Professional Documents
Culture Documents
Odey Peter A Project-1
Odey Peter A Project-1
INTRODUCTION
Fish farming has important role in meeting the increase demand for fish production. Poor
water quality of pond acts as predisposing factors for many infectious diseases which can
cause mass mortality in freshwater fishes (Krupa, Prasanna, Prejit, Anoopraj, and Ajith,
2019). Fish and its product are very important to human population all over the world (Njoku,
Agwa, and Ibiene, 2015). This is because it is the preferred source of animal protein as
compared to others (i.e. poultry, beef, mutton or pork) (Delgado, Parisi, and Vaz-Almeida,
2017). It is comparatively cheaper and highly acceptable with little or no religious preference
which gives it advantage over other proteins, benefiting the body with high biological value
in terms of high protein retention in the body, low cholesterol level and presence of essential
amino acids (Adewuyi et al., 2010; Emikpe et al., 2011). Fishery products are not only
important from a nutritional point of view, but also important for international trade, foreign
exchange for a number of countries in the world and creation of job opportunities (Adebayo
Agriculture is an integral part of the Nigerian economy employing over 70% of the active
labour force. Catfish production plays a major role in Nigeria aquaculture industry given that
it is the largest segment of aquaculture in Nigeria (Oluwatayo and Adedeji, 2019; Garlock et
al., 2020). Most catfish are cultured in the southern part of Nigeria, and the industry is
Fishes are cultivated in different culture media or controlled environment which could be
ponds (concrete or earthen), vats (wooden or fiber glass) and plastics. The most widely used
cultivation medium is the concrete and earthen ponds (Fakorede et al., 2020). Earthen pond
culture system has been the traditional method of fish cultivation in Nigeria, until recently the
concrete pond culture system is in use as land becomes scarce, expensive and unavailable. In
Nigeria it has been estimated that 73% of fish farmers make use of concrete ponds compared
to the 27% using earthen ponds. The water quality of a fish farm is determined by its
physicochemical and biological properties (Famoofo et al., 2020). The determinants of the
water quality may include the questionable sources of water, the feed used for the fish which
are produced from animal manure which may serve as a suitable substrate for a wide variety
of microbial growth in the pond. Water sources for earthen ponds are usually untreated
surface water runoffs from streams, rivers, lakes, stored waters while underground water
source is being utilized for most concrete ponds. Water from underground sources such as a
well is pumped and stored in storage tank which is used to refill the ponds when the water is
to be changed at intervals of about 3-5 days (Kim et al., 2021). The feed used for fish in these
ponds contain organic materials from cow dungs and introduces a wide variety of
microorganisms into the ponds. Bacterial pathogens isolated from the fish feed include: E.
coli, E. coli 0157:H7, Shigella dysenteriae, Staphylococcus aureus, Salmonella typhi, Vibrio
2013; Ramírez-Castillo et al., 2015). The microbial flora of a cultivated fish is a reflection of
Wastewater contains offensive and possibly dangerous substances which are mostly of
environment. Discharge of untreated wastewater pollutes the soil and surface water and this
could be worsened during flooding (Edokpayi et al., 2017). Heavy metals such as cadmium,
zinc, mercury, chromium, copper, cobalt, nickel, manganese, iron, vanadium and
molybdenum from industries cause heavy pollution particularly in the ponds, lakes and river
systems increasing the Biological Oxygen Demand (BOD). The use of indicator bacteria such
as faecal coliforms in water quality determination is widely used. Coliforms and Escherichia
coli are of great importance among bacterial indicators used in water quality assessment.
alkalinity, total hardness, total solids, transparency values, carbon dioxide, nitrite-nitrogen,
sulphates, carbonates and ammonia are some of the salient factors to consider in relation to
The high demand of fish has resulted to the increase in the number of fish pond in Calabar
metropolis. Individual farmers, organized groups and institutions have developed and
construct fish ponds and started fish farming oblivious of the cost. The wastewater from these
fish ponds are often discharged into the surrounding drains. Thereby introducing some
pathogenic organisms to the surrounding water bodies and farmlands. Hence, this study was
conducted to determine the quality of the wastewater in order to subject such water to proper
treatment to protect the environment, plant, animal and man. This study will throw more light
on the chain of transmission of infection and necessary management systems required for
microbiological quality maintenance of pond water sources. The study will also help policy
makers to guide informed decision making in respect to wastewater treatment and discharge
The aim of this study is to carry out bacteriological examination of fish pond effluents from
2. Identify and characterize bacterial isolates from the sampled fish pond effluents in the
study area
3. Determine the prevalence of occurrence of bacterial isolates from selected fish ponds
in the study
species.
Fish Farming: This is the form of aquaculture in which fish are reared in enclosures to be
sold as food.
Fish pond: This is a controlled pond, small artificial lake or retention basin that is stocked
with fish and is used in aquaculture for fish farming for recreational fishing, or for
ornamental purposes.
Wastewater: These are water generated after the use of fresh water, raw water, drinking
LITERATURE REVIEW
Aquaculture is one of the world's fastest increasing industries of agriculture (FAO 2014).
Aquaculture is a significant financial activity in many nations and provides possibilities for
and food security in tropical and subtropical areas. Aquaculture can also have immediate
adverse effects on wild fish, birds and mammals such as seals and sea lions. Aquaculture, the
fastest increasing significant food sector for centuries, presently generates 53% of the
worldwide fish we eat and is mainly liable for increasing the consumption per capital of fish
goods since the 1960s (SOFIA, 2018). Global fish production peaked at approximately 171
million tons in 2016, with aquaculture accounting for 47% of the total and 53% excluding
non-food uses (including reductions in fishmeal and fish oil). Fish and fish products are today
fish manufacturing joined international trade in multiple forms. The 60 million tons of total
fish and fish products exported in 2016 (live weight equivalent) constitute a rise of 245
percent over 1976. World trade in fish and fish goods also increased considerably in terms of
value during the same era, with exports increasing from USD 8 billion in 1976 to USD 143
billion in 2016.
distribution of manufacturing between areas and nations within the same area has stayed
pronounced and mainly unchanged over the previous century. For more than two decades,
Asia has accounted for around 89 percent of world aquaculture manufacturing. Africa and the
Americas have raised their corresponding shares in complete world manufacturing over the
same period, while Europe's and Oceania's shares have significantly fallen. Over the previous
two decades, Egypt, Nigeria, Chile, India, Indonesia, Viet Nam, Bangladesh and Norway
have reinforced to differing degrees their share of regional or world manufacturing. With
greater population growth and growing economically active populations in the agricultural
sector, Africa and Asia have shown a usually favorable trend in the amount of individuals
Without referring to Nigeria, the increase in African contribution to world fish production
and the rapid growth of aquaculture in Africa cannot be discussed. Being the second highest
producer of cultured fish in Africa (second to Egypt) and the highest producer of the second
most important aquaculture product in Africa (Clarias gariepinus) (FAO, 2012), Nigeria has
production level of about 40 000 metric tonnes (only 6% of the total domestic fish
production) in 2006 to 200 535 metric tonnes (24.4% of the total domestic fish production) at
People in the world depend on fish as a supplement of their food nutrients. Fish has become
an increasingly important source of protein and other elements necessary for the maintenance
of a healthy body (Emikpe et al., 2011). Fish and seafood constitute an important food
component for a large section of the world’s population. Throughout history; humans have
used fish as a source of protein, Fish is the third staple animal protein and forms a cheap
source of protein. Fish and fish products constitute an important part in the international
trade; more than 50 billion fish are eaten annually indicating increasing consumer interests in
the commodity (Wafaa et al., 2011). In Africa, as much as 5 % of the population depends
partly or wholly on fish for their livelihood. Aquaculture has become one of the fastest
developing source of animal protein to humans and animals due to dwindling wild fish stocks
around the world and in particular Ghana. In Nigeria, the rearing of African cat fish is
Unfortunately, most of these are obtained through naturally occurring fish from the wild and
partly through fish importation. Generally, fish are good sources of vitamins B12 and B6, it is
also a good source of fluorine and iodine which are needed for development of strong teeth
and the prevention of goiter in man (Adebayo-Tayo et al., 2012). Economic studies have
demonstrated that fish farming in Africa can be a good source of income. Fishery products
are important not only from a nutritional point of view, but also as an item of international
trade and foreign exchange earner for a number of countries in the world. Nigeria is the
largest African aquaculture producer with over 600,000 metric tonnes a year. Egypt with over
400,000 metric tonnes follows Nigeria, and then there are only five other countries (Zambia,
Madagascar, Togo, Kenya and Sudan) that each produce more than 100,000 metric tonnes
Aquaculture has been practiced successfully in different holding structures ranging from
Ponds: A pond is a controlled pond, artificial lake, or reservoir that is stocked with fish and
is used in aquaculture for fish farming, or is used for recreational fishing or for ornamental
purposes. Mostly earthen ponds are used for culture of carps, tilapia, catfishes and sea bass
(Ozigbo, 2014).
Auxiliary Ponds: These include ponds for segregation of food stock, spawning ponds, Fry
nursing ponds, Fry holding ponds, Storage ponds for marketable fish, Overwintering ponds.
They usually much smaller ponds and may serve different functions in different seasons as,
the same pond can be exploited for carp spawning in the spring, fry nursing in the summer,
fish retention in the fall, and fry overwintering in the winter. Often, 85% of the farm's total
pond area is made up of growing ponds, while 15% is made up of auxiliary ponds (Magdy,
2016).
Raceways: One of the pioneering techniques for inland aquaculture is raceway systems. A
raceway generally contains either concrete canals or basins that are rectangular in shape and
have an inlet and outflow. A continuous water flow through is maintained to provide the
required level of water quality, which allows animals to be cultured at higher densities within
sequential blocks with two to three raceways sets in series. Typically, it is about 30×3×1 m
they may be smaller or larger having fast water flow rates (Magdy, 2016).
Tanks: However, fish farming can be done in concrete or plastic tanks that may be indoor or
outdoor. Small tanks (made of glass or plastic) or huge fiberglass tanks can be utilized as
tanks. Although production tanks come in a variety of sizes and shapes, round tanks with
capacities of 5,000 to 10,000 liters are the most widely used (ALSS, 2013). Tanks must be
bottoms on smooth circular tanks are thought to be useful because they help with the release
of waste materials during draining. Water enters the tank through pumps in a way that causes
a circular circulation within, and it exits through the center of the tank through a drain pipe or
a bottom drain that is encircled by screen. Draining out is designed to occur through a central
outlet made up of a drain pipe that is enclosed by screen. Security is much easier with a tank
system because production is concentrated on a small site, which can completely fence in
(Magdy, 2016).
Floating Cages: This refers to the rearing of fish animals in floating cages with a net
suspended below, within barriers in natural waterways. They could be circular, square, or
rectangular. To keep fish confined and safe until they can be harvested, fish cages are
installed in lakes, bayous, ponds, rivers, and oceans. When the cages are submerged beneath
the water, the method is also referred to as "off-shore cultivation." When they reach market
size, they are taken 9 after being artificially fed and maintained in cages. Several ecosystems,
including rivers and streams, saltwater estuaries, and coastal marine zones, are implementing
open systems. The size of floating mesh cages, which are anchored to the ocean floor, varies
Pens and Net Enclosures: In shallow water, usually in ponds, pens and net enclosures
(hapas) are used to establish a restricted environment for the culture of fish and some
crustaceans. They are usually not really big, measuring only a few tens of square meters or
fewer. Tightly packed stakes, such as bamboo stems or mangrove branches, or wire and other
mesh can serve as the enclosures' walls. M most of these cultures are practiced in
walls is an interesting exception to the shallow water pen. These pens are high enough to
keep the scallops from swimming over the wall. They could use floats to allow the mesh to
move with the tide. Haps are net enclosures made of fine nylon, plastic mosquito netting, or
cotton mesh. Harvesting is much easier with haps because the fry cannot escape. Haps can be
any manageable size ranging from 140 m3 to 1-2 m in depth and suspended on poles. Simple
squares or rectangles can be used. There are also more complex designs, such as those that
(a) Feed
Depending on the culture technique utilized, feed plays a different role in aquaculture
productivity. The principal source of waste in aquaculture systems has been recognized as
feed (Martins et al., 2010; Akinwole et al, 2016). The amount of extra feed has an impact on
the amount of fish feed waste produced. Nutrient content, manufacturing method (extruded
vs. pelleted), feed size to fish size ratio, quantity of feed per unit time, feeding method, and
storage period are just a few of the variables that affect waste formation from feed (Miller &
Semmens,2012).
(b) Chemicals
Chemical use in fish farms is strictly limited in current aquaculture practices; however, some
chemicals are still used in the form of medications, disinfectants, and antifoulants. Antibiotics
are used for prophylaxis and curative purposes are anesthetics, ectoparasiticides,
endoparasiticides, and vaccines, which are used for the treatment and control of parasites
(internal and external), as well as microbial infections (Dauda et al., 2018). Salts are
primarily used to reduce stress in fish, while lime is used to treat pond bottoms for acidity
during pond preparation, and other chemicals that are not harmful to fish are also used.
Although these chemicals are beneficial to fish culture, they may also be harmful to humans.
As the water is released from the ponds, it flows into natural water bodies. The effect of these
chemical wastes upon these natural water systems depends on the concentration of chemicals
used, the farm size, and the size of the receiving water bodies.
(c) Pathogens
This group of waste is rarely considered in aquaculture systems, especially when it is below
the level that affects the cultured fish. However, discharging pathogens with the wastewater
may negatively affect the aquatic organisms in the natural water bodies. Natural water bodies
have their own pathogenic load and receiving additional loads from fish culture systems may
cause stress or the outright death of aquatic organisms. The discharge of pond effluent is
rampant in semi-intensive pond aquaculture, which is more common in Africa, where organic
fertilizers used in aquaculture resulted in a high level of pathogens. Four organic fertilizers
(blood cow waste, cow manure, pig manure, and poultry manure) contribute to a high level of
The physicochemical characteristics of wastewater that are of special concern are pH,
dissolved oxygen (DO), oxygen demand (chemical and biological), solids (suspended and
dissolved), nitrogen (nitrite, nitrate and ammonia), phosphate, and metals. The hydrogen-ion
concentration is an important quality parameter of both natural and waste waters. It is used to
describe the acid or base properties of wastewater. A pH less than 7 in wastewater influent is
an indication of septic conditions while values less than 5 and greater than 10 indicate the
concentration range for the existence of biological life is quite narrow (typically 6-9). An
Unlike organic pollutants, they cannot be degraded, but accumulate throughout the food
chain, producing potential human health risks and ecological disturbances. Their presence in
industrial discharges. The accumulation of these metals in wastewater depends on many local
factors, such as the type of industries in the region, way of life and awareness of the impact
on the environment through the careless disposal of wastes (Hussein et al., 2015; Silvia et al.,
2016).
Municipal wastewater contains the most common types of microorganisms, including viruses,
bacteria, fungus, protozoa, and helminthes. Although different aquatic microbes are thought
to have a significant part in a number of waterborne epidemics, including pneumonia,
diarrhea, meningitis, degenerative heart disease, and stomach ulcers, they also have a number
dissolved organic matter is often removed using microorganisms. The microorganisms are
utilized in fixed film systems, suspended film systems, or lagoon systems depending on the
treatment plant's preference. Their presence can promote solids breakdown, resulting in
decreased sludge generation, during the various treatment phases. Aside from solid reduction,
wastewater microbes also recycle nutrients such as phosphate, nitrogen, and heavy metals. If
nutrients trapped in dead materials are not broken down by microbes, they will never be
available to help other organisms survive. Microorganisms are also in charge of detoxifying
acid mine drainage and other toxins in wastewater. Microbial pollutants can also be used as
water quality indicators. Detecting, isolating, and identifying various types of microbial
pollutants in wastewater is always difficult, expensive, and time consuming. In order to avoid
this, indicator organisms are always used to assess the relative risk of the presence of a
For instance, enteric bacteria, such as coliforms, Escherichia coli, and faecal Streptococci are
bacteriophages (somatic and F-RNA coliphages) are used. Also, Clostridium perfringens, a
faecal spore-forming bacterium, which is known to live longer in the environment and
protozoa or even helminthes eggs. Furthermore, diatoms are used to indicate the general
quality of water with respect to nutrient enrichment, and they provide valuable interpretations
with respect to changes in water quality, such as turbidity, conductivity, COD, BOD and
Generally, wastes from aquaculture can be classified into solid wastes, dissolved wastes and
microbial waste.
Solid wastes are primarily derived from the uneaten feed and fecal droppings of cultured fish.
They occasionally include those fish that do not survive the culture process. Solid wastes can
be further classified as suspended solids and settled solids. The suspended solids are fine
particles and remained suspended in the water, except when a method of coagulation or
sedimentation is employed, and are the most difficult type of solids to remove from culture.
Solid wastes have been classified as the most dangerous waste in fish culture systems and
should be effectively removed as quickly as possible. Solid wastes are regarded to be very
dangerous because they can clog the fish gills and lead to death, especially in the case of
large settled particles as they increase the nitrogenous compounds and stress the cultured fish
Dissolved wastes are products of food metabolism in fish or decomposed, uneaten feed. In
dissolved wastes, the two major components of concern are nitrogen (N) and phosphorus (P)
products. These two elements constitute important components of protein, which is the main
component of fish feed. Fish, irrespective of species, require a high dietary crude protein
ranging from 25 to 50%. The high protein fish feeds contain high amounts of nitrogen and
phosphorus, yet less than 50% of these potential water pollutants (nitrogen and phosphorus)
are retained in the body of the fish (Piedrahita, 2013). Hence, a large percentage is transferred
into the culture water, where it becomes a nuisance, and, when finally released, have a lot of
environmental impacts. The nitrogen is mainly excreted in dissolved form as ammonia, while
fish are more tolerant than cold water fish, while adult fish are more tolerant than the
The fish, their biotic and abiotic environments are inextricably linked, and changes in one
may reflect and affect the other (Wurt, 2000). Many microorganisms in pond water or water
used in intensive fish rearing could be pathogenic or opportunistic pathogens to fish, humans,
and planktons (Zmyslowska et al., 2003). These contaminating microorganisms have been
linked to poor water quality, which can be traced back to contaminated water sources and
high stocking densities (Sule et al., 2016). Water sources for earthen ponds are typically
untreated surface water runoffs from streams, rivers, lakes, and stored waters, whereas most
concrete ponds use an underground water source. Water is pumped from underground
sources, such as a well, and stored in a storage tank, which is used to refill the ponds when
the water needs to be changed every 3-5 days. The fish feed used in these ponds contains
According to Omojowo & Omojasola (2013) isolated six bacterial pathogens from cow dung
used as feed in the fish pond: E. coli, E. coli 0157:H7, Shigella dysenteriae, Staphylococcus
aureus, Salmonella typhi, and Aeromonas hydrophila. A cultivated fish's microbial flora
Freshwater fish in ponds commonly suffer from bacterial diseases such as various kinds of
primarily caused by Aeromonas sp. and Pseudomonas sp. Some of these diseases were
reported to be most severe during the dry season, when declining water quality is a problem.
In Arizona, significant mortalities of cultured tilapia resulted from infection with a salt-
tolerant strain of the bacterium Aeromonas hydrophilia. Some prevalent pathogenic bacteria
of milkfish and tilapia isolated in Taiwan include species of the genera: Aeromonas,
The quality of wastewater effluents is responsible for the degradation of the receiving water
bodies, such as lakes, rivers, streams, etc. The potential deleterious effects of polluted
wastewater effluents on the quality of receiving water bodies are manifold and depend on
volume of the discharge, the chemical and microbiological concentration/ composition of the
effluents. It also depends on type of the discharge for example whether it is amount of
suspended solids or organic matter or hazardous pollutants like heavy metals and
organochlorines, and the characteristics of the receiving waters (Owili, 2003). Eutrophication
of water sources may also create environ- mental conditions that favour the growth of toxin-
producing cyanobacteria. Chronic exposure to such toxins produced by these organisms can
cause gastro- enteritis, liver damage, nervous system impairment, skin irritation and liver
cancer in animals (EPA, 2000; Eynard et al., 2000; WHO, 2006). In extension, recreational
water users and anyone else coming into contact with the infected water is at risk (Resource
Quality Services, 2004). The potential deleterious effects of pollutants from sewage effluents
on the receiving water quality of the coastal environment are manifold and depend on volume
of the discharge, the chemical composition and concentrations in the effluent (Owili, 2003).
Diseases caused by bacteria, viruses and protozoa are the most common health hazards
associated with untreated drinking and recreational waters. The main sources of these
microbial contaminants in wastewater are human and animal wastes (WHO, 2006). These
contain a wide variety of viruses, bacteria, and protozoa that may get washed into drinking
water supplies or receiving water bodies (Kris, 2007). Microbial pathogens are considered to
in wastewater can cause chronic diseases with costly long-term effects, such as degenerative
heart disease and stomach ulcer. The density and diversity of these pollutants can vary
depending on the intensity and prevalence of infection. The detection, isolation and
identification of the different types of microbial pollutants in wastewater are always difficult,
expensive and time consuming. To avoid this, indicator organisms are always used to
determine the relative risk of the possible presence of a particular pathogen in wastewater
(Paillard et al., 2005). Viruses are among the most important and potentially most hazardous
pollutants in wastewater. They are generally more resistant to treatment, more infectious,
more difficult to detect and require smaller doses to cause infections. Because of the
difficulty in detecting viruses, due to their low numbers, bacterial viruses (bacteriophages)
have been examined for use in faecal pollution and the effectiveness of treatment processes to
Bacteria are the most common microbial pollutants in wastewater. They cause a wide range
of infections, such as diarrhea, dysentery, skin and tissue infections, etc. Disease-causing
bacteria found in water include different types of bacteria, such as E. coli O157:H7; Listeria,
vast quantities of bacteria, most of which are harmless to man. However, pathogenic forms
that cause diseases, such as typhoid, dysentery, and other intestinal disorders may be present
in wastewater. The tests for total coliform and faecal coliform nonpathogenic bacteria are
used to indicate the presence of pathogenic bacteria (EPA, 1996; APHA, 2001).
many of which have endocrine-disrupting properties. Reports have shown that exposure to
wastewater treatment effluents containing estrogenic chemicals can disrupt the endocrine
functioning of aquatic life, thus can cause permanent alterations in the structure and function
of the reproductive system (Liney et al, 2006). Evidence obtained from laboratory studies has
reportedly been observed in mammals, birds, reptiles, fish, and mollusks from Europe, North
America, and other areas. The observed abnormalities in these groups of animals vary from
feminized or masculinized sex organs, changed sexual behavior, and altered immune function
(Vos et al., 2000). While multiple laboratory studies have shown the effects of such
Water in catfish ponds usually has higher concentrations of nitrogen, phosphorus, organic
matter and biochemical oxygen demand than natural surface waters in the vicinity.
Concentrated aquatic animal production (CAAP) facilities such as hatchery and fish ponds to
mention few are major sources of wastewater effluent that contain high level of oxygen
demanding waste, producing objectionable odor in the receiving adjacent streams which most
fish farmer consider an ease waste disposal method. However, indiscriminate disposal of
untreated wastewater from fish pond on streams results in over- enrichment of water body
with nutrients causing eutrophication harmful to the aesthetic value of water body, preventing
sunlight penetration and decay of algae weeds which add odorous compound to the aquatic
Wastewater treatment is a process to renovate wastewater before its reuse or discharge. The
goal is to reduce or remove organic matter, solids, nutrients, disease causing organisms and
other pollutants from wastewater. A number of physical, chemical, and biological methods
used in wastewater treatment have been applied in aquaculture systems (Cao and Wang,
2010).
Mechanical filtration can remove suspended solids as well. There are several types of
filtration, including drum filtration, screen filtration, and sand filtration. These filters have
mesh sizes as small as 40 um, but due to the large amount of wash water required, filters with
mesh sizes of 70 um or larger are usually preferred. Small suspended solids tend to
accumulate in recirculating systems despite these highly improved filtration methods (Cao
and Wang, 2010). Small suspended solids can be removed using either chemical or biological
air-stripping, it can remove and separate soluble organic substances and suspended solids
inside the rising air bubbles. Foam fractionation can prevent accumulation of the toxic
(b) Aeration
Aeration is widely used in most rural areas of China to provide oxygen to the effluent being
treated as well as to remove odorous gases from bottom sediment. Some methods for
bringing water into contact with air include allowing it to fall down a set of steps, splashing
and breaking up into films and drops; spraying it into the air; and blowing or drawing air
bubbles through it. Pumping by air lift has a minor aerating effect. After exchanging the
oxygen-rich surface water with the pond's bottom water, some organic-rich sediment could be
effectively decomposed.
Chemical removal is a wastewater treatment method that involves the addition of chemicals
to form particles that settle and remove contaminants. Chemical treatment is still an important
part of many wastewater treatment plans. The general goals of chemical treatment are as
chlorination, chloramination, ozonation, and ultraviolet light (UV) are the most commonly
used chemical treatment methods (Gray, 2015). Flocculation reduces pathogen levels while
also removing particles that could protect pathogens from chemical or thermal destruction, as
well as organic matter that could wind up chlorine added for purification (Akpor, 2011).
Adding coagulation chemicals such as alum will then increase the rate at which the
suspended particles settle out by combining many smaller particles into larger floc which will
settle out faster. In bulk water treatment, the alum dose is varied until the required dose is
relatively long contact time, because of its high oxidation potential, it is still a disinfectant of
choice. However, chlorine does not only disinfect, but also rapidly reacts with contaminants
such as NH4+, NO2-, H2S, Fe2+ and other organic compounds, thus leading to the formation
trihomethanes but because of their relatively longtime after discharge to receiving water
with high organic compounds (Tchobanoglous and Kreith, 2016). Ozonation is primarily
high cost and lack of maintenance. Because there is always the possibility of microbial re-
growth in the water after treatment. UV and chlorine have been shown to be effective in
wastewater disinfection. Ultraviolet light does not produce toxic byproducts, and its faecal
indicators are extremely sensitive. Its drawbacks are that it is costly, increases the volume of
sludge produced, and usually results in sludge with poor dewatering and settling
characteristics. The main advantages of chemical treatment over biological processes are:
Adedayo and Anthony, (2014), carried out a study on Bacteriological study of pond water for
aquaculture purposes, two objectives guided the study. Bacterial isolated were purified into
pure culture and identified base on their morphological, cultural and biochemical test using
standard microbiology procedure. This study shows diversified forms of bacterial species
populating the pond water sources. This includes Staphylococcus spp., Streptococcus spp.,
Bacillus spp., Pseudomonas spp., E. coli, Enterobacter spp., Proteus spp., Citrobacter spp.
and others.
Njoku, Agwa, and Ibiene, (2015), carried out an investigation on the microbiological and
physicochemical profile of some fish pond water within the Niger Delta region of Nigeria.
The mean total heterotrophic bacteria count was higher in concrete ponds (6.5x10 5 to 7.4x105
cfu/ml) than (6.3x105 to 6.5x105 cfu/ml) in earthen pond and the total coliform was higher in
earthen pond (7.3x107 to 2.3x107 cfu/100ml) than concrete pond (5.9x10 7 to 2.1x107
cfu/100ml). The study revealed that the ponds were grossly contaminated with pathogenic
microorganisms which poses a risk to human health, thus of significant public health concern.
Ogeneogaga, and Solomon, (2017), carried out study on Physico-Chemical and
bacteriological Investigation of Selected Fish Pond in Kuje Area Council, Nigeria, to evaluate
the water quality of the ponds. The frequencies of occurrence of isolated bacterial species
were as follows: E. coli 25%, Flavobacterium spp. 16.7%, Staphylococcus spp. 16.7%.
Bacillus spp. 16.7%, Psuedomonas spp. 8%, Samonella spp. 8%, and Bacillus cereus 8%.
The presence of this organism show a lack of tentative pond management services which
could be harmful to fishes and humans. There is therefore a need to monitor water quality and
detect the actual source of contamination and subject the water through a form of treatment to
The study was carried out in Calabar Metropolis to determine the bacteriological quality of
The fish pond wastewater was collected at 13 different locations in Calabar metropolis; all
sample were collected with their control. The fish pond wastewater samples were collected at
15cm deep into a sterile container and labelled correctly. The samples were covered and
bacteriological analysis.
All media were aseptically prepared according to the manufacturer instructions. The media
used were Nutrient Agar, Macconkey Agar, Simmons Citrate Agar, and Peptone water.
Preparation of Nutrient Agar: 5.6g of Nutrient agar powder was weighed and mixed into
280ml of distilled water in a 500ml conical flask. The content of the flask was rotated and
heated for proper dilution of the media. The flask was covered with cotton wool, wrapped
firmly with aluminum foil and autoclaved at 121 0C for 15minutes. It was allowed to cool at
450C before it was dispensed aseptically in 20ml volume of petri dishes. The medium was
Preparation of Macconkey Agar: 25.4g of Macconkey agar powder was weighed and
mixed into 1274ml of distilled water in a 1000ml and 300ml conical flask. The content of the
flask was rotated and heated for proper dilution of the media. The flask was covered with
cotton wool, wrapped firmly with aluminum foil and autoclaved at 121 0C for 15minutes. It
was allowed to cool at 45-500C. It was mixed well before pouring into sterile petri dish of
20ml volume and the medium was allowed to gel on the petri dishes.
Preparation of Citrate Agar: 3.1g of Citrate Agar powder was weighed and mixed into
629ml of distilled water in a 1000ml conical flask. The content of the flask was rotated and
heated for proper dilution of the media. 5ml of the dissolved media was dispense into
different test tubes under aseptic conditions; plugged firmly with cotton wool and wrapped
with foil paper, it was then autoclave at 121 0C for 15minutes. It was then removed, slanted
1ml of each sample was added to first 10ml of sterile distilled water in test tube and mixed
gently. 1ml of the dilution was serially diluted to obtain 10 -1 dilution factor. 0.5ml of 10-5 was
used for isolation of bacteria using the spread plate method. The plates were then incubated at
370C for 24 hours. After incubation bacteria counts were determined using colony count
Pure cultures were obtained by sub-culturing distinct colonies onto sterile nutrient agar plates
severally. The pure cultures obtained were then transferred onto agar slants in EDTA bottles
and incubated at 270C. The bottles are then stored in the refrigerator.
The bacterial species isolate was identified and also characterized after investigating their
characterization was based on the colony morphology which includes, colour elevation,
Gram Staining: A drop of distilled water was placed on a grease free slide and a fresh
culture of 24hrs was smeared on the slide with the aid of a sterile inoculating wire loop. The
smear was covered with crystal violent (primary stain) for 60 seconds. It was rapidly washed
off under running water for 5 seconds. The smear was covered with Lugol’s iodine (which
serves as mordant) after tipping off all the water. The Lugol’s was allowed to stand for 60
seconds, rinsed again in slowly running water. Alcohol which serves as decolorizer was drop
for 5 seconds and immediately rinsed off. The smear was covered with safranin reagent
(secondary stain) for 30 seconds. The slide was washed off slowly under running tap. Air
dried and then viewed/examined under the microscope using 100x objective oil immersion
lens. Gram Negative bacteria appeared purple or violet while Gram Negative Bacteria
Catalase Test: A 24 hour old culture was used to carry out the test. The sterile wire loop was
used to make a homogenous suspension on the slide. A drop of hydrogen peroxide (H 2O2)
was added to the suspension and the occurrence of effervescence indicate a Positive reaction
Oxidase Test: This test was carried out using freshly prepared oxidase reagent. After placing
filter paper in a clean petri dish, 2 to 3 drops of oxidase reagent (1% of aqueous solution of
tetra methyl phenylene diamine dihydrochloride) was placed on filter paper. With the aid of a
sterile wooden rod, a colony of each of the isolates was picked and smeared on the filter
paper in the petri dish. The development of blue-black colour within few seconds on filter
Citrate Utilization Test: This test showed the ability of some bacteria to utilize citrate as
their sole carbon source. Simmon’s citrate medium formulation includes sodium citrate as
sole source of carbon, ammonium phosphate as the sole source of nitrogen and the pH
indicator bromothymol blue. Slants of Simmon’s citrate were prepared in the test tubes
according to the manufacturer’s instruction. Using a sterile straight wire loop, the slants were
inoculated lightly and were incubated at 370C for 72 hours. Colour change (green to blue)
Indole Test: This test determines the ability of an organism to produce indole from the
three possible end products – one of which is indole, the others are pyruvate and ammonium
ion. Place several drops of indole spot reagent on a piece of filter paper, with an inoculating
loop or wooden applicator stick, pick a portion of a 24 hour isolated colony from a non-
selective media and rub it onto the reagent saturated area of the filter paper and examine
immediately. Pink or red colour indicate Positive result while no colour change indicate
negative result.
Motility Test: This test is to use determine if an organism is motile or non-motile. Pick a
1/3
pure colony of 24hrs and stab once to a depth of only to ½ inch in the middle of the tube.
Be sure to keep the needle in the same line it entered as it is removed from the medium.
Incubate at 35o – 37oC and examine daily for up to 7 days. Observe for a diffuse zone of
growth flaring out from the line of inoculation. Diffuse, hazy growths that spread throughout
the medium rendering it slightly opaque indicates Positive result while growth that is
confined to the stab-line, with sharply defined margins and leaving the surrounding medium
Coagulase Test: Coagulase test is used to differentiate staphylococcus aureus which convert
fibrinogen to fibrin (positive) from S. epidermis and S. saprophyticus (negative). A slide test
was carried out to determine bound coagulase. Place a drop of physiological saline on each
end of a slide, or on two separate slides, with the help of wire loop or wooden stick, emulsify
the isolated colony in each drops to make two thick suspensions. Add a drop of human
plasma to one of the suspensions, and mix gently. Look for clumping of the organisms within
This test is generally used for the identification of enteric bacteria. It is also used to
distinguish the Enterobacteriacieae, from other gram negative intestinal bacilli by ability to
catabolize, glucose, lactose or sucrose. About 65g of Triple sugar iron agar was weighted and
mixed into 100ml of distilled water in a conical flask and autoclaved at 121 0C for 1 hour. The
agar was poured into test tubes and slant them to solidify. With the aid of sterile wire loop a
loopfull of the organisms was picked from the stock cultures and inoculated by streaking on
The tubes were sealed with foil paper and incubated for 18 – 24 hours at 37 0C. After 24 hours
RESULT
Table 4.1 shows the results of the bacteriological analysis of 13 samples of fish farm effluent
at different location in the study area shows. The total heterotrophic bacterial count ranges
from 1.5x104 cfu/100 ml to 7.0x104 cfu/100ml, and total coliform from 1.6x104 cfu/100ml to
5.2x104 cfu/100ml. UNA sample had the highest value of the bacterial count of 7.0 x10 4 and
4.2 Morphological and biochemical characterization of bacterial isolated from fish farm
effluent
Based on the morphological and biochemical characteristics of bacteria isolated from fish
farm effluent as presented in table 4.2, the following bacteria were isolated; Staphylococcus
Proteus spp; Staphylococcus epidemidis. The isolates were differentiated on the basis of the
Table 4.3 shows the percentage of occurrence of bacterial isolate of 13 samples from fish
farm effluent in Calabar Metropolis. The organism with the lowest occurrence in the studied
samples was Enterococcus spp 7.6%, Klebsiella spp 11.5%, Pseudomonas aeruginosa 11.5%,
Staphylococcus epidermidis 11.5%, Staphylococcus aureus 15.3%, Proteus spp 19.5%, and
Total heterotrophic bacterial count and total coliform count (cfu/ml) x103
Note: NMSMA -Nelson Mandela Street, TFAD - Atakon Drive, EBIA- Eburutu Barrack
EISOM - Eteta Ita Street, UOPC- Umoa Okon, ABAC- Access by Atimbo, OIRM-98 Old
Ikang Road, OECM-8 Offiong Ekpo Close, AAA- Anatigha, UNA – Umo Orok, PAS- Palm
Street, ENI- Ene-Ita, AFJ- Afokang Jebs
Coagula
Oxidase
Possible
Motility
Catalas
organis
Citrate
Sample Gram
Indole
Shape Surface Colour Elevation
S/N stain
m
se
e
NMSMA Circular Smooth Creamy Raised +ve strep. - + - - - - Enterococcus spp.
TFAD Irregular Glistering Creamy Raised -ve rods - + - + - - Klebsiella spp.
EBIA Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
EISOM Circular Smooth Yellowish Raised -ve rods - - - + - + Staphylococcus aureus
UOPC Circular Smooth White Convex -ve rods + + + + - - Pseudomonas auruginosa
ABAC Contoured Smooth Creamy Flat -ve rods + - - + + - Proteus spp.
OECM Circular Smooth White Flat +ve rods - - + + - - Staphylococcus epidemidis
AAA Circular Smooth White Flat +ve rods - - + + - - Staphylococcus epidemidis
UNA Contoured Smooth Creamy Flat -ve rods + - - + + - Proteus spp.
UWU Circular Smooth White Convex -ve rods + + + + - - Pseudomonas auruginosa
PAS Circular Smooth Yellowish Raised -ve rods - - - + - + Staphylococcus aureus
ENI Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
AFJ Irregular Glistering Creamy Raised -ve rods - + - + - - Klebsiella spp.
NMSMA Circular Smooth Creamy Raised +ve strep. - + - - - - Enterococcus spp.
TFAD Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
EBIA Circular Smooth Yellowish Raised -ve rods - - - + - + Staphylococcus aureus
EISOM Circular Smooth White Convex -ve rods + + + + - - Pseudomonas auruginosa
UOPC Contoured Smooth Creamy Flat -ve rods + - - + + - Proteus spp.
ABAC Circular Smooth White Flat +ve rods - - + + - - Staphylococcus epidemidis
OECM Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
AAA Contoured Smooth Creamy Flat -ve rods + - - + + - Proteus spp.
UNA Circular Smooth Yellowish Raised -ve rods - - - + - + Staphylococcus aureus
UWU Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
PAS Circular Smooth Yellowish Flat -ve rods + + - + + - Salmonella spp.
ENI Contoured Smooth Creamy Flat -ve rods + - - + + - Proteus spp.
AFJ Irregular Glistering Creamy Raised -ve rods - + - + - - Klebsiella spp.
Table 4.2. Morphological and Biochemical characterization of Bacteria Isolated from Fish Pond Effluent
Table 4.3
Total 26 100
CHAPTER FIVE
5.1 Discussion
The bacteriological examination of fish pond effluent is important as this creates tentative
pond management services which could be harmful to fishes and humans. The results of the
bacteriological analysis of 13 samples of fish farm effluent at different location in the study
area shows the total heterotrophic bacterial count result ranges from 1.5x10 4 cfu/100 ml to
7.0x104 cfu/100ml, and total coliform from 1.6x104 cfu/100ml to 5.2x104 cfu/100ml. UNA
had the highest value of the bacterial count of 7.0 x10 4 and TFAD have the lowest coliform
count of 1.6 x104 which is the lowest. This result is in line with the study of Njoku, Agwa,
Based on the morphological and biochemical characteristics of bacteria isolated from fish
farm effluent, the following bacteria were isolated; Staphylococcus aureus; Enterococcus
spp; Klebsiella spp; Salmonella spp; Pseudomonas aeruginosa; Proteus spp; Staphylococcus
epidemidis. This findings is slightly similar to Ogeneogaga, and Solomon, (2017), who
reported the presence of E. coli, Flavobacterium spp., Staphylococcus spp., Bacillus spp.,
Psuedomonas spp., Salmonella spp., and Bacillus cereus in a similar study. Based on the
gram reaction of bacterial isolates, Gram negative bacteria dominated with the total of 5
Considering the prevalence of occurrence, Salmonella species had the highest prevalence of
occurrence while Enterococcus spp. had the least. The presence of the pathogenic organisms
such as Salmonella typhi, E. coli, Enterococcus spp. is an indication that the fish ponds were
This study suggests that there is need to monitor the quality of wastewater that is being
discharged from the fish ponds into the environment. Hence, its release and use should be
with caution and subjected to closer regulation by environmental, agricultural and health
physicochemical analysis of the discharged wastewaters from fish ponds be carried out
regularly for proper monitoring so as to prevent avoidable epidemics in the country. Good
quality waters such as well or borehole should be used in the fish pond rather than water from
questionable sources such as river, stream, and surface runoff. The installation of waste water
management techniques should be approved and enforced by the government on all fish farm
owners. Moreover, public awareness on the effects caused by the indiscriminate release of
fish ponds’ effluents into the surroundings should be organized for farmers especially those
in the rural areas. And Fish feeds should be obtained from reliable manufacturers to reduce
5.3 Recommendation
Based on the outcome of this study, the following recommendations were made:
1. The result showed that there was no fish pond water sample that was free from
bacteria and fungi, an indication that the entire fish pond water samples were
contaminated by microorganisms.
2. The contamination could have arisen from different sources which include air, source
of water and fish feeds could have been responsible for the introduction of these
organisms into the fish pond. Also, it was shown in this study that the gamma
3. Sanitary conditions under which fish are reared in ponds should be improved, by
following standard or good practices; such as use of good quality water, use of feeds
with high microbial quality, regular draining of pond water after specific period of
4. Good quality water such as borehole should be used in the fish pond rather than water
5. Waste water should be treated either by physical methods which involve filtration
through slow sand filters, rapid sand filters, sand-beds or chemical methods such as
addition of disinfectants e.g. chlorine before final disposal into surrounding drains.