after the termination of the 1-kestose treatment (10 weeks). In GB, Blautia accounted
207 for 18.1% at 0 weeks, and its abundance also showed no evident changes after the
208 1-kestose treatment; 14.0, 16.5% and 18.4% at 4, 8, and 10 weeks, respectively. The
210 weeks, while the administration of 1-kestose transiently increased Lactobacillus to 2.4%
211 at 4 weeks. However, its level decreased to 0.1% close to the baseline at 10 weeks.
212 Among the genera representing >0.1% of the total microbiota at 0 weeks, the
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215 slightly increased by the administration of 1-kestose (Table 3). The abundance of the
216 genus Megasphaera, a butyric acid-producing bacterium, was 2.9% at 0 week, and
217 significantly increased to 4.3 and 5.9% at 4 and 8 weeks, respectively (p<0.1).
218 The 2-dimentional display of principal coordinate analysis (PCoA) of the overall
219 structure of the intestinal microbiota is shown in Fig. 2. The clear difference observed in
220 the bacterial community composition between GA and GB, which was shown in Fig. 1,
221 was confirmed in the PCoA analysis. Individual samples at 0 week (shown by blue
222 symbols) were clearly separated into “GA” (ID No. 1, 2) and “GB” (ID No. 3, 4, 5, 6)
224 Moreover, 4 (red), 8 (green), and 10 (purple) weeks after the 1-kestose treatment,
225 the sample symbols for the GA group moved along the horizontal axis, whereas those
226 for the GB group moved along the vertical axis. Samples were all within the original
227 frames of “GA” and “GB”, even after the administration of 1-kestose, and no major
228 change occurred in the basic structure of the bacterial community in either group.
232 Therefore, to quantitatively assess the effects of 1-kestose on these bacteria, their
234 The total number of bacteria did not change in the GA or GB group after the
235 administration of 1-kestose. The number of Bifidobacterium was slightly higher after
236 the administration of 1-kestose at 4 and 8 weeks than at the initiation of the study
237 (p<0.1) when the statistical analysis was performed using all animals (N=6). Slight
238 increases were observed for both GA and GB. However, the number of bacteria returned
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239 to the pretreatment level at 2 weeks after the discontinuation of 1-kestose (10 weeks). In
240 the other bacteria groups, no significant changes were observed even when all animals
241 were included in the statistical analysis. In summary, the 1-kestose treatment slightly
246 SCFA in feces were measured using GC/MS (Fig. 4). 1-kestose-induced changes in
247 SCFA levels in all animals (N=6) were subjected to a statistical analysis. No significant
248 changes were noted in acetic acid or propionic acid levels, whereas butyric acid levels
249 were slightly higher after the administration of 1-kestose for 4 weeks than at 0 week
250 (p<0.1). Elevated butyric acid levels returned to the pretreatment level after 8 weeks of
252 increases were observed in the levels of acetate or propionate, even in the group of all
253 animals.
254
255 DISCCUSION
256 In feline assigned to this study, two kinds of gut microbial community composition
257 were confirmed by the 16S rRNA gene metagenomic analysis; one group mainly
258 composed of the genus Lactobacillus (GA) and the other mainly composed of the genus
259 Blautia with few Lactobacillus (GB). When the smallest fructo-oligosaccharide
260 component, 1-kestose, was administered, no significant changes were observed in the
261 abundance or bacterial number of Lactobacillus, whereas slight changes were noted in
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263 butyrate-producing bacterium, and intestinal butyric acid levels when GA and GB were
265 In the present study, the microbiota composition of cats were clearly divided into
266 two distinct types including GA and GB. The difference was so evident that was
267 considered the difference of “enterotype”, which had been separated in a human study
268 [1]. The study on the intestinal microbiota in healthy humans revealed that the
269 microbiota may be classified into 3 patterns (enterotypes) with different dominant
270 bacterial groups, and a relationship between these differences in the microbiota and
271 medium- to long-term eating habits has been reported [1]. In addition, a controlled -
272 feeding study of human subjects showed that a minor change of microbiome
273 composition was detected within 24 hours of initiating different diets, but, the
274 enterotype of the subject remained stable during the 10-day study. Therefore, this study
275 also demonstrated the alternative enterotype state was associated with long term (-years)
276 diet [46]. In our study, all cats were fed the same diet during the study period, but the
277 diet up to be enrolled in the present study might be different since each cat had the
278 different background. Therefore, there is a possibility that the difference of the
279 enterotype was formed. Furthermore, marked changes were not observed in the basic
280 composition of the microbiota in GA or GB when the potent prebiotic, 1-kestose, was
281 administered for a relatively short period (8 weeks), which is consistent with the
283 weak due to a small number of samples analyzed in the present study.
284 The administration of 1-kestose did not increase the abundance or number of
285 Lactobacillus further in GA, in which Lactobacillus was already dominant. On the other
286 hand, its administration slightly increased the abundance of Lactobacillus in GB, in
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287 which the population size of the genus Lactobacillus was very low. Hidaka et al.
288 reported a similar phenomenon for the genus Bifidobacterium [20] in a study to
289 investigate the influence of FOS on intestinal bacteria in humans. In that study, subjects
290 with a small number of fecal bifidobacteria showed a 10,000-fold higher count after the
291 FOS treatment than in the initial count. In contrast, the bacterial number did not show
293 In a real-time PCR assay, the number of Bifidobacterium was slightly higher after
294 the administration of 1-kestose (at 4 and 8 weeks) than at the study initiation (0 week)
295 in all animals (p<0.1). Previous studies reported that the administration of FOS
296 increased the genus Bifidobacterium in cats [4, 23]. Barry et al. [4] fed cats weighing
297 5.7 kg on average a diet containing 4% FOS for 30 days. In that study, 68.7 g/day diet
298 on average was ingested, and 4% FOS was similar to 2.7 g/day of FOS. The logarithmic
299 number of Bifidobacterium in feces 25-26 days after the initiation of the
300 FOS-containing diet was 11.6/g feces, which was 15.8-fold higher than that in the
301 control cellulose group (10.4/g feces). Therefore, the bifidogenic effect of 1 g of FOS
302 was 5.9- times higher than that of the cellulose group. In the present study, the duration
304 Bifidobacterium after 4 and 8 weeks of administration increased by 3.0- and 5.5-fold.
305 This result suggested that the bifidogenic effect of 1-kestose was similar to that of FOS
306 and the administration of 1-kestose was demonstrated to increase bifidobacteria in cats,
309 after the administration of 1-kestose (at 4 and 8 weeks) than at the initiation of the study
310 (0 week) (p<0.1). M. elsdenii, which was identified in this genus by an analysis at the
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311 species level in samples, is a lactic acid-assimilating butyric acid-producing bacterium
312 [29]. M. elsdenii is beneficial for ruminants, such as cows and sheep, and its use as a
313 probiotic in rats and pigs has also been reported [22, 47]. A previous study demonstrated
314 that the abundance of the genus Megasphaera (M. elsdenii) in cats aged 18 and 30
315 weeks was at most 0.1 and 0.2%, respectively, but markedly increased to 8.4% at 42
316 weeks [14], with the highest (87-fold) increase among all genera. In the present study,
317 the mean abundance of Megasphaera increased approximately 1.5- and 2-fold after the
318 administration of 1-kestose for 4 and 8 weeks, respectively. Butyrate levels also slightly
319 increased (p<0.1) at 4 weeks when analyzed in the all animals group, which is
320 consistent with the increase observed in the abundance of Megasphaera at 4 weeks.
321 Therefore, 1-kestose-induced elevations in intestinal butyric acid levels in the present
323 Megasphaera. In addition, in our previous study in which rats were fed diets containing
324 1-kestose at different concentrations (0.5-5.0%) for 4 weeks, butyric acid levels in cecal
325 contents significantly increased in the groups fed a diet containing 2.5% or more
326 1-kestose [45]. Since evidence to show that 1-kestose stimulates butyrate-producing
327 bacteria to produce butyrate in the intestines has not yet been obtained for prebiotics
328 other than 1-kestose, the use of 1-kestose as a new generation prebiotic is promising for
330 SCFA, including acetate, propionate, and butyrate, transiently increased at 4 weeks,
331 but returned to pretreatment levels at 8 weeks in all groups after the 1-kestose treatment.
332 Among these SCFA, only butyrate observed a slight increase (p<0.1) at 4 weeks. These
333 fluctuations in SCFA levels may be explained by “resilience”, which is widely observed
334 in biology. “Resilience” maintains homeostasis in the intestinal microbiota [37]. For
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335 example, when a component exerting an influence on the microbiota was administered
336 for the same period as the present study, it temporarily influenced the status of intestinal
337 bacteria. However, this influence did not persist, and the status finally returned to the
338 original level through the “resilience” phenomenon. Therefore, by the administration of
339 1-kestose with a higher dose, resilience may have broken through into a new constant
343 (MCTs) that is known as a main absorption mechanism in colon epithelial cells [6, 7]. In
344 a previous report, butyric acid increased MCT1 expression and activity in human
345 intestinal epithelial cells [6]. Similarly, increased butyric acid may have activated
346 MCT1 and promoted SCFA absorption in the present study, through which the SCFA
348 The present study demonstrated that 1-kestose activates not only Bifidobacterium,
349 but also the butyric acid-producing genus, Megasphaera in the intestines of cats.
350 Butyric acid levels increased after 4 weeks of the administration of 1-kestose. It is well
351 known that butyrate exerts significant effects on the integrity of immunity as well as
352 energy supply in intestinal epithelial cells. These results suggest that the administration
354 butyrate-producing bacteria, and, thus, is expected to promote the well-being of cats by
356
357 ACKNOWLEDGMENT
15
359 Mikako Shinohara: Methodology, Investigation, Data curation, Visualization,
362 Methodology. Seiji Kimura: Animal experiment, Data curation. Yasuhiro Koga: Writing,
365 This research did not receive any specific grants from funding agencies in the
368 Mikako Shinohara and Takumi Tochio are employees of B Food Science Co., Ltd.,
369 which is the producer of 1-kestose used in the present study. Masaharu Kiyosue and
371
372 REFERENCES
373 1. Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R.,
374 Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas,
375 F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem,
376 M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B.,
377 Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D.,
378 Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M.,
379 Brunak, S., Doré, J.; MetaHIT Consortium, Antolín, M., Artiguenave, F., Blottiere,
380 H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C.,
381 Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon,
382 E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G.,
16
383 Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., Mérieux, A., Melo
384 Minardi, R., M'rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M.,
385 Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela,
386 E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D. and Bork, P. 2011.
388 2. Baldwin, K., Bartges, J., Buffington, T., Freeman, L. M., Grabow, M., Legred, J.
389 and Ostwald, D. Jr. 2010. AAHA nutritional assessment guidelines for dogs and
391 3. Barko, P. C., McMichael, M. A., Swanson, K. S. and Williams, D. A. 2018. The
393 4. Barry, K. A., Wojcicki, B. J., Middelbos, I. S., Vester, B. M., Swanson, K. S. and
394 Fahey, G. C. Jr. 2010. Dietary cellulose, fructooligosaccharides, and pectin modify
395 fecal protein catabolites and microbial populations in adult cats. J Anim Sci. 88:
396 2978-2987.
397 5. Bouhnik, Y., Flourié, B., Riottot, M., Bisetti, N., Gailing, M. F., Guibert, A., Bornet,
401 6. Borthakur, A., Saksena, S., Gill, R. K., Alrefai, W. A., Ramaswamy, K. and Dudeja,
405 7. Brown, A. J., Goldsworthy, S. M., Barnes, A. A., Eilert, M. M., Tcheang, L.,
406 Daniels, D., Muir, A. I., Wigglesworth, M.J., Kinghorn, I., Fraser, N. J., Pike, N. B.,
17
407 Strum, J. C., Steplewski, K. M., Murdock, P. R., Holder, J. C., Marshall, F. H.,
408 Szekeres, P. G., Wilson, S., Ignar, D. M., Foord, S. M., Wise, A. and Dowell, S. J.
409 2003. The Orphan G protein-coupled receptors GPR41 and GPR43 are activated by
410 propionate and other short chain carboxylic acids. J. Biol. Chem. 278:
411 11312-11319.
412 8. Canfora, E. E., Jocken, J. W. and Blaak, E. E. 2015. Short-chain fatty acids in
413 control of body weight and insulin sensitivity. Nat. Rev. Endocrinol. 11: 577-591.
414 9. Cani, P. D., Neyrinck, A. M., Maton, N. and Delzenne, N. M. 2005. Oligofructose
415 promotes satiety in rats fed a high-fat diet: involvement of glucagon-like Peptide-1.
417 10. Cani, P. D., Knauf, C., Iglesias, M. A., Drucker, D. J., Delzenne, N. M. and
418 Burcelin, R. 2006. Improvement of glucose tolerance and hepatic insulin sensitivity
421 11. Capitán-Cañadas, F., Ocón, B., Aranda, C. J., Anzola, A., Suárez, M. D., Zarzuelo,
423 intestinal anti-inflammatory activity in the CD4+ CD62L+ T cell transfer model of
425 12. Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A.,
426 Turnbaugh, P. J., Fierer, N. and Knight, R. 2011, Global patterns of 16S rRNA
427 diversity at a depth of millions of sequences per sample. Proc. Natl. Acad. Sci. U. S.
429 13. Cummings, J. H., Pomare, E. W., Branch, W. J., Naylor, C. P. and Macfarlane, G. T.
430 1987. Short chain fatty acids in human large intestine, portal, hepatic and venous
18
431 blood. Gut. 28: 1221-1227.
432 14. Deusch, O., O'Flynn, C., Colyer, A., Swanson, K. S., Allaway, D. and Morris, P. A.
433 2015. Longitudinal Study of the Feline Faecal Microbiome Identifies Changes into
434 Early Adulthood Irrespective of Sexual Development. PLOS ONE, 10: e0144881.
435 15. Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. and Knight, R. 2011.
436 UCHIME 3mproves sensitivity and speed of chimera detection. Bioinformatics. 27:
437 2194–2200.
438 16. Endo, A., Nakamura, S., Konishi, K., Nakagawa, J. and Tochio, T. 2016. Variations
442 2017. Molecular assessment of the fecal microbiota in healthy cats and dogs before
443 and during supplementation with fructo-oligosaccharides (FOS) and inulin using
445 18. Gueimonde, M., Tölkkö, S., Korpimäki, T. and Salminen, S. 2004. New real-time
448 19. Handl, S., Dowd, S. E., Garcia-Mazcorro, J. F., Steiner, J. M. and Suchodolski, J. S.
449 2011. Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal
450 bacterial and fungal communities in healthy dogs and cats. FEMS. Microbiol. Ecol.
452 20. Hidaka, H., Eida, T., Takizawa, T., Tokunaga, T. and Tashiro, Y. 1986. Effects of
19
455 21. Hisada, T., Endoh, K. and Kuriki, K. 2015. Inter- and intra-individual variations in
456 seasonal and daily stabilities of the human gut microbiota in Japanese. Arch.
458 22. Hashizume, K., Tsukahara, T., Yamada, K., Koyama, H. and Ushida, K. 2003.
462 23. Kanakupt, K., Vester Boler, B. M., Dunsford, B. R. and Fahey, G.C. Jr. 2011.
465 metabolite concentrations, and large bowel microbial ecology of healthy adults cats.
468 lactic acid bacteria and bifidobacteria. Appl. Environ. Microbiol. 66: 2682-2684.
469 25. Kasai, C., Sugimoto, K., Moritani, I., Tanaka, J., Oya, Y., Inoue, H., Tameda, M.,
470 Shiraki, K., Ito, M., Takei, Y. and Takase, K. 2015. Comparison of the gut
474 26. Koga, Y., Tokunaga, S., Nagano, J., Sato, F., Konishi, K., Tochio, T., Murakami, Y.,
475 Masumoto, N., Tezuka, J. I., Sudo, N., Kubo, C. and Shibata, R. 2016.
478 27. Le Poul, E., Loison, C., Struyf, S., Springael, J. Y., Lannoy, V., Decobecq, M. E.,
20
479 Brezillon, S., Dupriez, V., Vassart, G., Van Damme, J., Parmentier, M. and Detheux,
480 M. 2003. Functional characterization of human receptors for short chain fatty acids
481 and their role in polymorphonuclear cell activation. J. Biol. Chem. 278:
482 25481-25489.
483 28. Mao, B., Li, D., Zhao, J., Liu, X., Gu, Z., Chen, Y. Q., Zhang, H. and Chen, W.
485 the composition of fecal microbiota in mice. J. Agric. Food. Chem. 63: 856-863.
486 29. Marounek, M., Fliegrova, K. and Bartos, S. 1989. Metabolism and some
489 30. Muyzer, G., de Waal, E. C. and Uitterlinden, A. G. 1993. Profiling of complex
491 polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ.
493 31. Nakamura, S., Kondo, N., Yamaguchi, Y., Hashiguchi, M., Tanabe, K., Ushiroda, C.,
494 Kawahashi-Tokuhisa, M., Yui, K., Miyakoda, M. and Oku, T. 2014. Daily feeding
497 32. Oku, T., Nakamura, M., Hashiguchi-Ishiguro, M., Tanabe, K. and Nakamura, S.
498 2009. Bioavailability and Laxative Threshold of 1-kestose in Human Adults. Dyn
500 33. Ose, R., Hirano, K., Maeno, S., Nakagawa, J., Salminen, S., Tochio, T. and Endo, A.
502 oligosaccharides: Novel means for microbiota modulation? Anaerobe. 51: 110-119.
21
503 34. Reagan-Shaw, S., Nihal, M. and Ahmad, N. 2008. Dose translation from animal to
505 35. Ritchie, L. E., Steiner, J. M. and Suchodolski, J. S. 2008. Assessment of microbial
506 diversity along the feline intestinal tract using 16S rRNA gene analysis. FEMS.
508 36. Rossi, M., Corradini, C., Amaretti, A., Nicolini, M., Pompei, A. and Zanoni, S.
510 bifidobacteria: a comparative study of pure and fecal cultures. Appl. Environ.
512 37. Sommer, F., Anderson, J. M., Bharti, R., Raes, J. and Rosenstiel, P. 2017. The
513 resilience of the intestinal microbiota influences health and disease. Nat. Rev.
515 38. Song, Y., Liu, C. and Finegold, S. M. 2004. Real-time PCR quantitation of
516 clostridia in feces of autistic children. Appl. Environ. Microbiol. 70: 6459–6465.
517 39. Songjinda, P., Nakayama, J., Tateyama, A., Tanaka, S., Tsubouchi, M., Kiyohara, C.,
519 microbiota between allergic and non-allergic infants: A Pilot Study in Japan. Biosci.
521 40. Souza, D. D. S., Tahan, S., Weber, T. K., Araujo-Filho, H. B. and de Morais, M. B.
525 41. Suchodolski, J. S., Foster, M. L., Sohail, M. U., Leutenegger, C., Queen, E. V.,
526 Steiner, J. M. and Marks, S. L. 2005. The Fecal Microbiome in Cats with Diarrhea.
22
527 PLOS ONE. 10: e0127378.
528 42. Suzuki, N., Aiba, Y., Hiroyuki, T., Fukumori, Y. and Koga, Y. 2006. Superiority of
532 43. Takahashi, S., Tomita, J., Nishioka, K., Hisada, T. and Nishijima, M. 2014.
534 Bacteria and Archaea using next-generation sequencing. PLOS ONE. 9: e105592.
535 44. Takahashi, S., Yoshida, Y., Nakanishi, N., Tsukahara, T. and Ushida, K. 2008.
539 45. Tochio, T., Kitaura, Y., Nakamura, S., Sugawa, C., Takahashi, M., Endo, A. and
541 of 1-1-kestose results in a marked increase in the cecal butyrate content in rats.
543 46. Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y. Y., Keilbaugh, S. A.,
544 Bewtra, M., Knights, D., Walters, W. A., Knight, R., Sinha, R., Gilroy, E., Gupta, K.,
545 Baldassano, R., Nessel, L., Li, H., Bushman, F. D. and Lewis, J. D. 2011. Linking
546 long-term dietary patterns with gut microbial enterotypes. Science. 334: 105-108.
547 47. Yoshida, Y., Tsukahara, T. and Ushida, K. 2009. Oral administration of
548 Lactobacillus plantarum Lq80 and Megasphaera elsdenii iNP-001 induces efficient
549 recovery from mucosal atrophy in the small and the large intestines of weaning
23
494 FIGURE LGENDS
495
497 The mean abundance of the top 34 taxa, with values of 0.1% or higher during the study period,
498 in all samples at each time point (0, 4, 8, and 10 weeks). The group in which the abundance of the
499 genus Lactobacillus at the study initiation was the highest was designated as Group A (GA) and
500 the group in which the abundance of the genus Blautia was the highest with few Lactobacillus was
502
22
503
505 A plot of the first primary component (PC1) on the horizontal axis and the second primary
506 component (PC2) on the vertical axis, and each plot represents the microbiota structure of
507 individual samples. Plots were differently colored as follows: 0 weeks, blue; 4 weeks, red; 8 weeks,
508 green; and 10 weeks, purple. The number (1-6) beside the symbol indicates the ID numbers of cats.
509 Circles and diamonds represent group A (GA) and group B (GB) samples, respectively.
510
23
511
513 Green circles and orange diamonds represent group A (GA) and group B (GB) samples,
514 respectively. The short horizontal bars indicate the median. The black bars indicate the median of
515 all samples (GA+GB). To distinguish the 1-kestose administration period (0-8 weeks) and 2 weeks
516 after completion (10 weeks), a vertical broken line was added to the graph. The week in which a
517 slight difference was noted (p<0.1) in the statistical analysis is indicated by “*”.
518
24
519
521 The measurement of SCFA was performed using samples from group A (GA), group B (GB),
522 and both groups. The 1-kestose administration period (0 – 8 weeks) is indicated by the following
523 colors: GA, green; GB, orange; All, gray. The follow-up period is shown with white. Values are
524 presented by AVE±SE. In a statistical analysis of each week versus 0 weeks, the week at which a
526
25
Table 1. Profiles of cats used in the present study
a) b) c)
ID No Strain Sex Age (year) Body weight (kg) BCS Group
1 Narc:Catus M 10 3.76 3 A
2 Narc:Catus M 10 2.97 3 A
3 Narc:Catus F 12 2.31 3 B
4 Narc:Catus M 13 3.02 3 B
5 Narc:Catus F 13 2.56 3 B
6 NIBS F 10 3.53 3 B
a) M, male; F, female
b) Body condition score (BCS); assessed on a 5-point scale (1, very thin; 2, thin; 3,
ideal; 4, overweight; 5, obese)
c) Group; Grouping was performed according to the type of intestinal microbiota
527 composition, as shown in Figure 1.
528
26
Table 2. List of primers used for real-time PCR
341f CCTACGGGAGGCAGCAG
All Bacteria
534r ATTACCGCGGCTGCTGG
BifiLM26F GATTCTGGCTCAGGATGAACGC
Bifidobacterium spp.
Bif228R CTGATAGGACGCGACCCCAT
LactoR'F CACAATGGACGMAAGTCTGATG
Lactobacillus spp.
LBFR CGCCACTGGTGTTCTTCCAT
CXIV-F1 GAWGAAGTATYTCGGTATGT
Clostridium cluster XIV
CXIV-R2 CTACGCWCCCTTTACAC
Cperf 165F CGCATAACGTTGAAAGATGG
Clostridium perfringens
529 Cperf269R CCTTGGTAGGCCGTTACCC
530
27
Table 3. Changes in the abundance of taxa exhibiting a slight increase in both GA and GB
Average abundance (% ) (Minimum% - Maximum%)
Genus 0 weeks 4 weeks 8 weeks 10 weeks
11.9 a) 14.4 9.8 10.6
Lactobacillus b)
( 0.0 - 43.2 ) ( 0.1 - 48.3 ) ( 0.1 - 39.5 ) ( 0.0 - 52.7 )
2.4 5.9 6.5 0.8
Bifidoabcterium
( 0.2 - 8.1 ) ( 0.2 - 26.9 ) ( 1.3 - 20.6 ) ( 0.1 - 3.5 )
2.9 4.3* 5.9* 1.1
Megasphaera
( 0.1 - 9.4 ) ( 0.6 - 11.3 ) ( 2.3 - 12.0 ) ( 0.0 - 5.4 )
9.4 11.3 13.5 7.6
Collinsella
( 7.1 - 12.6 ) ( 6.8 - 18.4 ) ( 7.7 - 21.9 ) ( 3.97 - 13.7 )
a) Average
b) Minimum-Maximum
531 *p<0.1 (versus 0 weeks)
532
28
533
535
29
Supplemental Table 1. The hematology values of cats
Standard ID
Parameter 0 weeks 4 weeks 8 weeks 10 weeks Group
value No.
1 62 65 59 70
GA
2 101 92 96 80
2 3 68 57 79 75
White blood cells (10 /μl ) 55-195
4 89 88 81 106
GB
5 93 92 87 77
6 99 81 85 135
1 936 942 970 950
GA
2 1038 1027 1124 1077
3 874 769 770 742
Red blood cells (×104/μl ) 500-1000 4 958 841 860 826
GB
5 782 802 842 702
6 995 902 935 910
1 12.1 12.0 12.4 11.6
GA
2 14.0 13.4 14.4 13.6
3 12.6 11.2 10.7 9.6
Hemoglobin (g/dl ) 8.0-15.0
4 12.5 10.9 11.4 10.7
GB
5 11.3 11.9 12.1 9.8
6 14.1 13.5 14.1 13.2
1 36.2 36.4 37.6 35.0
GA
2 42.5 42.8 45.6 41.9
3 40.4 35.8 33.3 30.1
Hematocrit (%) 24.0-45.0
4 37.7 33.6 34.9 32.6
GB
5 39.3 40.9 41.7 34.3
6 43.7 41.7 44.6 41.1
1 24.8 19.1 19.2 18.7
GA
2 36.0 23.3 17.2 18.1
3 16.0 ND 17.8 18.1
Platelets (×104/μl ) 30.0-80.0
4 32.3 30.5 29.3 26.8
GB
5 28.9 17.7 23.0 31.7
6 35.8 25.3 16.2 19.9
536 ND, not detected
537
538
30
Supplemental table 2-1. The blood chemistry values of the cats
Standard ID
Parameter 0 weeks 4 weeks 8 weeks 10 weeks Group
value No.
1 12 14 13 16
GA
2 17 21 16 18
3 30 27 34 27
Triglyceride (mg/dl ) 14-120
4 21 22 29 30
GB
5 14 16 14 20
6 16 18 16 16
1 103 102 110 116
GA
2 102 98 105 116
3 147 130 152 151
Total cholesterol (mg/dl ) 98-264
4 146 134 150 157
GB
5 96 96 103 114
6 80 76 81 89
1 86 83 95 85
GA
2 89 125 116 134
3 161 119 82 263
Blood glucose (mg/dl ) 58-132
4 86 98 94 130
GB
5 92 98 81 198
6 71 95 88 83
1 11 13 10 19
GA
2 12 9 7 7
3 134 53 69 88
GOT (IU/l ) 6-48
4 22 21 24 21
GB
5 29 30 29 32
6 16 15 21 16
1 40 54 49 57
GA
2 46 44 37 38
3 240 178 227 187
GPT (IU/l ) 20-122
4 44 45 54 43
GB
5 88 81 90 84
6 58 75 84 69
1 1 1 1 1
GA
2 1 1 1 1
3 1 1 1 1
γ-GTP (IU/l ) 0-2
4 1 1 1 1
GB
5 1 1 1 1
6 1 1 1 1
1 0.0 0.0 0.1 0.0
GA
2 0.0 0.0 0.0 0.0
3 0.0 0.0 0.0 0.0
Bilirubin (mg/dl ) 0.0-0.1
4 0.0 0.0 0.0 0.0
GB
5 0.0 0.0 0.0 0.0
6 0.0 0.0 0.0 0.0
1 7.1 7.1 7.6 7.6
GA
2 6.4 6.4 6.1 6.4
3 6.6 6.4 7.3 6.4
Total protein (g/dl ) 6.1-8.4
4 7.4 7.3 7.7 7.3
GB
5 6.2 6.3 6.7 6.2
6 6.9 7.0 7.4 7.1
1 3.4 3.4 3.6 3.6
GA
2 3.3 3.3 3.2 3.4
3 3.4 3.3 3.8 3.2
Albumin (g/dl ) 2.9-4.3
4 3.4 3.4 3.5 3.4
GB
5 3.3 3.4 3.6 3.3
539 6 3.5 3.5 3.7 3.5
31
540
541
32
Supplemental table 2-2. The blood chemistry values of the cats
Standard ID
Parameter 0 weeks 4 weeks 8 weeks 10 weeks Group
value No.
1 61 75 92 90
GA
2 85 142 123 133
3 81 75 82 92
ALP (IU/l ) 30-228
4 71 61 67 71
GB
5 66 71 72 79
6 36 50 42 39
1 28 25 27 28
GA
2 18 14 19 18
3 32 25 37 31
Urea nitrogen (mg/dl ) 17-40
4 24 24 26 25
GB
5 27 25 29 27
6 24 23 26 24
1 1.2 1.2 1.2 1.3
GA
2 0.7 0.6 0.7 0.7
0.8-2.2 3 1.3 1.2 1.3 1.3
Creatinine (mg/dl )
4 1.0 1.0 1.0 1.1
GB
5 1.3 1.2 1.1 1.2
6 1.3 1.2 1.1 1.2
1 154 153 153 156
GA
2 153 154 154 159
3 155 156 157 152
Na (mmol/l ) 148-155
4 153 153 153 151
GB
5 156 154 158 154
6 156 156 159 156
1 4.4 4.3 3.9 4.6
GA
2 4.6 4.2 4.1 4.2
3 4.2 3.7 4.5 4.5
K (mmol/l ) 3.5-5.2
4 4.6 4.5 4.4 4.7
GB
5 4.8 4.4 4.8 4.1
6 4.2 3.8 4.5 3.8
1 122 120 121 124
GA
2 122 120 121 125
3 123 119 123 122
Cl (mmol/l ) 115-124
4 123 120 122 123
GB
5 123 123 126 124
6 124 123 125 125
1 2.2 2.2 2.3 2.2
GA
2 2.3 2.4 2.3 2.4
3 1.9 1.9 2.0 2.0
Mg (mg/dl ) 2.2-2.9
4 2.3 2.3 2.4 2.3
GB
5 2.2 2.2 2.3 2.2
6 2.4 2.3 2.5 2.3
1 9.1 8.8 9.0 8.9
GA
2 8.9 8.8 8.9 9.0
3 9.3 9.5 10.4 8.7
Ca (mg/dl ) 9.0-11.2
4 9.2 9.2 9.2 9.0
GB
5 9.4 10.3 10.0 9.0
6 10.0 9.9 10.7 9.8
1 4.7 4.6 4.9 4.9
GA
2 4.3 3.7 4.4 4.6
3 5.4 4.4 5.9 4.4
P (mg/dl ) 2.6-6.2
4 4.1 4.3 4.2 4.6
GB
5 4.0 5.7 5.3 3.9
542 6 5.1 4.7 4.9 4.9
33
Supplemental table 3. Intestinal microbiota composition analysis at the phylum level in GA
Average abundance (%) (Minimum% - Max%)
Phylum
0 weeks 4 weeks 8 weeks 10 weeks
62.43 63.41 58.50 62.19
Firmicutes
( 57.52 - 67.33 ) ( 60.16 - 66.66 ) ( 45.19 - 71.82 ) ( 43.52 - 80.86 )
8.13 10.53 16.62 8.12
Actinobacteria
( 7.74 - 8.52 ) ( 8.73 - 12.32 ) ( 11.13 - 22.12 ) ( 6.99 - 9.26 )
9.08 5.32 3.02 9.02
Bacteroidetes
( 4.97 - 13.19 ) ( 5.09 - 5.55 ) ( 2.70 - 3.33 ) ( 1.55 - 16.49 )
0.56 0.43 0.22 1.01
Proteobacteria
( 0.36 - 0.77 ) ( 0.32 - 0.54 ) ( 0.21 - 0.22 ) ( 0.08 - 1.95 )
0.18 0.01 0.02 0.17
Fusobacteria
( 0.04 - 0.31 ) ( 0.01 - 0.02 ) ( 0.01 - 0.02 ) ( 0.03 - 0.31 )
0.02 0.01 0.02 0.03
Verrucomicrobia
543 ( 0.02 - 0.02 ) ( 0.01 - 0.01 ) ( 0.01 - 0.03 ) ( 0.02 - 0.04 )
544
545
34
Supplemental table 4. Intestinal microbiota composition analysis at the phylum level in GB
Average abundance (%) (Minimum% - Max%)
Phylum
0 weeks 4 weeks 8 weeks 10 weeks
45.32 37.99 39.68 42.42
Firmicutes
( 43.33 - 47.57 ) ( 32.20 - 47.30 ) ( 34.04 - 45.65 ) ( 35.26 - 48.40 )
14.80 21.17 22.58 9.57
Actinobacteria
( 9.61 - 21.46 ) ( 9.16 - 46.00 ) ( 11.77 - 34.72 ) ( 4.50 - 19.36 )
9.19 12.29 9.65 14.98
Bacteroidetes
( 6.26 - 14.68 ) ( 3.94 - 17.27 ) ( 5.95 - 12.48 ) ( 6.72 - 20.21 )
0.47 0.92 0.70 1.08
Proteobacteria
( 0.25 - 0.72 ) ( 0.24 - 1.28 ) ( 0.22 - 1.12 ) ( 0.38 - 1.48 )
0.13 0.30 0.17 0.48
Fusobacteria
( 0.03 - 0.31 ) ( 0.04 - 0.47 ) ( 0.04 - 0.31 ) ( 0.06 - 0.64 )
0.07 0.04 0.04 0.06
Verrucomicrobia
546 ( 0.03 - 0.16 ) ( 0.02 - 0.06 ) ( 0.02 - 0.04 ) ( 0.03 - 0.12 )
547
548
35
Supplemental table 5-1. Intestinal microbiota composition analysis at the genus level in GA
Average abundance (%) (Minimum% - Max%)
Genus
0 weeks 4 weeks 8 weeks 10 weeks
35.44 38.37 28.59 31.69
Lactobacillus
( 27.67 - 43.21 ) ( 28.48 - 48.25 ) ( 17.67 - 39.51 ) ( 10.67 - 52.72 )
11.82 8.84 8.74 14.26
Blautia
( 11.60 - 12.05 ) ( 6.86 - 10.81 ) ( 7.14 - 10.35 ) ( 11.77 - 16.76 )
7.54 7.87 9.49 7.36
Collinsella
( 7.08 - 8.00 ) ( 6.83 - 8.91 ) ( 7.68 - 11.29 ) ( 6.46 - 8.26 )
8.57 5.06 2.77 8.18
Prevotella
( 4.11 - 13.03 ) ( 4.80 - 5.31 ) ( 2.51 - 3.04 ) ( 1.49 - 14.88 )
5.98 5.00 4.45 8.08
Clostridium hiranonis
( 5.81 - 6.16 ) ( 4.80 - 5.20 ) ( 3.96 - 4.95 ) ( 7.15 - 9.02 )
5.21 7.12 5.50 3.00
Megasphaera
( 1.01 - 9.40 ) ( 2.98 - 11.27 ) ( 2.27 - 8.74 ) ( 0.63 - 5.36 )
0.34 2.4 6.8 0.4
Bifidobacterium
( 0.31 - 0.38 ) ( 1.59 - 3.12 ) ( 3.05 - 10.55 ) ( 0.27 - 0.51 )
0.05 0.07 7.35 0.07
Streptococcus
( 0.05 - 0.06 ) ( 0.04 - 0.10 ) ( 0.27 - 14.43 ) ( 0.06 - 0.08 )
0.00 0.00 0.00 0.06
Turicibacter
( 0.00 - 0.00 ) ( 0.00 - 0.00 ) ( 0.00 - 0.00 ) ( 0.00 - 0.11 )
0.53 0.55 0.50 0.56
Lachnoclostridium
( 0.27 - 0.79 ) ( 0.48 - 0.63 ) ( 0.36 - 0.63 ) ( 0.26 - 0.87 )
0.93 0.46 0.32 1.08
Faecalibacterium
( 0.91 - 0.96 ) ( 0.44 - 0.49 ) ( 0.17 - 0.47 ) ( 0.40 - 1.75 )
0.51 0.34 0.45 1.17
Ruminococcus
( 0.32 - 0.71 ) ( 0.26 - 0.41 ) ( 0.24 - 0.66 ) ( 0.59 - 1.74 )
0.51 0.31 0.57 0.20
Subdoligranulum
( 0.23 - 0.78 ) ( 0.18 - 0.43 ) ( 0.40 - 0.74 ) ( 0.12 - 0.27 )
0.25 0.30 0.11 0.10
Megamonas
( 0.12 - 0.37 ) ( 0.26 - 0.35 ) ( 0.03 - 0.19 ) ( 0.02 - 0.18 )
0.01 0.15 0.07 0.01
Paeniclostridium
( 0.00 - 0.02 ) ( 0.13 - 0.16 ) ( 0.03 - 0.11 ) ( 0.00 - 0.02 )
0.17 0.17 0.24 0.24
Slackia
( 0.14 - 0.19 ) ( 0.16 - 0.19 ) ( 0.19 - 0.28 ) ( 0.18 - 0.30 )
0.18 0.10 0.12 0.36
Tyzzerella
549 ( 0.03 - 0.33 ) ( 0.04 - 0.15 ) ( 0.00 - 0.24 ) ( 0.03 - 0.69 )
550
551
36
Supplemental table 5-2. Intestinal microbiota composition analysis at the genus level in GA
Average abundance (%) (Minimum% - Max%)
Genus
0 weeks 4 weeks 8 weeks 10 weeks
0.33 0.13 0.06 0.56
Bacteroides
( 0.05 - 0.60 ) ( 0.12 - 0.14 ) ( 0.06 - 0.07 ) ( 0.01 - 1.11 )
0.22 0.15 0.08 0.42
Desulfovibrio
( 0.09 - 0.35 ) ( 0.15 - 0.15 ) ( 0.07 - 0.10 ) ( 0.04 - 0.80 )
0.14 0.10 0.02 0.46
Enterococcus
( 0.09 - 0.18 ) ( 0.03 - 0.18 ) ( 0.02 - 0.03 ) ( 0.07 - 0.86 )
0.03 0.48 0.21 0.36
Clostridium
( 0.02 - 0.04 ) ( 0.06 - 0.91 ) ( 0.15 - 0.27 ) ( 0.02 - 0.69 )
0.12 0.09 0.08 0.09
Parabacteroides
( 0.07 - 0.16 ) ( 0.03 - 0.16 ) ( 0.03 - 0.13 ) ( 0.04 - 0.13 )
0.18 0.01 0.01 0.16
Fusobacterium
( 0.04 - 0.31 ) ( 0.01 - 0.01 ) ( 0.01 - 0.02 ) ( 0.03 - 0.29 )
0.11 0.17 0.35 0.05
Lactonifactor
( 0.03 - 0.19 ) ( 0.09 - 0.26 ) ( 0.21 - 0.48 ) ( 0.03 - 0.06 )
0.02 0.02 0.03 0.15
Paraprevotella
( 0.01 - 0.03 ) ( 0.00 - 0.05 ) ( 0.01 - 0.06 ) ( 0.00 - 0.29 )
0.07 0.08 0.05 0.35
Anaerobiospirillum
( 0.00 - 0.14 ) ( 0.00 - 0.15 ) ( 0.00 - 0.09 ) ( 0.00 - 0.70 )
0.18 0.15 0.11 0.11
Butyricicoccus
( 0.13 - 0.23 ) ( 0.12 - 0.18 ) ( 0.09 - 0.13 ) ( 0.04 - 0.18 )
0.16 0.15 0.09 0.13
Catenibacterium
( 0.07 - 0.25 ) ( 0.08 - 0.21 ) ( 0.03 - 0.15 ) ( 0.08 - 0.19 )
0.23 0.12 0.05 0.18
Sutterella
( 0.22 - 0.24 ) ( 0.09 - 0.15 ) ( 0.03 - 0.08 ) ( 0.01 - 0.35 )
0.03 0.02 0.05 0.04
Alistipes
( 0.01 - 0.06 ) ( 0.02 - 0.02 ) ( 0.03 - 0.07 ) ( 0.00 - 0.07 )
0.03 0.05 0.05 0.06
Adlercreutzia
( 0.03 - 0.04 ) ( 0.04 - 0.07 ) ( 0.02 - 0.07 ) ( 0.03 - 0.08 )
0.10 0.18 0.18 0.12
Allisonella
( 0.02 - 0.19 ) ( 0.15 - 0.21 ) ( 0.02 - 0.35 ) ( 0.06 - 0.18 )
0.02 0.03 0.02 0.03
Actinomyces
( 0.02 - 0.02 ) ( 0.02 - 0.04 ) ( 0.02 - 0.03 ) ( 0.02 - 0.04 )
0.01 0.23 0.51 0.00
Acidaminococcus
552 ( 0.00 - 0.02 ) ( 0.00 - 0.46 ) ( 0.00 - 1.03 ) ( 0.00 - 0.00 )
553
554
37
Supplemental table 6-1. Intestinal micobiota composition analysis at the genus level in GB
Average abundance (%) (Minimum% - Max%)
Genus
0 weeks 4 weeks 8 weeks 10 weeks
0.09 2.44 0.43 0.06
Lactobacillus
( 0.04 - 0.20 ) ( 0.09 - 8.58 ) ( 0.10 - 0.89 ) ( 0.04 - 0.07 )
18.08 13.95 16.49 18.36
Blautia
( 14.06 - 22.05 ) ( 9.95 - 19.02 ) ( 10.73 - 19.3 ) ( 16.01 - 22.62 )
10.39 12.96 15.55 7.67
Collinsella
( 8.66 - 12.58 ) ( 7.78 - 18.44 ) ( 9.60 - 21.90 ) ( 3.97 - 13.72 )
8.04 11.24 8.68 13.67
Prevotella
( 4.981 - 13.55 ) ( 3.811 - 15.52 ) ( 5.605 - 11.01 ) ( 4.869 - 19.29 )
11.19 6.57 8.42 10.77
Clostiridum hiranonis
( 4.27 - 17.82 ) ( 3.03 - 8.87 ) ( 3.73 - 13.35 ) ( 8.94 - 11.99 )
1.69 2.96 6.13 0.21
Megasphaera
( 0.11 - 5.03 ) ( 0.631 - 5.642 ) ( 3.207 - 12.02 ) ( 0.014 - 0.569 )
3.38 7.60 6.38 1.00
Bifidobacterium
( 0.17 - 8.06 ) ( 0.16 - 26.85 ) ( 1.33 - 20.60 ) ( 0.07 - 3.54 )
0.24 3.93 1.65 4.12
Streptococcus
( 0.08 - 0.49 ) ( 0.07 - 15.35 ) ( 0.05 - 6.34 ) ( 0.11 - 15.94 )
7.30 2.08 0.57 2.63
Turicibacter
( 0.00 - 17.27 ) ( 0.00 - 8.18 ) ( 0.00 - 2.26 ) ( 0.00 - 10.51 )
1.42 0.93 0.82 1.05
Lachnoclostridium
( 1.20 - 1.68 ) ( 0.45 - 1.22 ) ( 0.38 - 1.03 ) ( 0.76 - 1.34 )
0.56 0.73 0.56 0.83
Faecalibacterium
( 0.16 - 1.17 ) ( 0.18 - 1.38 ) ( 0.08 - 1.15 ) ( 0.09 - 1.33 )
0.85 0.44 0.42 0.85
Ruminococcus
( 0.61 - 1.34 ) ( 0.34 - 0.60 ) ( 0.21 - 0.62 ) ( 0.58 - 1.05 )
1.11 0.38 0.53 0.26
Subdoligranulum
( 0.12 - 2.49 ) ( 0.10 - 0.89 ) ( 0.17 - 0.91 ) ( 0.07 - 0.71 )
0.04 1.66 1.40 0.06
Megamonas
( 0.01 - 0.07 ) ( 0.01 - 4.64 ) ( 0.19 - 3.66 ) ( 0.00 - 0.21 )
1.07 0.20 0.69 0.87
Paeniclostridium
( 0.36 - 1.85 ) ( 0.00 - 0.65 ) ( 0.25 - 1.30 ) ( 0.00 - 2.43 )
0.68 0.40 0.38 0.67
Slackia
( 0.48 - 0.85 ) ( 0.27 - 0.54 ) ( 0.24 - 0.47 ) ( 0.28 - 1.79 )
0.23 0.37 0.42 0.83
Tyzzerella
555 ( 0.14 - 0.40 ) ( 0.01 - 0.77 ) ( 0.01 - 1.04 ) ( 0.73 - 0.99 )
556
557
38
Supplemental table 6-2. Intestinal micobiota composition analysis at the genus level in GB
Average abundance (%) (Minimum% - Max%)
Genus
0 weeks 4 weeks 8 weeks 10 weeks
0.29 0.32 0.29 0.56
Bacteroides
( 0.23 - 0.39 ) ( 0.06 - 0.63 ) ( 0.07 - 0.51 ) ( 0.17 - 1.33 )
0.20 0.39 0.32 0.73
Desulfovibrio
( 0.11 - 0.43 ) ( 0.02 - 0.64 ) ( 0.08 - 0.61 ) ( 0.15 - 0.95 )
0.34 0.00 0.06 0.33
Enterococcus
( 0.03 - 1.02 ) ( 0.00 - 0.01 ) ( 0.01 - 0.17 ) ( 0.03 - 0.57 )
0.31 0.15 0.20 0.20
Clostridium
( 0.01 - 0.67 ) ( 0.00 - 0.27 ) ( 0.02 - 0.40 ) ( 0.01 - 0.67 )
0.27 0.29 0.24 0.25
Parabacteroides
( 0.15 - 0.45 ) ( 0.02 - 0.52 ) ( 0.07 - 0.38 ) ( 0.16 - 0.36 )
0.12 0.29 0.16 0.48
Fusobacterium
( 0.03 - 0.30 ) ( 0.03 - 0.46 ) ( 0.04 - 0.31 ) ( 0.04 - 0.64 )
0.12 0.23 0.22 0.25
Lactonifactor
( 0.02 - 0.28 ) ( 0.02 - 0.71 ) ( 0.02 - 0.75 ) ( 0.02 - 0.89 )
0.23 0.24 0.27 0.34
Paraprevotella
( 0.09 - 0.54 ) ( 0.02 - 0.51 ) ( 0.12 - 0.64 ) ( 0.06 - 0.68 )
0.06 0.32 0.22 0.22
Anaerobiospirillum
( 0.01 - 0.13 ) ( 0.00 - 0.55 ) ( 0.00 - 0.46 ) ( 0.06 - 0.44 )
0.12 0.18 0.10 0.17
Butyricicoccus
( 0.03 - 0.26 ) ( 0.03 - 0.27 ) ( 0.07 - 0.12 ) ( 0.05 - 0.27 )
0.06 0.25 0.06 0.09
Catenibacterium
( 0.01 - 0.08 ) ( 0.08 - 0.47 ) ( 0.02 - 0.12 ) ( 0.01 - 0.12 )
0.05 0.12 0.08 0.03
Sutterella
( 0.02 - 0.07 ) ( 0.00 - 0.30 ) ( 0.00 - 0.20 ) ( 0.02 - 0.04 )
0.25 0.08 0.08 0.09
Alistipes
( 0.09 - 0.36 ) ( 0.01 - 0.16 ) ( 0.04 - 0.13 ) ( 0.03 - 0.19 )
0.13 0.11 0.11 0.13
Adlercreutzia
( 0.09 - 0.16 ) ( 0.05 - 0.18 ) ( 0.06 - 0.19 ) ( 0.11 - 0.15 )
0.02 0.09 0.12 0.04
Allisonella
( 0.00 - 0.03 ) ( 0.07 - 0.11 ) ( 0.01 - 0.21 ) ( 0.00 - 0.10 )
0.14 0.05 0.09 0.05
Actinomyces
( 0.09 - 0.23 ) ( 0.02 - 0.09 ) ( 0.05 - 0.15 ) ( 0.02 - 0.09 )
0.00 0.06 0.11 0.00
Acidaminococcus
558 ( 0.00 - 0.01 ) ( 0.00 - 0.23 ) ( 0.00 - 0.42 ) ( 0.00 - 0.00 )
559
39