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Download textbook Bio Inspired Computing Theories And Applications 11Th International Conference Bic Ta 2016 Xi An China October 28 30 2016 Revised Selected Papers Part I 1St Edition Maoguo Gong ebook all chapter pdf
Download textbook Bio Inspired Computing Theories And Applications 11Th International Conference Bic Ta 2016 Xi An China October 28 30 2016 Revised Selected Papers Part I 1St Edition Maoguo Gong ebook all chapter pdf
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Bio-inspired Computing –
Theories and Applications
11th International Conference, BIC-TA 2016
Xi'an, China, October 28–30, 2016
Revised Selected Papers, Part I
123
Communications
in Computer and Information Science 681
Commenced Publication in 2007
Founding and Former Series Editors:
Alfredo Cuzzocrea, Dominik Ślęzak, and Xiaokang Yang
Editorial Board
Simone Diniz Junqueira Barbosa
Pontifical Catholic University of Rio de Janeiro (PUC-Rio),
Rio de Janeiro, Brazil
Phoebe Chen
La Trobe University, Melbourne, Australia
Xiaoyong Du
Renmin University of China, Beijing, China
Joaquim Filipe
Polytechnic Institute of Setúbal, Setúbal, Portugal
Orhun Kara
TÜBİTAK BİLGEM and Middle East Technical University, Ankara, Turkey
Igor Kotenko
St. Petersburg Institute for Informatics and Automation of the Russian
Academy of Sciences, St. Petersburg, Russia
Ting Liu
Harbin Institute of Technology (HIT), Harbin, China
Krishna M. Sivalingam
Indian Institute of Technology Madras, Chennai, India
Takashi Washio
Osaka University, Osaka, Japan
More information about this series at http://www.springer.com/series/7899
Maoguo Gong Linqiang Pan
•
Bio-inspired Computing –
Theories and Applications
11th International Conference, BIC-TA 2016
Xi’an, China, October 28–30, 2016
Revised Selected Papers, Part I
123
Editors
Maoguo Gong Tao Song
Xidian University China University of Petroleum
Xi’an Qingdao
China China
Linqiang Pan and
Huazhong University of Science
and Technology Faculty of Engineering, Computing
Wuhan and Science
China Swinburne University of Technology
Sarawak Campus
Kuching
Malaysia
Gexiang Zhang
Southwest Jiaotong University
Chengdu
China
Bio-inspired computing is a field of study that abstracts computing ideas (data struc-
tures, operations with data, ways to control operations, computing models, etc.) from
living phenomena or biological systems such as evolution, cells, tissues, neural net-
works, immune system, and ant colonies. Bio-Inspired Computing: Theories and
Applications (BIC-TA) is a series of conferences that aims to bring together researchers
working in the main areas of natural computing inspired from biology, for presenting
their recent results, exchanging ideas, and cooperating in a friendly framework. The
conference has four main topics: evolutionary computing, neural computing, DNA
computing, and membrane computing.
Since 2006, the conference has taken place at Wuhan (2006), Zhengzhou (2007),
Adelaide (2008), Beijing (2009), Liverpool and Changsha (2010), Penang (2011),
Gwalior (2012), Anhui (2013), Wuhan (2014), and Anhui (2015). Following the
success of previous editions, the 11th International Conference on Bio-Inspired
Computing: Theories and Applications (BIC-TA 2016) was organized by Xidian
University, during October 28–30, 2016.
BIC-TA 2016 attracted a wide spectrum of interesting research papers on various
aspects of bio-inspired computing with a diverse range of theories and applications.
We received 343 submissions, of which 115 papers were selected for two volumes of
Communications in Computer and Information Science.
We gratefully thank Xidian University, Huazhong University of Science and
Technology, and Northwestern Polytechnical University for extensive assistance in
organizing the conference. We also thank Dr. Jiao Shi and all other volunteers, whose
efforts ensured the smooth running of the conference.
The editors warmly thank the Program Committee members for their prompt and
efficient support in reviewing the papers, and the authors of the submitted papers for
their interesting papers.
Special thanks are due to Springer for their skilled cooperation in the timely pro-
duction of these volumes.
Steering Committee
Guangzhao Cui Zhengzhou University of Light Industry, China
Kalyanmoy Deb Indian Institute of Technology Kanpur, India
Miki Hirabayashi National Institute of Information and Communications
Technology (NICT), Japan
Joshua Knowles University of Manchester, UK
Thom LaBean North Carolina State University, USA
Jiuyong Li University of South Australia, Australia
Kenli Li University of Hunan, China
Giancarlo Mauri Università di Milano-Bicocca, Italy
Yongli Mi Hong Kong University of Science and Technology,
Hong Kong, SAR China
Atulya K. Nagar Liverpool Hope University, UK
Linqiang Pan Huazhong University of Science and Technology, China
Gheorghe Păun Romanian Academy, Bucharest, Romania
Mario J. Pérez-Jiménez University of Seville, Spain
K.G. Subramanian Universiti Sains Malaysia, Malaysia
Robinson Thamburaj Madras Christian College, India
Jin Xu Peking University, China
Hao Yan Arizona State University, USA
Program Committee
Sponsors
Xidian University
Huazhong University of Science and Technology
Northwestern Polytechnical University
Contents – Part I
DNA Computing
Membrane Computing
Neural Computing
Machine Learning
Evolutionary Computing
Differential Evolution Algorithm with the Second Order Difference Vector . . . 219
Xinchao Zhao, Dongyue Liu, Xingquan Zuo, Huiping Liu, and Rui Li
Multi-objective Optimization
Applying K-means Clustering and Genetic Algorithm for Solving MTSP . . . . 278
Zhanqing Lu, Kai Zhang, Juanjuan He, and Yunyun Niu
Pattern Recognition
Others
1 Introduction
DNA computing [1–3] is an important research content in the crossing field of
computer science and biological science. It is a new and fast-developing direction
along with the successful completion of human genome project. In 1994, Adleman
implemented to solve Hamiltonian Path Problem that there are seven vertices
by the biological method according to the complementarity principle of DNA
molecular bases [4]. The birth of DNA computing marks the appearance of a
new computing mode and breaks the original calculation model. It opens up a
new path for solving various complicated problem.
The basic principle of DNA computing [5] is that DNA sequences are used
as a carrier of information coding, and the specific DNA sequences are used to
map the problem by the double helix of DNA molecules and the properties of
the complementary base pairing. Using enzymes as operator, the solution space
is generated by controllable biochemical reactions. Then, the solution results are
extracted by polymerase chain reaction PCR, aggregation, overlapping ampli-
fication technology POA, ultrasonic degradation, affinity chromatography, elec-
trophoresis, molecular and purification, separation of magnetic beads and other
modern molecular biological technology.
c Springer Nature Singapore Pte Ltd. 2016
M. Gong et al. (Eds.): BIC-TA 2016, Part I, CCIS 681, pp. 3–11, 2016.
DOI: 10.1007/978-981-10-3611-8 1
4 S. Zhou et al.
Two calculation parameters are connected by Operation Tile. In this paper, com-
pound logic operators contain XOR, NOR and NAND, therefore, Operation Tile
owns three types. Operation Tile also owns four stick ends, namely σLU , σLD ,
σRU and σRD . When bonding strength is greater than the given parameter, σLU
and σRD are used to connect two adjacent Operation Tiles. The front parameter
is transmitted by σLD , and the arithmetic is transmitted by σRU (Fig. 4).
End Tile marks the end of the operation and outputs the final result. End Tile
only owns two types. End Tile owns three stick ends, namely σLU , σLD and
σRD . σLU and σRD play an role in connecting End Tiles. σLD is used to receive
the final result of compound logic operators (Fig. 5).
6 Conclusions
In this paper, DNA self-assembly model of logic operators is designed. According
to the characteristic of the compound operators, we design five types of DNA
Tiles which meet the needs of computation, namely Initial Tile, Process Tile,
Operation Tile, End Tile and Boundary Tile. We demonstrate the process of self-
assembly by an instance. The computation time that the final result is gotten is
linear, and the model can greatly control the complexity of computation. How
to use membrane computing strategy, such as [14–18] to develop DNA based
computing models is a worthy research direction.
References
1. Rasmus, L., Matthew, R., Andrew, P.: A novel DNA computing based encryption
and decryption algorithm. Theor. Comput. Sci. 632, 43–73 (2016)
2. UbaidurRahman, N., Balamurugan, C., Mariappan, R.: A strand graph semantics
for DNA-based computation. Procedia Comput. Sci. 46, 463–475 (2015)
3. Ullah, A., D’Addona, D., Arai, N.: DNA based computing for understanding com-
plex shapes. Biosystems 117, 40–53 (2014)
4. Adleman, L.M.: Molecular computation of solutions to combinatorial problems.
Science 266(5187), 1021–1024 (1994)
5. Hossein, E., Majid, D.: Application of DNA computing in graph theory. Artif.
Intell. Rev. 38(3), 223–235 (2012)
6. Winfree, E., Liu, F., Wenzler, L., Seeman, N.: Design and self-assembly of two-
dimensional DNA crystals. Nature 394(6693), 539–544 (1998)
7. Mao, C.D., LaBean, T.H., Reif, J.H., Seeman, N.C.: Logical computation using
algorithmic self-assembly of DNA triple-crossover molecules. Nature 407, 493–496
(2000)
8. Zhao, J., Qian, L., Liu, Q., Zhang, Z., He, L.: DNA addition based on linear self-
assembly. Chin. Sci. Bull. 51(21), 2485–2489 (2006). (in Chinese)
9. Zhang, X.C., Wang, Y.F., Chen, Z.H.: Arithmetic computation using self-assembly
of DNA tiles: subtraction and division. Prog. Nat. Sci. 19(3), 377–388 (2009)
10. Fang, X., Lai, X.: DNA subtraction modular arithmetic based on linear self-
assembly. Chin. Sci. Bull. 55(10), 957–963 (2010). (in Chinese)
11. Zhang, C., Yang, J., Xu, J.: Molecular logic computing model based on self-
assembly of DNA nanoparticles. Chin. Sci. Bull. 56(33), 3566–3571 (2011)
12. Yu, Y., Lu, J., Wang, D., Pei, H., Fan, C.: DNA/RNA based logic gates and
computing. Chin. Sci. Bull. 58(2), 131–140 (2013). (in Chinese)
13. Bi, S., Yue, S., Wu, Q., Ye, J.: Initiator-catalyzed self-assembly of duplex-looped
DNA hairpin motif based on strand displacement reaction for logic operations and
amplified biosensing. Biosens. Bioelectron. 83, 281–286 (2016)
14. Song, T., Pan, L.: Spiking neural P systems with request rules. Neurocomputing
193(12), 193–200 (2016)
15. Song, T., Liu, X., Zhao, Y., Zhang, X.: Spiking neural P systems with white hole
neurons. IEEE Trans. Nanobiosci. (2016). doi:10.1109/TNB.2016.2598879
DNA Self-assembly Model to Solve Compound Logic Operators Problem 11
16. Song, T., Pan, Z., Wong, D.M., Wang, X.: Design of logic gates using spiking
neural P systems with homogeneous neurons and astrocytes-like control. Inf. Sci.
372, 380–391 (2016)
17. Wang, X., Song, T., Gong, F., Pan, Z.: On the computational power of spiking
neural P systems with self-organization. Scientific Reports. doi:10.1038/srep27624
18. Shi, X., Wu, X., Song, T., Li, X.: Construction of DNA nanotubes with controllable
diameters and patterns by using hierarchical DNA sub-tiles. Nanoscale. doi:10.
1039/C6NR02695H
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(3.) Brooklyn.
Work on the great undertaking was begun promptly, and had made
great progress within the first twelve months.
An Act for the regulation of the liquor traffic, which was and
is the subject of much controversy, was passed in March, 1896,
by the Legislature of the State of New York. From its author,
Senator John Raines, it has borne the name of the Raines Law.
It heavily increased the tax on the selling of liquor, raising
it to $800 on common "saloons" in the city of New York; to $650
in Brooklyn; to $500 in other cities having more than 50,000
and not more than 500,000 inhabitants; and to rates in lesser
cities and towns which ranged from 8100 to $350. It forbade
the licensing of any liquor shop within 200 feet of a
schoolhouse or a church, and also forbade the opening of any
new shop of that character in a residence district without
consent of two-thirds of the property owners. It prohibited
the sale of liquor on Sundays, except in hotels and clubs; but
this provision furnished a means of evasion which was speedily
brought into use. "Raines hotels" and "Raines Clubs," as they
were called, sprang into existence everywhere, sufficiently
answering the requirements of the law to escape its penalties.
These and other defects were considerably remedied by
amendments of the Act in April, 1897. It survived a powerful
attack in the Legislature at that time, the whole strength of
the leading cities in the State being brought against the law.
The country districts were generally united in supporting it,
partly on principle, and partly because of the extent to which
it lightened the burdens of taxation. By apportioning
two-thirds of the enormous revenue raised under the Act to the
towns, counties and cities in which it is collected, and
one-third to the state treasury, the Raines Law fortified
itself strongly in more than the moral sentiment of the
people. Under the Raines Law all local excise boards are
abolished, and the whole licensing and regulating of the
liquor traffic is placed under the supervision of a State
commissioner.
{326}
Within a few days, the desired bill was passed by both Houses
of the Legislature, signed by the Governor and became a law.
The public franchises to which it relates are defined in its
first section, as follows:
{328}
"As far as I can make out, too, without visiting the country,
there is as yet no sign of reaction against this minute
paternal care of the laborer. The tendency to use the powers
of the government chiefly for the promotion of the comfort of
the working classes, whether in the matter of land settlement,
education, or employment, seems to undergo no diminution. The
only thing which has ceased, or slackened, is the borrowing of
money for improvements. The results of this borrowing have
been so disastrous that the present generation, at least, will
hardly try that experiment again."
E. L. Godkin,
The Australian Democracy
(Atlantic Monthly, March, 1898).
NEW ZEALAND:
Labor Laws.
Compulsory industrial arbitration.
M. Davitt,
Life and Progress in Australasia,
chapter 68.