Professional Documents
Culture Documents
Download textbook Computational Modeling Of Objects Presented In Images Fundamentals Methods And Applications 4Th International Conference Compimage 2014 Pittsburgh Pa Usa September 3 5 2014 1St Edition Yongjie Jessica ebook all chapter pdf
Download textbook Computational Modeling Of Objects Presented In Images Fundamentals Methods And Applications 4Th International Conference Compimage 2014 Pittsburgh Pa Usa September 3 5 2014 1St Edition Yongjie Jessica ebook all chapter pdf
https://textbookfull.com/product/combinatorial-optimization-and-
applications-8th-international-conference-cocoa-2014-wailea-maui-
hi-usa-december-19-21-2014-proceedings-1st-edition-zhao-zhang/
https://textbookfull.com/product/conceptual-modeling-33rd-
international-conference-er-2014-atlanta-ga-usa-
october-27-29-2014-proceedings-1st-edition-eric-yu/
High Performance Computing for Computational Science
VECPAR 2014 11th International Conference Eugene OR USA
June 30 July 3 2014 Revised Selected Papers 1st Edition
Michel Daydé
https://textbookfull.com/product/high-performance-computing-for-
computational-science-vecpar-2014-11th-international-conference-
eugene-or-usa-june-30-july-3-2014-revised-selected-papers-1st-
edition-michel-dayde/
https://textbookfull.com/product/computational-logistics-5th-
international-conference-iccl-2014-valparaiso-chile-
september-24-26-2014-proceedings-1st-edition-rosa-g-gonzalez-
ramirez/
https://textbookfull.com/product/formal-modeling-and-analysis-of-
timed-systems-12th-international-conference-
formats-2014-florence-italy-september-8-10-2014-proceedings-1st-
edition-axel-legay/
https://textbookfull.com/product/formal-methods-in-macro-biology-
first-international-conference-fmmb-2014-noumea-new-caledonia-
september-22-24-2014-proceedings-1st-edition-francois-fages/
Yongjie Jessica Zhang
João Manuel R.S. Tavares (Eds.)
Computational Modeling
of Objects
LNCS 8641
Presented in Images
Fundamentals, Methods, and Applications
4th International Conference, CompIMAGE 2014
Pittsburgh, PA, USA, September 3–5, 2014
Proceedings
123
Lecture Notes in Computer Science 8641
Commenced Publication in 1973
Founding and Former Series Editors:
Gerhard Goos, Juris Hartmanis, and Jan van Leeuwen
Editorial Board
David Hutchison
Lancaster University, UK
Takeo Kanade
Carnegie Mellon University, Pittsburgh, PA, USA
Josef Kittler
University of Surrey, Guildford, UK
Jon M. Kleinberg
Cornell University, Ithaca, NY, USA
Alfred Kobsa
University of California, Irvine, CA, USA
Friedemann Mattern
ETH Zurich, Switzerland
John C. Mitchell
Stanford University, CA, USA
Moni Naor
Weizmann Institute of Science, Rehovot, Israel
Oscar Nierstrasz
University of Bern, Switzerland
C. Pandu Rangan
Indian Institute of Technology, Madras, India
Bernhard Steffen
TU Dortmund University, Germany
Demetri Terzopoulos
University of California, Los Angeles, CA, USA
Doug Tygar
University of California, Berkeley, CA, USA
Gerhard Weikum
Max Planck Institute for Informatics, Saarbruecken, Germany
Yongjie Jessica Zhang
João Manuel R.S. Tavares (Eds.)
Computational Modeling
of Objects
Presented in Images
Fundamentals, Methods, andApplications
13
Volume Editors
Yongjie Jessica Zhang
Carnegie Mellon University
Department of Mechanical Engineering
5000 Forbes Avenue, Pittsburgh, PA 5213, USA
E-mail: jessicaz@andrew.cmu.edu
This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of
the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation,
broadcasting, reproduction on microfilms or in any other physical way, and transmission or information
storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology
now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection
with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and
executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication
or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location,
in ist current version, and permission for use must always be obtained from Springer. Permissions for use
may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution
under the respective Copyright Law.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication
does not imply, even in the absence of a specific statement, that such names are exempt from the relevant
protective laws and regulations and therefore free for general use.
While the advice and information in this book are believed to be true and accurate at the date of publication,
neither the authors nor the editors nor the publisher can accept any legal responsibility for any errors or
omissions that may be made. The publisher makes no warranty, express or implied, with respect to the
material contained herein.
Typesetting: Camera-ready by author, data conversion by Scientific Publishing Services, Chennai, India
Printed on acid-free paper
Springer is part of Springer Science+Business Media (www.springer.com)
Preface
General Co-chairs
Jessica Zhang Carnegie Mellon University, USA
Joao Manuel R.S. Tavares Universidade do Porto, Portugal
Steering Committee
João Manuel R.S. Tavares Universidade do Porto, Portugal
Renato M. Natal Jorge Universidade do Porto, Portugal
Daniela Iacoviello Università degli Studi di Roma “La Sapienza”,
Italy
Scientific Committee
Lyuba Alboul Sheffield Hallam University, UK
Enrique Alegre Universidad de Leon, Spain
Michel Audette Old Dominion University, USA
Jorge M.G. Barbosa Universidade do Porto, Portugal
Reneta Barneva State University of New York, USA
George Bebis University of Nevada, USA
Manuele Bicego University of Verona, Italy
Elisabetta Binaghi Università dell'Insubria Varese, Italy
Nguyen D. Binh Hue University, Vietnam
John C. Brigham University of Pittsburgh, USA
Valentin Brimkov Buffalo State College, USA
Begoña Calvo Calzada Universidad de Zaragoza, Spain
M. Emre Celebi Louisiana State University in Shreveport, USA
Andrey Chernikov Old Dominion University, USA
Gary Christensen University of Iowa, USA
Michela Cigola University of Cassino, Italy
Stefania Colonnese Sapienza University of Rome, Italy
Miguel V. Correia Universidade do Porto, Portugal
Alexandre Cunha California Institute of Technology, Pasadena
(CA), USA
Jorge Dias Universidade de Coimbra, Portugal
Alexandre X. Falcão Universidade Estadual de Campinas, Brazil
Yusheng Feng The University of Texas at San Antonio, USA
José A.M. Ferreira Universidade de Coimbra, Portugal
Ender Finol The University of Texas at San Antonio, USA
Alejandro Frangi The University of Sheffield, UK
Sidharta Gautama Ghent University, Belgium
VIII Organization
Supporting Organizations
Carnegie Mellon University
Faculdade de Engenharia da Universidade do Porto (FEUP)
Universidade do Porto (UP)
Instituto de Engenharia Mecânica e Gestão Industrial (INEGI)
Fundação para a Ciência e a Tecnologia (FCT)
Springer
Taylor & Francis Group
Keynote Talks
On Development of an Anatomical,
Structural, and Mechanical Integrated Model
of the Mitral Valve
Michael Sacks
Professor of Biomedical Engineering
W.A. “Tex” Moncrief, Jr. Simulation-Based Engineering Science Chair I
Director of the ICES Center for Cardiovascular Simulation-based Engineering
Institute for Computational Engineering and Sciences
The University of Texas at Austin, USA
Abstract. The mitral valve (MV) is one of the four heart valves which
locates in between the left atrium and left ventricle and regulates the
unidirectional blood flow and normal functioning of the heart during
cardiac cycles. Alternation of any component of the MV apparatus will
typically lead to abnormal MV function. Currently 40,000 patients in
the United States receive MV repair or replacement annually according
to the American Heart Association. Clinically, this can be achieved iter-
atively by surgical repair that reinstate normal annular geometry (size
and shape) and restore mobile leaflet tissue, resulting in reduced annular
and chordae force distribution. High-fidelity computer simulations pro-
vide a means to connect the cellular function with the organ-level MV
tissue mechanical responses, and to help the design of optimal MV re-
pair strategy. As in many physiological systems, one can approach heart
valve biomechanics from using multiscale modeling (MSM) methodolo-
gies, since mechanical stimuli occur and have biological impact at the
organ, tissue, and cellular levels. Yet, MSM approaches of heart valves
are scarce, largely due to the major difficulties in adapting conventional
methods to the areas where we simply do not have requisite data. There
also re-mains both theoretical and computational challenges to applying
traditional MSM techniques to heart valves. Moreover, existing physi-
ologically realistic computational models of heart valve function make
many assumptions, such as a simplified micro-structural and anatomi-
cal representation of the MV apparatus, and thorough validations with
in-vitro or in-vivo data are still limited. We present the details of the
state-of-the-art of mitral valve modeling techniques, with an emphasis
on what is known and investigated at various length scales.
Short Bio: Professor Michael Sacks is the W.A. “Tex” Moncrief, Jr. Simulation-
Based Engineering Science Chair and a world authority on cardiovascular
biomechanics. His research focuses on the quantification and modeling of the
XIV M. Sacks
Selected Recognitions:
Fellow, American Society of Mechanical Engineers
Fellow (Inaugural), Biomedical Engineering Society
Fellow, American Institute for Medical and Biological Engineering
Van C. Mow Medal, American Society for Mechanical Engineers Bioengineering
Division
Chancellor’s Distinguished Research Award, University of Pittsburgh
Ph.D., Biomedical Engineering, University of Texas Southwestern Medical Cen-
ter at Dallas
M.S., Engineering Mechanics, Michigan State University
B.S. Engineering Mechanics, Michigan State University
Image Based Modeling of Biomaterials Based on
Galerkin and Collocation Meshfree Method
Abstract. This work introduces meshfree method for image based mod-
eling of biomaterials. The proposed approach allows a direct construction
of simulation model based on pixel data obtained the MRI images. The
pixel points serve for dual purposes in the meshfree modeling: they are
used to define the geometry of the subject and are employed as the
discrete points to obtain approximate solution of the governing partial
differential equations. The material properties and the fiber orientation
information in the DTI data are stored at each pixel point, and the dis-
placements, stresses and strains are solved at each pixel point as well.
The meshfree approximation with smooth kernel allows a representation
of material heterogeneity with smooth transition across the material in-
terfaces. The point based reproducing kernel (RK) approximation also
avoids the complexity in construction of the well shaped mesh in the
conventional finite element method. Two types of meshfree method for
image based modeling of biomaterials are introduced, one based on Gel-
erkin type weak formulation and the other based on a direct collocation
of differential equations. In conjunction with the level set based image
segmentation technique, we apply the proposed meshfree methods to
multiscale modeling of bone materials as well as simulation of skeletal
muscles under contraction.
Short Bio: Prof. Jiun-Shyan (JS) Chen is the William Prager Chair of
Structural Engineering at UCSD. He earned his undergraduate degree from Na-
tional Central University in Taiwan, and Master’s and Ph.D. from Northwestern
University. Before moving to UCSD in October 2013, he was the Chancellor’s
Professor of UCLA and has served as the Department Chair of Civil & Environ-
mental Engineering Department (2007-2012). His research is in computational
mechanics and multiscale materials modeling with specialization in development
of meshfree methods. He is one of the original developers of the meshfree Re-
producing Kernel Particle Method (RKPM). He has applied meshfree methods
to large deformation and contact mechanics, geomechanics, shock waves, high
strain rate fragment-impact problems, biomechanics, molecular mechanics, quan-
tum mechanics, as well as multi-scale mechanics and materials.
He is the past President of US Association for Computational Mechanics
(USACM) and is currently serving on the Executive Council of the International
XVI J.-S. Chen
Jelena Kovačević
Short Bio: Prof. Jelena Kovačević received a Ph.D. degree from Columbia Uni-
versity. She then joined Bell Labs, followed by Carnegie Mellon University in
2003, where she is currently Professor and Head of the Department of Electrical
and Computer Engineering and a Professor in the Department of Biomedical
Engineering. She received the Belgrade October Prize and the E.I. Jury Award
at Columbia University. She is a coauthor on an SP Society award-winning paper
and is a coauthor of the books “Wavelets and Subband Coding” and ”Founda-
tions of Signal Processing”. Dr. Kovacevic is the Fellow of the IEEE and was
the Editor-in-Chief of the IEEE Transactions on Image Processing. She was a
XVIII J. Kovačević
Ross Whitaker
Professor in School of Computing
Scientific Computing and Imaging Institute
University of Utah, USA
Short Bio: Ross Whitaker graduated Summa Cum Laude with B.S. degree
in Electrical Engineering and Computer Science from Princeton University in
1986. From 1986 to 1988 he worked for the Boston Consulting Group, entering
the University of North Carolina at Chapel Hill in 1989. At UNC he received
the Alumni Scholarship Award, and completed his Ph.D. in Computer Science in
1994. From 1994–1996 he worked at the European Computer-Industry Research
Centre in Munich Germany as a research scientist in the User Interaction and
Visualization Group. From 1996–2000 he was an Assistant Professor in the De-
partment of Electrical Engineering at the University of Tennessee and received
an NSF Career Award. Since 2000 he has been at the University of Utah where
he is faculty member of the Scientific Computing and Imaging Institute and
a Professor and the Director of the School of Computing. He teaches discrete
math, scientific visualization, and image processing. Professor Whitaker leads a
graduate-level research group in image analysis, geometry processing, and sci-
entific computing, with a variety of projects supported by both federal agencies
and industrial contracts. He is an IEEE Fellow and a member of the Computing
Community Consortium.
A Predictive Mathematical Model
of Acupuncture Based on an Explanation
Biological Model
Marc Thiriet
Laboratoire Jacques-Louis Lions (LJLL)
Université Pierre et Marie Curie - Paris 6 (UPMC)
France
Short Bio: Marc Thiriet was educated at Medicine Faculty of Lille and Univer-
sity Pierre and Marie Curie ([UPMC] MD), and then at Technology University of
Compiègne (3rd cycle Doctorate in Biomechanics), and Physics College of Uni-
versity Denis Diderot (Accreditation to Supervise Research). He was assistant
physician in the lung disease department of Pontoise hospital. He is currently
a member of the INRIA-UPMC-CNRS team REO in Laboratory Jacques-Louis
Lions (applied math.) of UPMC. He worked in flows in collapsible tubes applied
to airways and veins, 3D unsteady developing laminar flows in bend and branch-
ings, both experimentally and numerically, as well as in models derived from 3D
reconstruction of human anatomy. He is now involved in mathematical modeling
of biological processes.
Marc Thiriet is the author of Biology and Mechanics of Blood Flows (2∼Vols.)
and the book series “Biomathematical and Biomechanical Modeling of the Cir-
culatory and Ventilatory Systems” (9 Vols., 6 published books). He is associate
editor for the medical encyclopedia “Pan Vascular II”. He also wrote the chap-
ter Biofluid Flow and Heat Transfer for the next edition of Handbook of Fluid
Dynamics. He is President of the french committee for Intensive Computation
in Biology and Medicine and was involved in European committees for HPC
(HPC-Europa-2 and PRACE). He is an Internal Reviewer of several Evaluation
Groups of the Canadian Granting Agency (NSERC, mainly Mech. Eng. and also
Life Sciences, Chemistry, Material and Chem. Eng., Computer Sci., and Mathe-
matics). He was a Member of the “Biology” Panel of the french National Strategy
for Research and Innovation (SNRI). He won the Grand Prix de la Fondation
scientifique Franco-Taiwanaise in 2011 from the french Academy of Sciences and
Taiwainese Science Council with his colleague Tony WH Sheu for their contribu-
tion in high-intensity focused ultrasound (HIFU)-based treatment of liver cancer
and the first modeling of acupuncture.
Multi-Scale Image-Based Modeling
of the Failing Heart: From Cell to Patient
Andrew D. McCulloch
Distinguished Professor of Bioengineering and Medicine
Jacobs School Distinguished Scholar
University of California San Diego
La Jolla, CA 92093-0412, USA
Abstract. Multi-scale models of the heart have been developed that in-
tegrate both functionally across biomechanical, electrophysiological and
regulatory functions and structurally across physical scales of organiza-
tion from molecule to organ system. Imaging is central to the develop-
ment of multi-scale cardiac models at all scales of biological organiza-
tion, especially in disease states such as heart failure where structural
remodeling of cells, tissue and the whole heart are all key contributors to
mechanical dysfunction and arrhythmia risk. Here, we illustrate the de-
velopment and application of these imaged-derived computational mod-
els to improving understanding and treatment of heart disease using
several examples including: Microanatomically detailed models of sub-
cellular and cellular biophysics generated from 3D electron tomograms;
multi-scale models of murine ventricular mechanics derived from mouse
cardiac magnetic resonance imaging; and patient-specific computational
models of human atrial fibrillation and dyssynchronous heart failure to
improve diagnosis and treatment efficacy.
Image Segmentation
Segmentation of Two-Phase Flow: A Free Representation for Levet Set
Method with a Priori Knowledge . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 115
Mauren Louise Sguario, Lucia Valeria Ramos de Arruda,
Iuri Nack Buss, and Henderson Cari Nascimento
1 Introduction
Liver cancer is the second leading cause of death in Asia and pertains to the most
common malignancy worldwide. In addition to the open and minimally inva-
sive surgery, cryotherapy, radio-frequency (RF) ablation, microwave coagulation
therapy, laser-induced thermotherapy, and catheter-based infusion chemother-
apy followed by transarterial chemoembolizationinfusion chemotherapy (TACE),
high-intensity focused ultrasound (HIFU)-based treatment is noninvasive, non-
ionizing technique. Thermal ablation relies on the observation that a temperature
Y.J. Zhang and J.M.R.S. Tavares (Eds.): CompIMAGE 2014, LNCS 8641, pp. 1–11, 2014.
c Springer International Publishing Switzerland 2014
2 M. Thiriet, M. Solovchuk, and T.W.-H. Sheu
2 Method
where p is the acoustic pressure, c the characteristic medium sound speed, ρ0 the
medium density at rest, D the acoustic diffusivity (2c3 α/ω 2 in a thermoviscous
4 M. Thiriet, M. Solovchuk, and T.W.-H. Sheu
1 ∂ 2p D ∂3p κ ∂ 2 p2
∇2 p − + + + Pk = 0,
c2 ∂t2 c4 ∂t3 ρ0 c4 ∂t2
k
∂ 2 ∂3p
1 + τk Pk = 3 ck τk 3 ,
∂t c ∂t
where τi and ci are the characteristic relaxation time and small sound speed
component.
First-order non-reflecting boundary conditions are imposed:
∂p 1 ∂p
= ,
∂n c ∂t
Table 1. Acoustic and thermal properties of the hepatic parenchyma and blood (cp :
specific heat capacity at constant pressure; GT : thermal conductivity)
c ρ cp GT
(m/s) (kg/m3 ) (J/[kg·K]) (W/[m·K])
Liver 1550 1055 3600 0.51
Blood 1540 1060 3770 0.53
Tumor 1550 1000 3800 0.55
where In are intensities for the respective harmonics n f0 . The ultrasound power
deposition per unit volume is calculated as follows:
∞
qs = 2α(n f0 )In (6)
n=1
The acoustic streaming obeys the following equation, in the absence of body
forces, the force vector exerted by an imposed ultrasound beam being assumed
to act on blood along the acoustic axis (n):
ρ Dt v = −∇p + ν∇2 v + F, (7)
where F (physical dimension M/(LT )2 ) is given by:
qs
F·n = .
c0
6 M. Thiriet, M. Solovchuk, and T.W.-H. Sheu
The original Westervelt equation was derived for thermoviscous fluids. Disper-
sive biological tissues are characterized by a frequency-dependent phase velocity
and attenuation. The acoustic attenuation depends linearly on frequency. Each
relaxation process has its characteristic relaxation time (τi ) and small sound
speed increment (ci ).
The absorption coefficient at frequency ωn = nω0 has the following form:
1 ck τk ωn
2
δωn2
α(ωn ) = + . (9)
2c30 c20 1 + (τk ωn )2
k=1
Five unknown parameters {δ, {ck }21 , {τk }21 } in the Westervelt equation are
calculated by minimizing a mean square error between the experimental tissue
attenuation (using Eq. 8 with p = 1) and the relaxation model (Eq. 9) in the
frequency range from 0.5 to 20 MHz (Table 2).
Parameter Value
δ 0.0022
c1 5.3 m/s
c2 4.3 m/s
τ1 2.3 × 10−6 s
τ2 2.4 × 10−7 s
∂ 2 p2 2 n+1 2 n
n 2 2 n
∂p n ∂p n+1
= 2 2 ∂t ∂t + p n∂ p
∂t2 + p n+1 ∂ p
∂t2 − 2 ∂p
∂t − 2p n∂ p
∂t2 ; (10)
∂t2
∂p n+1 1
= (3pn+1 − 4pn + pn−1 );
∂t 2Δt
Another random document with
no related content on Scribd:
THE RIVALS
By Paul Laurence Dunbar
—Copyright by Dodd, Mead & Co., New York, and used by special
arrangement.
THE FIRST FURROW
By James J. Montague
Don’t you ever feel a yearnin’, ’long about this time o’ year,
For a robin’s song to tell you that the summer time is near?
Don’t you ever sort o’ hanker for the blackbird’s whistlin’ call,
Echoin’ through the hillside orchard, where the blossoms used to
fall?
Don’t you wish that you were out there, breathin’ in the April air,
Full o’ glad an’ careless boyhood, an’ with strength an’ health to
spare?
Don’t it hurt you to remember, when the springtime comes around,
How the first, long, rollin’ furrow used to wake the sleepy ground?
How’d you like to take the children, born to dirty city streets,
Out to where the brook goes pulsin’ when the heart o’ nature beats?
How’d you like to watch ’em wonder at the boomin’ of the bees,
Or to see ’em dodge the petals that are snowin’ from the trees?
How’d you like to see their faces catch the color o’ the rose,
As they raced across the meadow where the earliest crocus grows?
Wouldn’t it be joy to watch ’em follow on behind the plow,
As it cut the first brown furrow, like it’s doin’ out there now?
SUNSHINE
By Fred Emerson Brooks
“CICELY”
ALKALI STATION
By Bret Harte
I’ve had some mighty mean moments afore I kem to this spot,—
Lost on the plains in ’50, drowned almost, and shot;
But out on this alkali desert, a hunting a crazy wife,
Was ra’ly as on-satis-factory as anything in my life.
Listen! thar’s the same music; but her lungs they are stronger now
Than the day I packed her and her mother,—I’m derned if I jest know
how.
But the doctor kem the next minit, and the joke o’ the whole thing is
That Cis. never knew what happened from that very night to this!
But Cicely says you’re a poet, and maybe you might, some day,
Jest sling her a rhyme ’bout a baby that was born in a curious way,
And see what she says; but, old fellow, when you speak of the star,
don’t tell
As how ’twas the doctor’s lantern,—for maybe ’twon’t sound so well.
RECIPROCITY
By H. Bedford-Jones
HULLO!
By Sam Walter Foss
COLUMBUS
By Arthur Hugh Clough
Then he sat down beside her, and an hour or two went by,
But still upon the grassy brink his rod and line did lie;
“I thought,” she shyly whispered, “you’d be fishing all the day!”
And he was—in the usual way.
So he gravely took his rod in hand and threw the line about,
But the fish perceived distinctly he was not looking out;
And he said, “Sweetheart, I love you,” but she said she could not
stay,
But she did—in the usual way.
Then the stars came out above them, and she gave a little sigh
As they watched the silver ripples like the moments running by;
“We must say good-by,” she whispered by the alders old and gray.
And they did—in the usual way.
And day by day beside the stream, they wandered to and fro,
And day by day the fishes swam securely down below,
Till this little story ended, as such little stories may,
Very much—in the usual way.
And now that they are married, do they always bill and coo?
Do they never fret and quarrel, like other couples do?
Does he cherish her and love her? Does she honor and obey?
Well, they do—in the usual way.
HUMOROUS SELECTIONS IN POETRY
A SIMILAR CASE
Anonymous
IRISH CASTLES
By Fitz-James O’Brien