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BIOMIMETIC
MICROENGINEERING
Edited by
Edited by
Hyun Jung Kim
CRC Press
Taylor & Francis Group
6000 Broken Sound Parkway NW, Suite 300
Boca Raton, FL 33487-2742
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v
vi Contents
Chapter 11 In Vitro Alzheimer’s Disease Modeling Using Stem Cells ............... 263
Hyun-Ji Park, Song Ih Ahn, Jeong-Kee Yoon,
Hyunjung Lee, and YongTae Kim
ix
Editor
Hyun Jung Kim is an assistant professor in the Department of Biomedical
Engineering at The University of Texas at Austin. After receiving his Ph.D. degree at
Yonsei University in the Republic of Korea, he did extensive postdoctoral research at
both the University of Chicago and the Wyss Institute at Harvard University. These
efforts resulted in cutting-edge breakthroughs in synthetic microbial community
research and organomimetic human Gut-on-a-Chip microsystem. His research
on Gut-on-a-Chip technology leads to the creation of a microfluidic device that
mimics the physiology and pathology of the living human intestine. Since 2015,
he has explored novel human host-microbiome ecosystems to discover the disease
mechanism and new therapeutics in inflammatory bowel disease and colorectal
cancer at UT Austin. In collaboration with clinicians, his lab is currently developing
disease-oriented, patient-specific models for the advancement in pharmaceutical
and clinical fields.
xi
Contributors
Song Ih Ahn Seung-Woo Cho
George W. Woodruff School of Department of Biotechnology
Mechanical Engineering Yonsei University
Georgia Institute of Technology Seoul, South Korea
Atlanta, Georgia
Yi Sun Choi
Philippa Pribul Allen Department of Biotechnology
GlaxoSmithKline Yonsei University
Collegeville, Pennsylvania Seoul, South Korea
xiii
xiv Contributors
CONTENTS
1.1 Introduction .......................................................................................................4
1.2 Methods for Studying Substrate-Mediated Mechanical Cues........................... 4
1.2.1 ECM-Mediated Mechanical Cues Are Important in
Physiological and Pathological Processes............................................4
1.2.2 Substrate
Stiffness .................................................................................6
1.2.2.1 Traditional Hydrogel System ..................................................6
1.2.2.2 Photoactivated Hydrogel Systems ...........................................7
1.2.3 Micro- and Nanopatterned Systems ......................................................9
1.2.3.1 Micropost Arrays .................................................................... 9
1.2.3.2 Grooves ................................................................................. 11
1.2.3.3 Other Micropatterning Types ............................................... 12
1.3 Micromechanical Devices for Studying Mechanical Stretch .......................... 13
1.3.1 Mechanical Stretch as a Biological Regulator ..................................... 13
1.3.2 Clamp-Based
Stretch ........................................................................... 14
1.3.3 Piston-Based Stretch ............................................................................ 17
1.3.4 Pressure-Based Stretch ........................................................................ 19
1.3.5 Devices Using Other Mechanisms to Apply Mechanical Stretch ....... 21
1.4 Microfluidic and Similar Devices for Studying Shear Stress .......................... 22
1.4.1 Microfluidics
........................................................................................25
1.4.2 Mesofluidic
Systems ............................................................................ 29
1.5 Conclusion
....................................................................................................... 30
References ................................................................................................................. 30
3
4 Biomimetic Microengineering
1.1 INTRODUCTION
Cells in the body are exposed to mechanical forces through a variety of processes.
These range from the motions of the body through the contraction of muscles and
rotation around the joints to fluidic shear stresses from the flow of blood, lymph, or
other body fluids. Mechanobiological processes are being increasingly recognized to
be powerful regulators of many organ systems and in pathophysiological processes
including those involved in cardiovascular disease (Koskinas et al. 2009), cancer
(Jain, Martin, and Stylianopoulos 2014), and stem cell biology (Henderson et al.
2017). On a fundamental scale, forces can alter the rate and equilibrium of biochemi-
cal reactions, leading to a broad shift in biological processes that is not easily repro-
ducible by other means. Thus, many processes that are not obviously affected by
macroscopic level forces also have a mechanobiological component. Some examples
of these include the activation of T cell receptors (Kim, Shin et al. 2012), histone
binding to DNA (Miroshnikova, Nava, and Wickstrom 2017), or receptor binding
kinetics (Walton, Lee, and Van Vliet 2008).
A major goal of biomimetic systems is to accurately reproduce important aspects
of the target systems biology on an in vitro system. Some body systems inherently
interact with and generate mechanical forces as part of their normal function. The
cardiovascular system is a prime example of this in which the physical pumping of
the heart moves blood through the elastic arteries of the body. In both the heart and
the blood vessels, mechanical forces provide signals for homeostasis or adaptation
and are a key part of reproducing the biology ex vivo to model disease or mimic
normal physiology.
In this chapter, we will review the methods and techniques for incorporating
mechanical stimuli into biomimetic models. We will first examine using patterning
and microfabrication techniques to mimic the passive mechanical aspects of an organ
system. These include stimuli such as extracellular matrix (ECM) stiffness, pattern-
ing of attachment sites or micro- and nanotopographical queues that arise from the
fibrillar structure of the ECM. We will next examine methods for simulating mechan-
ical stretch in biomimetic systems to simulate biological processes like arterial stretch
due to the cardiac cycle, lung expansion during breathing, or peristalsis of the intes-
tine. Finally, we will examine systems to simulate flow in biomimetic systems.
FIGURE 1.1 Human tissue and organs under mechanical stimuli (arrows show force
directions) and diseases associated with mechanical forces (Giulitti et al. 2016).
and function (Vogel and Sheetz 2006). Since mechanotransduction is present on all
cells, mechanical changes that cells perceive from ECM may impair cellular pro-
cesses, causing cellular dysfunction and diseases.
Recent investigations have shown the mechanism of common forces, stresses,
loads, and deformations on disease that has a component regulated by mechani-
cal forces, including vascular calcification, heart failure, chronic intestinal
pseudo-obstruction, and muscular dystrophies among others diseases (Figure 1.1)
(Giulitti et al. 2016). Mimicking physiological mechanics exerted from ECM is
needed for the creation of accurate biomimetic assays.
The ECM is mainly composed of collagen fibers, proteoglycans, glycoproteins,
and other matrix proteins, that bind to integrin receptors on cell surface to form
cell–matrix attachments. Most human cells are adherent and must be anchored to
an appropriate ECM to survive. The integrin family of receptors are capable of
mediating signals from the ECM to regulate cellular behaviors, including prolifera-
tion, differentiation, and apoptosis (Giancotti and Ruoslahti 1999). As integrins bind
6 Biomimetic Microengineering
to ECM and become activated, they become clustered and, in turn, interact with
intracellular signaling molecules including focal adhesion kinase and Src. These
signaling molecules lead to the formation of a focal adhesion (FA) which provides
a connection to the actin cytoskeleton via linker proteins including talin, vinculin,
filamin, and α-actinin (Humphrey, Dufresne, and Schwartz 2014). The activation
and clustering of integrins also associated with RhoA activation, MAPK/ERK path-
way signaling (Shyy and Chien 2002), and signaling through the Hippo signaling
pathway (Dupont et al. 2011). Therefore, the mechanical properties of the matrix
that cells adhere to can influence these integrin-elicited signaling events and are
important in regulating various cell behaviors as well as processes such as regenera-
tion, inflammation, and malignancy. In the following section, we will review current
research methods and techniques for mimicking the mechanics of ECM and we will
mainly focus on stiffness and topographical cues.
TABLE 1.1
Microfabrication Techniques used for 3D Hydrogel Synthesis
Technique Description Resolution Restriction
Soft lithography Hydrogel molding with a master ~100 nm Complex steps and requiring
prepared by microfabrication specific equipments
techniques (e.g.,
photolithography)
Stereolithography Structuration of ~1 μm Requires
photopolymerizable hydrogel photopolymerizable
layer by layer with a laser hydrogels
Laser microstructuration Structuration of hydrogel blocks ~1 μm Depth of structure limited by
by laser ablation the penetration of light into
the hydrogel
Bioprinting Precise deposition of various ~10 μm Limited to specific
hydrogels using a printer hydrogels and expensive
Generating fibers using Co axial flow of crosslinkable ~10 μm Geometry limited to linear
fluid co-flow polymer(s) in solution with cells fibers
ECM components to repair damaged ECM around injured tissue and promote
fibrogenesis while increasing the matrix modulus (Hinz 2007). Therefore, to emulate
the dynamic microenvironment, achieving the real-time control of ECM elasticity is
important for unraveling the effect of environment stiffness during various cellular
processes. One general approach is to soften hydrogel by degrading it hydrolytically
or enzymatically (Metters and Hubbell 2005). This method lacks spatial precision
and may have an undesired influence on the encapsulated cells. Recently, great efforts
have been focused on temporally modulating hydrogel stiffness by light-triggered
reactions. For example, a platform of photodegradable PEG-based hydrogels was
designed by attaching photolabile moiety to PEG base bone during synthesis, result-
ing in the softening of the gel under ultraviolet, visible, or two-photon irradiation
(Kloxin et al. 2009). Other studies also demonstrated using UV light to trigger in situ
secondary crosslinking, causing temporal stiffening of hyaluronic acid hydrogels
in the presence of cells (Guvendiren and Burdick 2012). However, these UV light-
triggered softening or stiffening reactions are not powerful enough to penetrate thick
hydrogels or deep tissues during in vivo experiments.
More recently, an innovative hydrogel system was reported in which alginate gel
stiffness can be temporally modulated by near-infrared light–triggered release of cal-
cium or a chelator from temperature-sensitive liposomes. Liposomes loaded with either
CaCl2 (for stiffening) or diethylenetriaminepentaacetic acid (for softening) release cargo
under irradiation and therefore change the substrate stiffness (Stowers, Allen, and Suggs
2015). This system showed a method to create a hydrogel with user-controlled stiffness
that are highly promising for in vivo applications. Apart from the photoactivated hydro-
gel systems, there are also pH- and temperature-responsive hydrogel systems in which
stiffness changes with pH or temperature changes (Cha, He, and Ni 2012).
Biomechanical Microenvironments 9
FIGURE 1.2 Fabrication of micropost arrays. (a) Showed the relationship between traction
forces F and the physical properties of posts including height L, Young’s modulus of the post
E, moment of inertia I, and resulting deflection of the post δ. As the equation shows, the
deflection is proportional to the force applied by the attached cell. (b) Schematic drawing
of the fabrication method. (c) SEM image of the micropost arrays (Tan et al. 2003). SEM,
scanning electron microscope.
10 Biomimetic Microengineering
FIGURE 1.3 Fabrication of magnetic post arrays. (a) Magnetic microposts under the influ-
ence of a magnetic field B. A force F Mag is applied to the adherent cell through the magnetic
post, that is placed among nonmagnetic silicone elastomeric posts. Nonmagnetic posts reflect
traction forces through post deflection δ. (b) Schematic drawing of the fabrication method.
(c) Relationship between magnetic torque τ, dipole moment μ, and applied field B. Lw is the
nanowire length (Sniadecki et al. 2007).
Biomechanical Microenvironments 11
actuating magnetic posts. The deflection of elastomeric posts can be used to observe
the internal traction force dynamics. These micropost systems offer a convenient
approach to characterize mechanical forces applying to cells or traction forces
generated by cells, which is important in studying dynamic biological interactions
between external and internal forces.
1.2.3.2 Grooves
Substrate topography is a noninvasive method of regulating cell function via
biomimetic cell-stimulating cues (Lim and Donahue 2007). Since cells in vivo
interact with textured basement membranes or matrix that are composed of micro-
and nanoscale pores, fibers, and protrusions, engineering biomaterial surfaces into
micro- and nanogrooves has emerged as a popular method to mimic the extracellular
milieu, present topological cues, and control regulation of cellular systems. Early
studies have shown that cells elongated and aligned with microgrooved substrates
via the guidance of microtubules, actin microfilaments, and the interplay between
the lamellipodium and ECM molecules (Walboomers, Ginsel, and Jansen 2000).
Moreover, the microstructured surface patterning also mediates FA formation and
cytoskeletal organization. These microgrooves are generally fabricated with pho-
tolithographic techniques and various groove depth, width, and ridge width can be
easily manipulated via different wafer templates. Recent research indicated that sur-
face microgrooves regulate various cell behaviors, including migration (Dalton et al.
2001), proliferation, gene expression (Lee et al. 2009), epigenetic states (Downing
et al. 2013), and differentiation (Cai et al. 2012).
In the recent decade, the nanogrooved ECM has emerged as an attractive tool to
investigate the relationship between nanoscale topographical cues and cellular func-
tions. A variety of nanostructures, between 100 nm and 1 μm, can now be fabricated
and incorporated into in vitro experimental platforms to mimic the structural and
mechanical intricacies of 3D in vivo ECM environments (Kim, Provenzano et al.
2012). A variety of nanofabrication methods have been used for nanogrooves, with
the most popular ones including microcontact printing, capillary force lithography,
molding in capillaries, and so on (Kim, Lee et al. 2010). Interestingly, multiple cell
types align parallel to the nanogrooves, with some cell lines more sensitive to the
topographical signals than others (Biela et al. 2009). For example, nanogrooves imi-
tating the myocardial ECM is capable of promoting rodent cardiomyocytes to form
engineered cardiac tissue constructs that mimic the highly organized function in
in vivo cardiac tissues (Kim, Lipke et al. 2010). Similar nanotopographic cell cul-
ture platform also induced the structural maturation and sarcomere development in
human induced pluripotent stem cell-derived cardiomyocytes (Carson et al. 2016).
While many studies observed and examined the effects of micro- and nanogrooves
on cells (Flemming et al. 1999), how cells sense and adapt to topographical signals
have not been extensively analyzed. When cells spread on the substrate and penetrate
into the grooves, it may have an influence on FA formation and cell spreading,
change cytoskeletal contraction forces and further impact downstream pathways
(Kim, Lipke et al. 2010) including ion channel switch, nucleus gene expression,
protein activation, or suppression, etc. Thus, matrix micro- and nanotopography
has important implications in investigating the interaction between topography
12 Biomimetic Microengineering
A G U I N E A Cargo.
l. s. d. l. s. d.
10 Cotton Ramalls at 0 11 0 5 10 0
10 Silk Do 1 00 0 10 00 0
20 Herba-longees 0 10 0 10 00 0
20 Photees 0 17 6 17 10 0
30 Tapseils 0 12 0 18 00 0
20 Blue swaft Bafts 1 02 0 22 00 0
20 Chintz 0 12 6 12 10 0
50 Nichanees 0 13 0 32 10 0
176 Blue Paper Sletias 0 7 6 66 00 0
650 Crystal Beads No 221 per Mill. 2 00 0 13 00 0
2500 Do — No 30 2 12 0 6 10 —
4500 Do — No 36 2 18 0 13 01 0
2000 Rangos per Cwt. 0 11 0 11 00 0
4 Cases and Chests — — — 1 15 0
Charges and Entry at Custom-house — — — 3 12 6
Ct. q. l.
20 Brass Kettles qt. 2 0 02
28 Do 2 0 04
25 Do 2 0 06
251 Guinea Pans 3 0 18
-------------
9 1 02
per Cwt. 7l. 7s. 0d. 68 02 5
-------------
311 00 11
4 Casks 1 03 00
20 Chests of old Sheets each qt. 65,
0 1 10½ 121 17 06
at
130 2lb. Guinea Basins.
73 3 — Do
13 4 — Do
In all 4Cwt. 1q. 11l. 18 04 09
Box of Scales, Weights and blue
— 19 00
Pans.
Cartage, Portage, Wharfage, &c. 4 10 00
84 Quart Tankards at 2s. 2d. 9 02 00
96 Pint Do at 1 8 8 00 00
A Cask — 14 09
11 Groce of slope-pointed Knives at
14 06 00
1l. 6s.
200 Blue Ranters at 0 08 00 80 00 00
50 Narrow green Do 0 08 00 20 00 00
50 Broad blue Do 0 11 06 28 15 00
25 Says at 1 15 06 44 09 06
8 Cases with Carriage 2 10 06
150 Trading Guns at 0 08 03 61 17 06
50 Do dock Locks 0 08 06 21 05 00
150 Cags 0 00 07 02 10 06
21 Cwt. Tallow 2 01 00 43 01 00
For melting and putting up per Cwt. — 00 02 2 03 00
Cartage, and 10 large Cags — 00 11 00 16 08
-------------
797 06 07
35 Small Cags at 0 00 08 1 03 04
10 Barrels of Powder 3 05 00 32 10 00
Wateridge and shifting the Powder 00 08 06
50 Wickered Bottles 0 03 02 9 03 04
172 Gall. malt Spirits 0 02 00 17 04 00
40 Cases of Spirits 0 07 00 14 00 00
Freight of a Vessel to Portsmouth 5 10 00
Expences and Postage of Letters 0 11 00
Commission at 2½ per Cent. 22 03 03
-------------
900 00 00
10 Cwt. of Cowrys at 5l. 50 00 00
-------------
Total 950 00 00
I was but a young Trader, and could not find out till I came upon
the Coast, that this Cargo was ill sorted. At the first place we touched
(Sierraleon) where commonly may be got twenty or thirty as good
Slaves as any upon the Coast, I found I had neither Cutlasses, iron
Bars, a better sort of Fire-Arms, Malt, and other strong Liquors, the
delight of those Traders. At none of the others, quite down to the
Gold Coast, were many considerable Articles of my Invoyce ever
asked for; so that I was forced to make friends with the Factorys, and
exchange at such a loss, that had it not been for the small Wages
our Ship was at, and some lucky hits, the Owners must have
suffered much; but to give an Insight.
7 50lb. Kettles 20
5 Pieces of Brawls 10
1 Piece of Ramal 4
1 Bar of Iron 1
---
The Price of a Boy Slave 35
At Apollonia.
Accys.
2 Photees 14
2 Cotton Ramals 8
1 Piece Longee 4
2 Sletias 5
7 Sheets 7
32 Brass Pans 32
---
A Man Slave 70
3 Photees 21
41 Sheets 41
2 Longees 8
---
A Man Slave 70
At Gambia.
Gold Bars.
9 Gallons of Brandy 9
6 Bars of Iron 6
2 Small Guns 10
1 Cag of Powder 10
2 Strings of Pacato Beads 2
1 Paper Sletia 3
---
A Woman Slave 40
At Assinee.
8 Trading Guns 32
1 Wicker Bottle 4
2 Cases of Spirits 6
28 Sheets 28
---
A Man Slave 70
At Whydah,
Cowrys sell per Cwt.—— 12l. 10s. or in their
way of reckoning, 10 grand Quibesses.
At Angola, the Duties are about 100l. Sterl.
every Ship; and Goods sell, viz.
Pieces.
A Gun 1
A Cag of Powder 1
A deep blue Baft 3
A Culgee 3
A Tapseil 2
A Nicanee 2
A Cutchalee 1½
A red Chintz 1½
A Bundle of Anabasses qt. 10lb. 1
10 Brass Pans small and large 1
4 2lb. Pewter Basins 1
1½ Case of Spirits 1
A whole Case Do 1½
4 Cutlasses 1
A Guinea Stuff ½
2 Bunches of Beads 1
4 King’s Cloths 1
4 Looking-Glasses 1
10 Pint Mugs 1
A Brawl ½
9 Foot of black Bays 1
16 Inches of Scarlet Cloth 1
16 Do of blue Cloth 1
1 Photee 2
1 Pair Cotton Ramal 1½