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Advances in Experimental Medicine and Biology 931
Advances in Microbiology, Infectious Diseases and Public Health

Christine Imbert Editor

Fungal
Biofilms
and Related
Infections
Volume 3
Advances in Experimental Medicine
and Biology
Advances in Microbiology, Infectious Diseases
and Public Health

Volume 931

Editorial Board
Irun R. Cohen, The Weizmann Institute of Science, Rehovot, Israel
N.S. Abel Lajtha, Kline Institute for Psychiatric Research, Orangeburg, NY, USA
John D. Lambris, University of Pennsylvania, Philadelphia, PA, USA
Rodolfo Paoletti, University of Milan, Milan, Italy

Subseries Editor
Gianfranco Donelli, Microbial Biofilm Laboratory, Fondazione Santa Lucia
IRCCS, Rome, Italy
The Advances in Microbiology, Infectious Diseases and Public Health Series
will provide microbiologists, hygienists, epidemiologists and infectious
diseases specialists with well-choosen contributed volumes containing
updated information in the areas of basic and applied microbiology involving
relevant issues for public health, including bacterial, fungal and parasitic
infections, zoonoses and anthropozoonoses, environmental and food micro-
biology.The increasing threat of the multidrug-resistant microorganisms and
the related host immune response, the new strategies for the treatment of
biofilm-based, acute and chronic microbial infections, as well as the devel-
opment of new vaccines and more efficacious antimicrobial drugs to prevent
and treat human and animal infections will be also reviewed in this series in
the light of the most recent achievements in these fields.Special attention
will be devoted to the fast diffusion worldwide of the new findings of the
most advanced translational researches carried out in the different fields of
microbiological sciences, with the aim to promote a prompt validation and
transfer at clinical level of the most promising experimental results.The book
series publishes review and original research contributions, short (data)
reports as well as guest edited thematic book volumes. All contributions
will be published online first and collected in (thematic) book volumes.
There are no publication costs.This series is a subseries of Advances in
Experimental Medicine and Biology2014 Impact Factor: 1.958Advances in
Experimental Medicine and Biology has been publishing exceptional works
in the field for over 30 years and is indexed in Medline, Scopus, EMBASE,
BIOSIS, Biological Abstracts, CSA, Biological Sciences and Living
Resources (ASFA-1), and Biological Sciences.

More information about this series at http://www.springer.com/series/13513


Christine Imbert
Editor

Fungal Biofilms and


Related Infections
Advances in Microbiology,
Infectious Diseases and
Public Health Volume 3
Editor
Christine Imbert
University of Poitiers
Laboratory Ecology & Biology of Interactions
UMR CNRS 7267
Poitiers, France

ISSN 0065-2598 ISSN 2214-8019 (electronic)


Advances in Experimental Medicine and Biology
ISBN 978-3-319-42359-3 ISBN 978-3-319-42360-9 (eBook)
DOI 10.1007/978-3-319-42360-9

Library of Congress Control Number: 2016935504

# Springer International Publishing Switzerland 2016


This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or
part of the material is concerned, specifically the rights of translation, reprinting, reuse of
illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way,
and transmission or information storage and retrieval, electronic adaptation, computer software,
or by similar or dissimilar methodology now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc. in this
publication does not imply, even in the absence of a specific statement, that such names are
exempt from the relevant protective laws and regulations and therefore free for general use.
The publisher, the authors and the editors are safe to assume that the advice and information in
this book are believed to be true and accurate at the date of publication. Neither the publisher nor
the authors or the editors give a warranty, express or implied, with respect to the material
contained herein or for any errors or omissions that may have been made.

Printed on acid-free paper

This Springer imprint is published by Springer Nature


The registered company is Springer International Publishing AG Switzerland
Contents

Aspergillus Biofilms in Human Disease . . . . . . . . . . . . . . . . . . . . . 1


Craig Williams, Ranjith Rajendran, and Gordon Ramage
Candida albicans in Multispecies Oral Communities;
A Keystone Commensal? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Marleen M. Janus, Hubertine M.E. Willems, and Bastiaan P. Krom
The Extracellular Matrix of Fungal Biofilms . . . . . . . . . . . . . . . . 21
Kaitlin F. Mitchell, Robert Zarnowski, and David R. Andes
Fungal Biofilms: Update on Resistance . . . . . . . . . . . . . . . . . . . . . 37
Elisa Borghi, Francesca Borgo, and Giulia Morace
Fungi, Water Supply and Biofilms . . . . . . . . . . . . . . . . . . . . . . . . 49
Catherine Kauffmann–Lacroix, Damien Costa, and Christine Imbert
Diagnostic of Fungal Infections Related to Biofilms . . . . . . . . . . . 63
Maurizio Sanguinetti and Brunella Posteraro
Disinfectants to Fight Oral Candida Biofilms . . . . . . . . . . . . . . . . 83
M. Elisa Rodrigues, Mariana Henriques, and Sónia Silva
Updates on Therapeutic Strategies Against Candida
(and Aspergillus) Biofilm Related Infections . . . . . . . . . . . . . . . . . 95
Fuad Kamel Muakkassa and Mahmoud Ghannoum
Natural Sources as Innovative Solutions Against
Fungal Biofilms . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 105
Marion Girardot and Christine Imbert

Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 127

v
Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2016) 3: 1–11
DOI 10.1007/5584_2016_4
# Springer International Publishing Switzerland 2016
Published online: 7 June 2016

Aspergillus Biofilms in Human Disease

Craig Williams, Ranjith Rajendran, and Gordon Ramage

Abstract
The biofilm phenotype of Aspergillus species is an important and accepted
clinical entity. While industrially these biofilms have been used exten-
sively in important biofermentations, their role in clinical infection is less
well defined. A recent flurry of activity has demonstrated that these
interesting filamentous moulds have the capacity to form biofilms both
in vitro and in vivo, and through various investigations have shown that
these are exquisitely resistant to antifungal therapies through a range of
adaptive resistance mechanisms independent of defined genetic changes.
This review will explore the clinical importance of these biofilms and
provide contemporary information with respect to their clinical
management.

Keywords
Aspergillus biofilm • Filamentous moulds • Fungal infections •
Aspergillosis • Antifungal drugs

1 Introduction broad-spectrum antibiotics, and an aging and


more immuno-compromised patient population,
Fungal biofilms are an important clinical prob- has created an opportunity for yeasts and moulds
lem (Ramage and Williams. 2013). The wide- to form infections in the form of biofilms. This
spread use of indwelling medical devices, chapter will discuss the anatomical areas where
Aspergillus biofilms may be important and the
C. Williams (*) evidence that they exist and discuss the treatment
Institute of Healthcare Policy and Practice, University of of aspergillus infection.
West of Scotland, High St, Paisley PA1 2BE, UK A biofilm is composed of microorganisms
e-mail: craig.williams@uws.ac.uk
attached to surfaces or one another and enclosed
R. Rajendran and G. Ramage within an extrapolymeric matrix. The biofilm
Infection and Immunity Research Group, Glasgow Dental
mode of growth is the preferred form of growth
School and Hospital, School of Medicine, College of
Medical, Veterinary and Life Sciences, University of of microorganisms and accounts for up to 65 %
Glasgow, Glasgow, Scotland of all clinical infections. This mode of growth

1
2 C. Williams et al.

gives the organism a number of advantages antifungal agents. Within the biofilm there are a
including high level antimicrobial resistance range of niches and hypoxic areas, which influ-
which may cause problems for the clinician ence filamentation (Bonhomme et al. 2011).
attempting to treat such infections (Donlan and Flow of fluids across the surface of the biofilm
Costerton. 2002). Over recent years there has may then result in the dispersion of daughter
been a growing appreciation that pathogenic fun- cells, which attach to a new substrate and the
gal species both have the ability to form biofilms cycle starts again (Uppuluri et al. 2010). This
and that these biofilms may impact clinical prac- entire process is controlled by various transcrip-
tice (Ramage et al. 2009; Sayed et al. 2012; Fan- tion factors, such as Bcr1p, Ace2p, Efg1p and
ning and Mitchell. 2012; Williams and Ramage. Zap1p, which are involved in precisely regulated
2015). molecular pathways (Finkel and Mitchell 2011;
Fungi can be broadly divided into yeasts and Nobile et al. 2006; Zhao et al. 2006; Fanning
moulds. In terms of the number of infections, et al. 2012). The molecular biology of Aspergil-
C. albicans, a normal commensal of human lus biofilms is less well understood, but it is a
mucosal surfaces and opportunistic pathogen in rapidly developing area of microbiology
immunocompromised patients, is the most clini- (Beauvais et al. 2007; Bom et al. 2015; Gravelat
cally important of fungi species in terms of the et al. 2008; Gravelat et al. 2010; Mowat
production of clinically relevant biofilms. These et al. 2007; Ramage et al. 2011; Winkelstroter
biofilms have much in common with Aspergillus et al. 2015). Figure 1 illustrates the morphologi-
biofilms, which are the subject of this chapter. A cal complexity of these filamentous moulds.
candidal biofilm begins with yeast cells attaching
to a relevant surface using defined adhesins,
followed by the formation of a microcolony
2 Where May Aspergillus
with yeast cells undergoing morphological
Biofilms Be Important?
switching to pseudo- and true-hyphae, which
results in the rapid formation of a meshwork of
2.1 Upper Airways
hyphae interspersed with budding yeast cells
(Ramage et al. 2002). As the biofilm matures it
Sinusitis (or rhinosinusitis) is defined as an
becomes enclosed in a glucan rich polymeric
inflammation of the mucous membrane lining
matrix (Nett et al. 2010) which provides protec-
the paranasal sinuses. It may be acute or chronic,
tion from host defenses and treatment with
however, subacute and acute exacerbation of

Fig. 1 Scanning electron micrographs of biofilms formed by (a) an Aspergillus fumigatus and (b) an co-culture of
Aspergillus fumigatus and Staphylococcus epidermidis
Aspergillus Biofilms in Human Disease 3

chronic diseases has also been described and as however that fungal biofilms present in the lung
all types have similar symptoms it is often clini- may also contribute to infection.
cally difficult to distinguish these. Around ninety Filamentous fungi, mainly A. fumigatus, may
percent of adults have had some symptoms of cause a spectrum of respiratory disease including
sinusitis at some time. There is a growing appre- a discrete lesion in a pre-existing cavity,
ciation that chronic rhinosinusitis is typified by aspergilloma, wheezing mediated by an immune
biofilm growth (Foreman et al. 2011; Keir response, allergic bronchopulmonary aspergillo-
et al. 2011; Ebbens et al. 2009a). While there is sis (ABPA) and invasive aspergillosis
increasing evidence for the role of bacterial (IA) (Denning. 1998). A bronchopulmonary
biofilms in this infection, there role of fungi lavage (BAL) of these individuals often reveals
remains controversial. (Ebbens et al. 2009b). the presence of numerous intertwined hyphae in
Paranasal sinus fungus balls have been described the form of a complex multicellular structure
(Grosjean and Weber. 2007; Karkas et al. 2013), when examined histologically (Jayshree
which share some of the features of fungal et al. 2006), this is indicative of a biofilm pheno-
biofilms (Harding et al. 2009; Mowat type (Harding et al. 2009; Mowat et al. 2008a, b).
et al. 2008a, b). In a recent study of 118 patients The recently described Aspergillus bronchitis
with chronic sinusitis, nasal discharge, headache may also be biofilm associated and is
and visual disturbance, over a 14 year period characterized by bronchial casts containing
23.7 % had a sphenoidal fungus ball in which mycelia forming compact masses (Young
Aspergillus fumigatus and Aspergillus nidulans et al. 1970). It is clear that Aspergillus species
hyphae were observed microscopically (Karkas form medically important biofilms (Ramage
et al. 2013). In terms of infections associated et al. 2011; Gutierrez-Correa et al. 2012) and
with foreign bodies A. fumigatus infection within understanding their clinical role in is crucial, as
the maxillary sinus associated with a zygomatic with all biofilms, these structures are highly
implant has been reported (Sato et al. 2010). resistant to antifungal therapy (Mowat
Experimental studies have shown that et al. 2008a, b; Seidler et al. 2008).
A. fumigatus biofilms form in a primary human Infection in CF patients is also commonly
sinonasal epithelial model (Singhal et al. 2011) associated with S. aureus and Haemophilus
and in a sheep model of induced sinus biofilms influenzae, and recent advances in culture-
A. fumigatus readily forms biofilms often independent, next generation sequencing
associated with Staphylococcus aureus (Boase technologies, have revealed that the microbiome
et al. 2011). These data suggest that fungal of the CF lung is much richer than previously
biofilms, alone or more likely in mixed species appreciated comprising of a diverse range of
biofilms with other organisms, may play a role in bacterial and fungal pathogens, of which
sinus infection however there is little evidence to A. fumigatus is the most prevalent filamentous
support the role of fungi in other upper airway fungi (Ramage et al. 2011). A. fumigatus has a
biofilm infections such as otitis media (Bakaletz. prevalence rate of between 10 and 57 % (Pihet
2007; Martin et al. 2005; Yao and Messner et al. 2009; Bauernfeind et al. 1987), though
2001). other fungi have been isolated from the lungs
including, Scedosporium species, Aspergillus
niger, Aspergillus flavus, Aspergillus nidulans,
Aspergillus terreus (Sudfeld et al. 2010; Cimon
2.2 Lower Airways
et al. 2003). Lungs of CF sufferers are lined with
a thick viscous mucus layer susceptible to
Lower respiratory tract infection may be due to
polymicrobial infections, leading to recurrent
biofilm infection, the archetype of which is Pseu-
infections and continuous inflammation (Rowe
domonas aeruginosa in cystic fibrosis patients
et al. 2005). The interplay between the pathogens
(Singh et al. 2000). It is also now recognised
residing in the lung may be responsible for the
4 C. Williams et al.

acute exacerbations associated with CF, where understood and requires further investigation
the balance is tipped towards an environment into their polymicrobial interactions. Indeed,
with excess inflammatory, oxidative and proteo- these studies highlight potential battles going on
lytic activity. Several studies have identified an within a polymicrobial environment such as the
association between A. fumigatus and CF lung, which plays a crucial role in the overall
P. aeruginosa, whereby co-infection saw pathogenesis of disease (Peters et al. 2012),
decreased pulmonary function in comparison to exemplified by studies in a Drosophila model of
those with a mono-infection (Amin et al. 2010), a polymicrobial infection in which
phenomenon also reported with Candida species microorganisms from CF showed a different out-
and P. aeruginosa (Chotirmall et al. 2010). Evi- come depending on the presence or absence of
dence is therefore increasing for the improved P. aeruginosa (Sibley et al. 2008a, b). Collec-
clinical management of these patients (Delhaes tively, these provide evidence for the need to
et al. 2012). Indeed, interkingdom interactions of consider earlier use of antifungals to improve
the CF lung, and elsewhere, may lead to adverse clinical management of these patients (Delhaes
clinical outcomes (Leclair and Hogan 2010). The et al. 2012).
ability of these microbes to form strong mixed
species biofilms likely contributes towards their
persistence, making it extremely difficult to erad- 3 Wounds
icate the infection (Seidler et al. 2008; Lutz
et al. 2012). P. aeruginosa has also been shown Non-healing wounds, such as diabetic foot ulcers
to inhibit A. fumigatus filamentation via the (Seth et al. 2012) represent a significant clinical
release of molecules involved in intra-cellular burden to patients, and are associated with the
communication (Mowat et al. 2010). presence of microbial biofilms. S. aureus and
Investigations into the interactions between P. aeruginosa are often isolated together in
these two are limited, however the release of these patients and have been shown to have a
small molecules designed to inhibit fungal non-random association within the wound site
growth appear to be the primary form of interac- (Fazli et al. 2009). Evidence is emerging that
tion. One particular group of metabolites known pathogenic fungal species may play a role in
as phenazines, have been reported to inhibit these infections (Branski et al. 2009).
A. fumigatus biofilm formation, however it was Wounds acquired in combat situations espe-
also found that A. fumigatus was able to convert cially with persistent evidence of wound necrosis
these metabolites released by P. aeruginosa to often contain fungi with mould isolates found in
produce fungal siderophores, which may in turn 83 % of cases (Mucorales, n ¼ 16; Aspergillus
influence CF progression (Moree et al. 2012). spp, n ¼ 16; Fusarium spp, n ¼ 9), commonly
Furthermore, P. aeruginosa releases the with multiple mould species among infected
metalloprotease elastase, which has been shown wounds (28 %). Clinical outcomes included
to be toxic to host cells (Smith et al. 2015). It was 3 related deaths (8.1 %), frequent debridements
found that elastase production was constitutive, and amputation revisions (58 %) (Warkentien
but became significantly increased in the pres- et al. 2012).
ence of A. fumigatus during biofilm co-culture. A next generation sequencing approach to
Furthermore, elastase was cytotoxic to human venous leg ulcers reveals that C. albicans,
lung adenocarcinoma cells, and therefore the C. glabrata and Aspergillus species are present,
presence of both of these pathogens could con- but intriguingly the authors report that
tribute towards enhanced pathogenicity (Smith individuals seem to have unique microbial
et al. 2015). Thus, in general, evidence suggests profiles, (Wolcott et al. 2009). A further retro-
that the co-isolation of both of these organisms spective molecular analysis of 915 chronic
indicates a poorer prognosis; however the rela- wound infections, pressure ulcers, diabetic foot
tionship between the two remains poorly ulcers, non-healing surgical wounds and venous
Aspergillus Biofilms in Human Disease 5

leg ulcers, showed that 208 (23 %) of these deemed failures and an alternative regimen used.
contained pathogenic fungi (Dowd et al. 2011). Micafungin, Caspofungin Liposomal
Yeasts were the most abundant fungi (Candida Amphotericin and Amphotericin B (AmB)
spp.), but Aureobasidium, Cladosporium, deoxycholate are also recommended.
Curvularia, Engodontium, Malessezia, For Invasive aspergillus three major sets of
Trichtophyton, and Ulocladium were also pres- guidelines are available, ECIL (Maertens
ent. Overall, fungal species represented over et al. 2011), ESCMID (Ullmann et al. 2012),
50 % of the microbial burden in the majority of and IDSA (Walsh et al. 2008). Again, none spe-
specimens examined but direct evidence that the cifically reference the presence of biofilm and
fungi were present as biofilms is lacking. they all recommend either azoles, AmB or
echinocandins with different grades of evidence.
A useful review by Leroux and Ullmann (2013)
4 Medical Devices highlight the methodological differences
between these studies and tabulates the
Broad-spectrum antibiotics, parenteral nutrition, recommendations (Leroux and Ullmann 2013).
immuno-suppression due to chemotherapy and So when considering aspergillus infection it is
radiotherapy, and disruption of mucosal barriers clear that AmB, including a variety of lipid
due to surgery, are among the most important formulations and members of the azole class,
predisposing factors for invasive fungal infection which includes fluconazole, itraconazole,
(Odds 1988). Candida species predominate and voriconazole (VRZ) and posaconazole, are effec-
are the fourth most common cause of blood- tive in the treatment of invasive aspergillosis
stream infection in patients requiring intensive (IA) and are the mainstay treatment for the dis-
care and the most common etiologic agent of ease (Denning et al. 1989; Oren et al. 2006; Raad
fungal related biofilm infection. However, other et al. 2008; Sambatakou et al. 2006).
filamentous fungi biofilm related infections have One consideration in the choice of treatment
also been increasingly described, including is the presence of triazole resistance. High rates
Aspergillus (Escande et al. 2011). Aspergillus of triazole resistance in A. fumigatus were first
species have been reported to cause serious bio- reported in the Netherlands and in the
material related biofilm infections, involving UK. Subsequently the rate of triazole resistance
catheters, joint replacements, cardiac pace in A. fumigatus has been reported in Europe at
makers, heart valves, and breast augmentation rates from 1.7 to 29.6 %. More worrying is a
implants (Escande et al. 2011; Langer reported increase in the yearly rate of resistance
et al. 2003; Rosenblatt and Pollock 1997; Jeloka by 6 % per annum in patients without prior expo-
et al. 2011; Golmia et al. 2011). Fungal biofilms sure to antifungal therapy (Goncalves
are also associated with building fabrics and hos- et al. 2016).
pital infrastructure (Short et al. 2011; Siqueira Although the triazoles have proven efficacy
et al. 2011; Richardson 2009; Anaissie with good safety profiles, they have been shown
et al. 2002). to be associated with resistance through their
continuous use (Howard et al. 2009; Meneau
et al. 2005; Mosquera and Denning 2002).
5 Antifungal Treatments Azoles actively target the 14-α-demethylase
enzyme, blocking ergosterol biosynthesis and
Guidelines exist for a number of Aspergillus destabilizing the cell membranes of actively
infections. The guidance for Chronic Pulmonary growing cells. Mutations within the ergosterol
aspergillosis (Denning et al. 2016), which does biosynthesis pathway have been reported to
not mention biofilms, recommends, a minimum cause azole cross-resistance through mutations
of 4–6 months oral triazole therapy initially and within the cyp51A gene (Howard et al. 2009;
patients who deteriorate in this period should be Mellado et al. 2007; Snelders et al. 2008;
6 C. Williams et al.

Snelders et al. 2010). However, a recent study which was coincidental with a strain-dependent
reported that 43 % of azole-resistant isolates did increase in azole resistance. This demonstrates
not carry the cyp51A mutation, indicating that that efflux pumps are expressed in complex
other mechanisms of resistance were responsible A. fumigatus biofilm populations and that they
(Bueid et al. 2010). In addition to this mechanism contribute to azole resistance. Moreover, VRZ
of resistance the presence of biofilm may require treatment induces efflux pump expression
consideration of other mechanisms of resistance (Rajendran et al. 2013).
(Ramage et al. 2011; Rajendran et al. 2013;
Ramage et al. 2012; Robbins et al. 2011).
7 Extracellular Matrix
6 Efflux Pumps
Biofilms are encased in an extracellular matrix
(ECM). In A fumigatus the ECM is composed
Azole resistance may be mediated by multidrug
mainly of polysaccharides, hydrophobin, and
resistance (MDR) pumps, which are involved in
melanin (Beauvais et al. 2014). This matrix is
the active extrusion of antimicrobial molecules,
considered to be an important virulence factor
including azole (Rajendran 2011). MDR efflux
and is also related to their high resistance to
transporter genes of the ATP-binding cassette
antifungal agents. Previous studies with cultures
(ABC) and the major facilitator superfamily
of A. fumigatus maintained under static aerial
(MFS) classes have been shown to be clinically
conditions have demonstrated the presence of
important in different pathogenic fungi (Cannon
an ECM on the colony surface of colonial
et al. 2009; Morschhauser 2010). Sequence anal-
mycelia that colonies encased with ECM are
ysis suggests that A. fumigatus has 278 different
extremely hydrophobic and display more resis-
MFS and 49 ABC transporters (Nierman
tance to antifungal polyenes AmB and nystatin
et al. 2005). A. fumigatus MDR (AfuMDR)
(Beauvais et al. 2007). It is thought that ECM
pumps have been described in several studies
may act as a physical barrier that decreases the
and have been shown to be associated with
access of antifungals to cells embedded in the
increased resistance to itraconazole (da Silva
biofilm community. The penetration of the drugs
Ferreira et al. 2004; Nascimento et al. 2003).
is a function of the amount and nature of ECM, as
Recently, it has been shown that non-cyp51a
well as the physicochemical properties of the
mediated itraconazole resistance may be
antifungal agents. Thus anything that disrupts
associated with efflux pump activity through
the biofilm may increase the sensitivity to anti-
cdr1B (Fraczek et al. 2013).
fungal agents. cspA encodes a repeat-rich
In an A fumigatus biofilm model azole resis-
glycophosphatidylinositol-anchored cell wall
tance was shown to increase 16–128-fold in the
protein in A. fumigatus. A deletion of cspA
12 h phase and >512-fold at the 24 h phase
resulted in a rougher conidial surface, reduced
compared to 8-h germlings (Rajendran
biofilm formation and decreased resistance to
et al. 2013). An Ala-Nap uptake assay
antifungal agents (Fan et al. 2015). Another
demonstrated a significant increase in efflux
example is the oligosaccharide OligoG which is
pump activity in the 12-h and 24-h phases
an alginate derived from seaweed, SEM and
(P < 0.0001). In addition efflux pump activity
AFM both showed that OligoG (2 %) markedly
of the 8-h germling cells was significantly
disrupted fungal biofilm formation, both alone,
induced by VRZ. Inhibition of efflux pump activ-
and in combination with fluconazole. Calculation
ity with the competitive substrate MC-207,110
of Fractional Inhibitory Concentration Index
reduced the VRZ MIC values for the
showed that for A. fumigatus at the higher
A. fumigatus germling cells by 2–8-fold . Quan-
concentrations of OligoG used synergy occurred
titative expression analysis of AfuMDR4 mRNA
between the compound and AmB and VRZ
transcripts also showed a phase-dependent
(Tondervik et al. 2014).
increase as the mycelial complexity increased,
Aspergillus Biofilms in Human Disease 7

Aspergillus ECM was initially thought to be VRZ-exposed cells by eight-fold, which visually
composed of galactomannan, alpha-1,3 glucans, could be explained by destabilisation of the bio-
melanin and other proteins including film when examined microscopically. Pharmaco-
hydrophobins (Beauvais et al. 2007). However logical inhibition of Hsp90 by GDA also
our work has demonstrated the presence of extra- significantly improved biofilm susceptibility to
cellular DNA (eDNA) in A. fumigatus biofilm AmB by 4–8-fold. Suggesting that A. fumigatus
ECM, which is released upon fungal autolysis pre-exposure to VRZ concomitantly induces
(Rajendran et al. 2013). We suggested that the eDNA release and activates the stress response,
role of eDNA is maintenance and stability of which collectively confers AmB resistance
biofilms and biofilm resistance to antifungal in vitro (Rajendran et al. 2013).
drugs (Krappmann and Ramage 2013). When
A. fumigatus biofilms are treated with DNAse
there is improved antifungal susceptibility to 9 Other Approaches
AmB or caspofungin. These findings together
demonstrated the important role of eDNA in Undoubtedly the most effective and logical way
Aspergillus ECM biofilm. The role of eDNA in of dealing with clinically important fungal
biofilm formation and stability has been con- biofilms is to either inhibit their development,
firmed by another group who added exogenous use mechanical force to disrupt them or simply
eDNA in an in vitro biofilm model (Shopova remove and replace an implicated medical
et al. 2013). They also showed that eDNA device. Wound fungal biofilms are managed
improved surface adhesion of fungal spores and with surgical debridement (Warkentien
also co-localised with ECM biofilm et al. 2012). In severe wounds, such as those
polysaccharides, becoming part of the ECM occurring from combat trauma, liposomal AmB,
surrounding the biofilm cells. VRZ and posaconazole have been used, often as
Other components of the ECM may also be combinational therapy, although the clinical
targeted to improve therapeutic response to outcomes were variable. Nevertheless, it has
antifungals. When biofilms are treated with algi- been reported that in the management of a case
nate lyase (AlgL) both fractional inhibitory con- of fungal osteomyelitis combined use of VRZ
centration index values and time kill analyses and terbinafine along with surgical debridement
show synergy between AlgL and amphotericin. was able to successfully control a Scedosporium
In addition a combination of AlgL and inflatum infection and salvage the limb (Cetrulo
amphotericin showed a reduction in hyphal et al. 2012).
thicknesses (Bugli et al. 2013). These studies suggest that wound fungal
biofilms may have a different structural compo-
sition, as they respond to azoles more effectively
8 Previous Therapy than other fungal biofilms. Many of these
infections are polymicrobial, and undergo
As described earlier triazoles are the mainstay of repeated debridement with topical antiseptics.
treatment for aspergillosis. Failure to respond Moreover, wound dressings containing antimi-
clinically or refractory infections may necessitate crobial molecules are used, so it is not surprising
a switch to other antifungal agents, including that fungal wound biofilms respond to azole ther-
AmB. One study explored the possibility that in apy in this context.
A. fumigatus biofilms sequential antifungal ther-
apy may impact adaptive resistance mechanisms
(Rajendran et al. 2015). A. fumigatus sensitivity 10 Concluding Remarks
to AmB was decreased when it was tested in
combination with VRZ. The mechanism of this From review of the available literature it is evi-
increase may be twofold. Depletion of eDNA by dent that Aspergillus biofilms may play a signifi-
DNase treatment enhanced AmB activity against cant role in clinical medicine. These fungi have
8 C. Williams et al.

been shown to form biofilms in both hard and Aspergillus species and other opportunistic molds.
soft tissue, and upon implanted medical devices. Clin Infect Dis 35:E86–E88
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et al. 2015). In general clinical awareness of the tative and quantitative microbiological analysis of
sputa of 102 patients with cystic fibrosis. Infection
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supported by diagnostic testing, but at present extracellular matrix glues together the aerial-grown
there is no definitive test for an Aspergillus bio- hyphae of Aspergillus fumigatus. Cell Microbiol
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Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2016) 3: 13–20
DOI 10.1007/5584_2016_5
# Springer International Publishing Switzerland 2016
Published online: 7 June 2016

Candida albicans in Multispecies Oral


Communities; A Keystone Commensal?

Marleen M. Janus, Hubertine M.E. Willems,


and Bastiaan P. Krom

Abstract
The complexity of the oral cavity, in which many hundreds of microbial
species interact represents a challenge for modern microbiologists. What
are all these species doing there? And why do we accept so many
opportunistic pathogens to be part of our health (commensal) microflora?
While the role of bacteria are often being studied, the role of fungi in the
interactions within the oral cavity are understudied. This is partly because
fungi in the oral cavity are generally considered as pathogens and related
to diseases. In this chapter we will explore mechanisms of interaction
between bacteria and fungi in the oral cavity that are involved in mainte-
nance of oral health. We will argue that fungi in general and
C. albicans specifically, should be regarded a keystone commensal in
the oral cavity.

cavity is colonized by billions of microorganisms


1 Introduction ranging from viruses, bacteria to eukaryotes such
as fungi and protozoa (Filoche et al. 2010). These
1.1 The Oral Cavity microorganisms mostly reside in 3-dimensional
communities termed biofilms with large species
The oral cavity is the beginning of the gastroin- diversity. The oral cavity is a very diverse
testinal tract and digestion of our food starts here. environment with many distinct ecological
Like other parts of this digestive system, the oral niches (Simon-Soro et al. 2013) that probably

M.M. Janus and B.P. Krom (*)


Top Institute Food and Nutrition, Wageningen, The H.M.E. Willems
Netherlands Department of Preventive Dentistry, Academic Centre for
Dentistry Amsterdam (ACTA), University of Amsterdam
Department of Preventive Dentistry, Academic Centre for
and VU University Amsterdam, Gustav Mahlerlaan 3004,
Dentistry Amsterdam (ACTA), University of Amsterdam
1081 LA Amsterdam, The Netherlands
and VU University Amsterdam, Gustav Mahlerlaan 3004,
1081 LA Amsterdam, The Netherlands Department of Clinical Pharmacy, University of
e-mail: b.krom@acta.nl Tennessee Health Science Center, Memphis, TN, USA

13
14 M.M. Janus et al.

differentiate based on the nature of the surface attention (Krom et al. 2014). Candida albicans is
(e.g. hard tooth surfaces or softer mucosal probably the most commonly encounter oral fun-
surfaces), but also on varying nutrient availabil- gus. It is linked to common diseases such as oral
ity and dynamic occurrence of oxygen limitation. thrush in infants and HIV-positive patients. In
addition, it is commonly found associated with
biomaterials such as dentures where it causes
1.2 Oral Ecology denture stomatitis (O’Donnell et al. 2015).
More recently it has been suggested that
Upon birth humans are colonized by bacteria, C. albicans is related to development of tooth
starting in the oral cavity. While passing through caries (Metwalli et al. 2013) and might be linked
the birth canal the infant gets inoculated with to endodontitis (Waltimo et al. 2003). In all cases
resident bacteria. However, recently bacterial C. albicans is rarely found alone; there is strong
presence was shown in the placenta and it is evidence for complicated physical interactions
possible that the fetus is trained to recognize with a range of oral bacteria. For instance,
commensal flora during its time in the womb S. mutans and C. albicans interact physically
(Zaura et al. 2015). Surprisingly, these placental and are found in high numbers in caries, espe-
bacteria were closely related to oral bacteria. cially in early childhood caries (Metwalli
After initial colonization of the oral cavity, the et al. 2013).
downstream parts of the gastrointestinal tracts
are slowly colonized, initially with these oral
bacteria. After some time the gut ecology 1.4 Oral Fungi in Health
differentiates into a specific composition and
remains relatively stable over time. The oral eco- Compared to the attention given to the role of
system however is relatively dynamic; it changes bacteria in the healthy oral cavity and compared
over time with its ever-changing host. Hour-to- to the involvement of fungi in pathology, there is
hour variation, monthly cycles as well as life- little to no information on the role of fungi
time changes such as tooth eruption and tooth in healthy oral ecologies. Ghannoum and
loss change the playing field for adhesion. Also coworkers for the first time described the
hormonal changes during puberty and pregnancy mycobiome (the total of all fungi) of healthy
are reflected in the composition of the saliva and volunteers (Ghannoum et al. 2010). Subsequently
strongly influences oral composition (Kumar several other studies have shown that health oral
2013). In general it is believed that a healthy ecologies contain many fungal species (Dupuy
oral ecology is highly diverse in species compo- et al. 2014; Monteiro-da-Silva et al. 2013;
sition. This diversity is lost when pathology Monteiro-da-Silva et al. 2014). It is becoming
arises and/or vice versa, pathology arises when clear that over 100 fungal species can be found
this diversity is lost. The role of oral bacteria in as part of the oral flora. Due to the highly mobile
oral pathologies is well studied. This is not nature of fungal spores some of these species
surprising as they are the cause of the most com- might be environmental contaminants and be
mon infectious diseases of today: caries and gin- transiently present, but many others are likely
givitis. In contrast, the role of bacteria in to be part of the resident oral flora. It should be
maintaining health has only recently attracted taken into account that while fungal counts might
attention. remain extremely low compared to bacterial
counts (less than 0.1 %), their size compensates
for this. Lets considered bacteria to be spheres
1.3 Oral Fungi Focussed on Disease with a radius of 0.5 μm (very realistic) and fungi
to have a radius of 2.5 μm (realistic for yeasts,
In contrast to the role of bacteria in oral diseases, but certainly not for filamentous forms). The
the role of fungi has received considerably less calculated volumes according to the formula
Candida albicans in Multispecies Oral Communities; A Keystone Commensal? 15

V ¼ 4/3*π*r3 are 0.5 μm3 and 65.4 μm3, respec- interactions can occur on different levels; mainly
tively. This means that if the total number of physical, metabolic and chemical interactions
fungi is only 0.1 % of the total microbial load, (Fig. 2.1).
they represent at least 10 % of the biovolume
(ergo biomass). Therefor they are to be consid-
ered a significant part of the healthy oral ecol- 2.1 Physical Interactions
ogy and should not be disregarded!
In this chapter we will explore mechanisms of Within the biofilm microbes are by definition
interaction between bacteria and fungi in the oral closely packed. However, on a single cell level,
cavity that are involved in maintenance of oral there are positive and negative interactions
health. We will argue that fungi in general and resulting in attraction and repulsion of individual
C. albicans specifically, should be regarded a cells. As a consequence of non-specific (mostly
keystone commensal in the oral cavity. hydrophobic and electrostatic) and specific
(protein-protein) interactions certain species are
commonly found together. Both mechanisms
2 Type of Bacterium-Fungus play a role in the adhesion of bacteria to fungi,
Interactions Related to Health as has been illustrated recently for the
interactions between the Gram-negative bacte-
It is generally accepted that a healthy ecosystem rium Pseudomonas aeruginosa and C. albicans.
is a balanced ecosystem. Such balance is P. aeruginosa strongly adheres to and kills
maintained by the interaction of forces within hyphae of C. albicans, but not yeasts cells. This
the ecosystem. These forces are derived from difference in adhesion to and subsequent killing
interactions between individuals within the eco- of the hyhal and yeast morphology is utilized by
system and balance is the overall result of all of C. albicans as a defense mechanism (for more
these interactions (Krom and Oskam 2014). The details (Jarosz et al. 2011)). Using physic-

Fig. 2.1 Schematic


overview of the three types
of interactions between
C. albicans and bacteria
described in this chapter.
This overview is far from
complete. See text for more
details
16 M.M. Janus et al.

chemical and force microscopic analyses, it was biofilms are the source of recolonization. In the
shown that the strong hydrophobic nature of the oral cavity, environmental challenges are con-
hyphal cell wall attracts cells of P. aeruginosa stantly present; at least twice a day high levels
(Ovchinnikova et al. 2012a, b). By virtue of their of antimicrobial compounds are washed through
hydrophobic nature, surface proteins of the the oral cavity. The mixed-species C. albicans –
hyphal cell wall were shown to be mostly respon- bacteria biofilms could therefor be instrumental
sible for the non-specific interactions mediating to healthy recolonization after routine oral
this adhesion. When the bacterium approaches hygiene. Healthy recolonization is of great
the fungus close enough, a specific chitin- importance to maintenance of overall health.
binding protein interacts with chitin in the fungal There is a growing body of evidence suggesting
cell wall (Ovchinnikova et al. 2012a, b). The role that the oral ecology is involved in regulation of
of non-specific interactions and a specific bacte- important physiological functions, such as blood
rial binding protein, but absence of a specific pressure (see Box 1). Consequently, this scaffold
fungal binding protein might illustrate the antag- function of C. albicans in the oral cavity could
onistic nature of this interactions; beneficial for assist in stability of the oral ecology and thus in
P. aeruginosa, but disadvantageous for maintenance of overall health.
C. albicans (Hogan and Kolter 2002; Hogan
et al. 2004). In contrast, the interaction between
Box 1: How oral bacteria impact healthy
S. aureus and C. albicans is probably a benign, if
physiology
not mutually advantageous interaction for both
Our blood pressure is regulated by a small
species. Using a similar approach as described
diffusible molecule: NO (nitric oxide).
for P. aeruginosa, interactions between S. aureus
Dietary components with high nitrate con-
and C. albicans were investigated. It was shown
tent, such as spinach and other green
that a specific hyphal wall protein (Als3p) was
vegetables, are able to lower the blood
involved in strong interaction forces (Peters
pressure (Larsen et al. 2006). Nitrate
et al. 2012). A S. aureus counterpart has not yet
(NO3) is converted to nitrite (NO2) and
been identified, but considering the extend of the
subsequently to nitric oxide (NO). We
interaction forces determined using force micros-
humans have enzymes capable of
copy, this will only be a matter of time. Similar
converting NO2 to NO, but we lack
interactions have been observed between Strep-
enzymes that convert NO3 to NO2. Upon
tococcus mutans and C. albicans as well as for
digestion of dietary NO3, our body feeds
C. albicans and a range of other oral bacteria
back the NO3 to the oral cavity through the
(Nobbs et al. 2009; Silverman et al. 2010; Wright
salivary glands. In the oral cavity bacteria
et al. 2013; Bachtiar et al. 2014). The potential
convert the NO3 to NO2 that is taken up by
relevance of such interactions in the oral cavity
the host. Oral disinfection using chlorhexi-
follows from two independent observations.
dine prior to the consumption of dietary
Firstly, upon adhesion to the hyphae of
NO3 prevented the conversion to NO2 and
C. albicans, S. aureus become more tolerant
subsequent lowering of the blood pressure
towards antibiotics (Harriott and Noverr 2010).
(Govoni et al. 2008). Thus, oral bacteria are
Secondly, using a murine gut-model, it was
truly important for a healthy physiology!
shown that when C. albicans was present, bacte-
rial recolonization following antibiotic treatment
was enhanced (Mason et al. 2012b; Mason 2.2 Chemical Interactions
et al. 2012a; Erb Downward et al. 2013). When
these two observations are combined, it is very Chemical interaction within a species is com-
well possible that adhesion to and biofilm forma- monly referred to as intraspecies signaling or
tion on C. albicans protects many bacteria quorum sensing. A small diffusible molecule is
against antibiotic challenges and such surviving synthesized and accumulates in the external
Candida albicans in Multispecies Oral Communities; A Keystone Commensal? 17

medium. Upon reaching a threshold concentra- mechanism by which C. albicans creates an


tion, gene expression is induced and a concerted anaerobic micro-niche is unknown, but could be
response of the population is given. Due to the related to high level of O2 consumption typical
external nature of the quorum sensing molecules for yeasts (Wesolowski et al. 2008). It is known
they are commonly detected by other species that there is enormous niche-diversity in the oral
than the ones producing them (Jarosz et al. cavity (Jenkinson 2011) and conceptually the
2011). Several bacterial QS molecules have observation that C. albicans creates an anaerobic
been shown to affect C. albicans behavior micro-niche explains the niche-diversity that is
(Fig. 2.1), amongst others Homoserine lactone so typical for the oral cavity; aerobic and anaero-
(HSL) produced by P. aeruginosa (Hogan et al. bic niches exist side by side, depending on the
2004), Competence Stimulating Peptide (CSP) microbial species composition.
produced by S. mutans (Jarosz et al. 2009) A metabolic interaction at the substrate level
and autoinducer-2 (AI-2) of Aggregatibacter has been shown for the interaction between
actinomycetemcomitans (Bachtiar et al. 2014). S. mutans and C. albicans. Caries is a long-term
This interaction is bi-directional as C. albicans process in which lactic acid, produced by bacte-
secretes the QS molecule farnesol (Hornby ria, result in demineralization of tooth surfaces.
et al. 2001) which, inhibits Pseudomonas quino- Under healthy conditions, lactic acid is removed
lone signal (PQS) production (Cugini et al. 2007; by saliva flow and microbial metabolism. Health-
Cugini et al. 2010). PQS is needed for the expres- related bacteria such as Veillonella spp. grow on
sion of several virulence factors (Bjarnsholt the lactic acid produced mainly by S. mutans.
et al. 2010) and C. albicans thus decreases the Several studies have described C. albicans as an
virulence of P. aeruginosa using chemical organism capable of synergizing the onset and
interactions. progression of caries induced by S. mutans
(Metwalli et al. 2013; Falsetta et al. 2014; Jarosz
et al. 2009). We have recently shown that the
2.3 Metabolic Interactions presence of C. albicans in a dual-species biofilm
with S. mutans does not synergize the cariogenic
In addition to physical and chemical interactions, capacity in terms of acidity and calcium release,
metabolic interactions probably play a role in the the two main surrogates for caries (Willems
oral cavity. For example, recently it was shown et al., Pathogens and Disease, accepted for publi-
that C. albicans allows growth and biofilm for- cation). In contrast, the presence of C. albicans
mation of anaerobic bacteria under aerobic appears to decrease the cariogenic potential of
conditions (Fox et al. 2014). In the oral cavity the biofilm. Mixed biofilms become less acidic
the presence of anaerobic bacteria is well- over time, and after 72 h of biofilm growth the
established, also in health. For example, the strict bulk pH remains above the critical pH of 5.5
anaerobic Veillonella spp. are related to (Matsui and Cvitkovitch 2010). Since lactic
decreased caries risk because they consume lac- acid production potential was increased in our
tate (the main acid involved in caries develop- mixed biofilms, it is possible that C. albicans
ment). How such strict anaerobes can survive influences the pH in an independent fashion of
in an aerobic niche as the oral cavity is still S. mutans. There are several possible
not entirely known. Recently it was shown that explanations for this observation. A study by
C. albicans allows growth and biofilm formation Ene et al. (2012) showed that C. albicans is
of several strict anaerobic (mainly gut) bacteria able to grow using lactic acid as a carbon source
under aerobic condition (Fox et al. 2014). We (Ene et al. 2012). Furthermore, lactic acid is the
have shown in vitro that in the presence of most preferred source of carbon in hypoxic
C. albicans many strict anaerobic oral bacteria conditions for the fungus and hypoxic conditions
can also grow under aerobic culture conditions are being created by C. albicans (Fox
(Janus et al., submitted for publication). The et al. 2014). Logically, consumption of lactic
18 M.M. Janus et al.

acid by C. albicans would cause the environment et al. 2012)). Briefly, periodontitis is a very com-
to become less acidic. This effect is enlarged as mon oral disease related to chronic inflammation
S. mutans increases in numbers, since sucrose is of the tooth-supporting tissues. While the micro-
then consumed even faster. At an early time point bial biofilms is certainly involved in the onset of
when sucrose is not limited, C. albicans favors the disease, it is the inflammatory response by the
the consumption of sucrose over lactic acid, pro- host that causes irreversible damage to the tooth-
ducing ethanol. When sucrose becomes limited, supporting tissues. One of the bacteria involved
C. albicans is obligated to consume the lactic in periodontitis is P. gingivalis. Important viru-
acid. Alternatively, C. albicans can regulate its lence factors of P. gingivalis are secreted
external pH in response to low pH (Vylkova proteases, the gingipains. These proteases acti-
et al. 2011). This has mainly been studied in vate the complement factor C5, generating C5a
relation to phagocytosis (Vylkova and Lorenz that binds to the C5a-receptor leading to activa-
2014). Production of NH4+ from amino acids tion of inflammation and impairs leukocyte kill-
result in increase of the bulk pH. This phenome- ing. Together this allows other bacteria to thrive.
non would resemble the therapeutic effect So by the mere production of a protease a
described for arginine-containing toothpastes low-level presence of P. gingivalis can orches-
and arginine has been shown to increases trate inflammation.
C. albicans presence in in vitro oral biofilms
(Koopman et al. 2015).
4 Conclusion
3 Keystone Organisms’ Theory The role of fungi in the complex oral ecosystem
that is dominated by 400+ bacterial species has
Originating from architecture where the keystone remained enigmatic. Recent studies on the role of
represents the top stone of an arch, the keystone C. albicans in the healthy oral cavity has started
paradigm has made its entry into ecology near to shed a light on several key functions of fungi
the end of the last century. When a certain spe- in maintaining a healthy balance. However,
cies has disproportionately large effects on their unmistakably, C. albicans are a minority when
communities, given their abundance, it is thought cell numbers are considered. The overview
to form the ‘keystone’ of the community’s struc- provided above however indicates that even
ture (Hajishengallis et al. 2012). Traditional when present in low numbers a considerable
infections are based on accumulation of a spe- effect on the total ecology is exerted. For
cific pathogen to levels unacceptable to the host instance by rapid consumption of molecular oxy-
(dominant pathogen). Dysbiosis with the host is a gen, rapid increase of local pH and by providing
result of this accumulation in microbial load. a physical scaffold for oral bacteria to adhere
Keystone pathogens modulate the host and/or to. We therefor present the hypothesis that
the ecology in such a way that is unacceptable C. albicans functions as a keystone commensal
to the host, without increasing its own presence in the healthy oral cavity.
significantly.

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Adv Exp Med Biol - Advances in Microbiology, Infectious Diseases and Public Health (2016) 3: 21–35
DOI 10.1007/5584_2016_6
# Springer International Publishing Switzerland 2016
Published online: 7 June 2016

The Extracellular Matrix of Fungal Biofilms

Kaitlin F. Mitchell, Robert Zarnowski, and David R. Andes

Abstract
A key feature of biofilms is their production of an extracellular matrix.
This material covers the biofilm cells, providing a protective barrier to the
surrounding environment. During an infection setting, this can include
such offenses as host cells and products of the immune system as well as
drugs used for treatment. Studies over the past two decades have revealed
the matrix from different biofilm species to be as diverse as the microbes
themselves. This chapter will review the composition and roles of matrix
from fungal biofilms, with primary focus on Candida species, Saccharo-
myces cerevisiae, Aspergillus fumigatus, and Cryptococcus neoformans.
Additional coverage will be provided on the antifungal resistance prof-
fered by the Candida albicans matrix, which has been studied in the most
depth. A brief section on the matrix produced by bacterial biofilms will be
provided for comparison. Current tools for studying the matrix will also be
discussed, as well as suggestions for areas of future study in this field.

Keywords
Extracellular matrix • Biofilm • Antifungal resistance • Candida albicans •
Device-associated infections

1 Introduction a structural scaffold for both adhesion to surfaces


and cohesion between cells (Flemming and
A defining feature of the biofilm lifestyle is pro- Wingender 2010; O’Toole 2003). Additionally,
duction of an extracellular matrix. The matrix the matrix of certain organisms can contribute to
surrounds the cells within the biofilm, providing the retention of water and nutrients, and in some
cases these nutrients are thought to derive from
matrix materials hydrolyzed by microbial-
K.F. Mitchell, R. Zarnowski, and D.R. Andes (*) produced enzymes (Flemming and Wingender
Department of Medicine, University of Wisconsin-
2010). Perhaps the most medically-relevant func-
Madison, Madison, WI, USA
e-mail: kfmitchell@wisc.edu; rzarnowski@wisc.edu; tion of the extracellular matrix is its ability to
dra@medicine.wisc.edu provide a physical barrier between biofilm cells

21
22 K.F. Mitchell et al.

and the surrounding environment. In a human containing polysaccharides, extracellular DNA


host, this includes cells and products of the (eDNA), lipids (namely rhamnolipids), and
immune system and often drugs used for treat- proteins (Mann and Wozniak 2012).
ment (Costerton et al. 1999; Donlan 2001). Polysaccharides include Psl, Pel, levan, and algi-
The composition of the matrix has been com- nate, whose quantity depends on the strain in
prehensively studied in only a handful of biofilm question, the stage of biofilm development, and
species. Most of these studies have occurred the site of biofilm formation (Ma et al. 2009). For
in bacteria, though the fungi Saccharomyces example, strains designated mucoid or
cerevisiae, Aspergillus fumigatus, Cryptococcus non-mucoid differ in their overexpression of
neoformans and Candida albicans serve as alginate, which occurs during infections of the
exceptions. The diversity of biochemical entities lungs of cystic fibrosis patients (Franklin
discovered, and the observation that matrix et al. 2011; Mann and Wozniak 2012). The
components can be similar to components of other polysaccharides are typically produced by
the fungal cell wall, suggests that the composi- environmental strains or those isolated from
tion of biofilm matrices can be as diverse as the other types of infections. Pel has been exten-
microbes that produce them (Branda et al. 2005; sively studied, and found to lend a protective
Zarnowski et al. 2014). This chapter will review role against aminoglycoside antibiotics (Colvin
the composition and roles of matrix from fungal et al. 2011). DNA in the Pseudomonas matrix
biofilms, with a brief coverage on bacterial also contributes to structural stability, and has
matrices for comparison. Current tools for study- been found to induce antibiotic resistance
ing the matrix will also be discussed, as well as (Yang et al. 2011; Mulcahy et al. 2008).
suggestions for areas of future study in this field. Other molecules have been identified in the
matrices of multiple bacterial biofilms. Namely,
cellulose is a critical component for Escherichia
2 Matrix of Bacterial Biofilms coli, Klebsiella pneumonia, Enterobacter spp.,
Citrobacter spp., and Salmonella typhimurium
Most studies of biofilm extracellular matrix (Hobley et al. 2015; Branda et al. 2005; Hung
components to date have utilized bacterial spe- et al. 2013). PNAG, identified in B. subtilis, is
cies. One well-characterized model system also found in Staphylococcus aureus and Staphy-
involves the gram-positive, spore-forming bacte- lococcus epidermidis, as well as the related mol-
rium Bacillus subtilis, which can form pellicles ecule polysaccharide intercellular adhesin (PIA)
or submerged biofilms depending on the strain (Branda et al. 2005).
and environmental conditions (Vlamakis In addition to the composition and production
et al. 2013). Several polymeric components of of individual matrix components, assembly of
the B. subtilis matrix have been described, such the entire matrix over the course of bacterial
as poly-DL-glutamic acid (PGA) and the proteins biofilm development has been explored in two
TapA, TasA, and BslA. This matrix also contains species. The first of these is Vibrio cholerae,
exopolysaccharide (EPS), which is produced by which produces a matrix of Vibrio polysaccha-
the eps operon (Marvasi et al. 2010). Notably, the ride (VPS) and the proteins RbmA, RbmC, and
EPS component was recently discovered to be at Bap1 (Teschler et al. 2015; Fong et al. 2010;
least partially composed of poly-N-acetyl glu- Reichhardt et al. 2015b). A 2012 study by Berk
cosamine (PNAG), a widely conserved bacterial et al. revealed distinct stages of cellular cluster-
polysaccharide (Roux et al. 2015), and had pre- ing during biofilm formation, with RbmA
viously been shown to act as a positive regulator providing initial adhesion between cells and
of its own synthesis (Elsholz et al. 2014). Bap1 aiding in surface adhesion. Cell clusters
A second model organism for the study of were surrounded by mixtures of VPS, RbmC,
biofilm formation is Pseudomonas aeruginosa, and Bap1 in the later stages of biofilm develop-
which produces an extracellular matrix ment (Berk et al. 2012). Similarly, “spatially
The Extracellular Matrix of Fungal Biofilms 23

segregated” subpopulations of cells surrounded found in extracellular matrices. To quantify the


by extracellular matrix were observed within gross amount of protein, colorimetric assays such
E. coli pellicles in a 2013 publication by as bicinchoninic acid (BCA), Bradford, Folin-
Hung et al. In addition, this study confirmed Lowry, Kjeldahl or ultraviolet absorption can be
that amyloid fibers formed by curli as a employed. For identification of specific proteins,
major matrix constituent, with cellulose, chromatographic and electrophoretic separation
flagella, and type 1 pili also involved (Hung strategies have been extensively used followed
et al. 2013). Together, these recent findings sup- by various mass spectrometry (MS) analytical
port the notion that biofilm matrix is not simply a techniques (Zarnowski et al. 2014; Reichhardt
disorganized conglomerate, but rather specific et al. 2015a). Recent advances in bottom-up pro-
microenvironments of components that emerge teomics technologies have been especially
in time and space. important to the study of extracellular matrix,
as they allow for in-depth relative and absolute
quantification of proteins in intact or minimally-
3 Fungal Matrix processed biological samples (Zhang et al. 2013).
For example, our group recently utilized shotgun
Multiple types of fungi form biofilms, found both proteomics to achieve global protein identifica-
in the environment and in infection settings. The tion in the C. albicans biofilm matrix (Zarnowski
first investigations of the extracellular matrix of et al. 2014).
fungal biofilm species were performed by the Overall measurement of monosaccharides can
Douglas group, with Candida albicans, nearly be accomplished using the phenol-sulfuric assay
two decades ago (Hawser and Douglas 1994; (DuBois et al. 1951). A specific assay for β-1,3
Hawser et al. 1998). Since that point, several glucan quantification is the limulus assay, which
groups have investigated basic aspects of matrix has been used both in vitro and as a diagnostic in
production and its individual components. How- clinical settings (Nett et al. 2007b; Nett
ever, not until the past few years has a larger et al. 2007a). For the most precise quantification
picture of the matrix emerged, using multiple of carbohydrates gas chromatography is the gold
approaches to examine how its various entities standard, and is typically coupled with MS anal-
collectively function to provide structural integ- ysis for qualitative purposes. For structural anal-
rity and protection to the cells of biofilms. ysis, complementary approaches utilizing GC,
MS, and multiple nuclear magnetic resonance
(NMR) procedures provide the granularity
3.1 Tools for Studying the Matrix needed for accurate structural assignments. Sim-
ilar to techniques previously used to analyze the
It has been proposed that successful quantifica- C. albicans cell wall, a combination of several
tion of the entire extracellular matrix is nearly solution-state 1H and 13C NMR techniques have
impossible, as matrix isolation methods could been used to examine the matrix (Shibata
potentially disrupt the cell wall (Flemming and et al. 2007; Zarnowski et al. 2014). Recently,
Wingender 2010). However, recent protocols solid-state 13C, 15N, 31P NMR spectroscopy has
have demonstrated no change in the chemical also proven a powerful ally in generating more
composition of the cell wall following matrix complete descriptions of macromolecular
extraction. These methods have used either assemblies (Reichhardt et al. 2015a; Cegelski
mild detergents (or none at all), combined with 2015). For more detailed information on the
gentle sonication to separate the cells from the molecular size and shape of individual matrix
matrix material (Zarnowski et al. 2014; polysaccharides, small-angle X-ray scattering
Reichhardt et al. 2015a; Lattif et al. 2008). (SAXS) has also been employed.
Biochemical approaches have been used to Lipids in the extracellular matrix have also
analyze the different classes of macromolecules been quantified using gas chromatography. For
24 K.F. Mitchell et al.

crude separation of different lipids, TLC can be et al. 2008; Guo et al. 2000; Reynolds and Fink
used, though the most detailed data can be 2001). Of these, FLO11 is required for
achieved using MS-based shotgun lipidomics. S. cerevisiae biofilm formation (Reynolds and
The system recently employed by our group Fink 2001; Guo et al. 2000; Ishigami et al. 2004).
involved liquid chromatography (LC)/mass S. cerevisiae can produce extracellular matrix
selective detector (MSD) time of flight (TOF) in both the flocculating and biofilm forms, as
with electrospray ionization (Zarnowski well as in structured colonies formed by environ-
et al. 2014). This technique has also been mental isolates. This matrix material has been
employed for analysis of small molecular weight visualized using electron microscopy (Zara
lipophilic molecules, such as ergosterol and other et al. 2009; Kuthan et al. 2003; Vachova
sterols. et al. 2011; Beauvais et al. 2009). The 2009
The final class of macromolecule, nucleic study by Beauvais et al. examined the composi-
acids, can be measured in crude matrix material tion and role of the matrix in FLO1-expressing
spectrophotometrically or with use of specific cells, which exhibit strong flocculation and
dyes (Zarnowski et al. 2014; Martins higher resistance to stress and drugs (Beauvais
et al. 2010). In our group’s recent study, the et al. 2009). Flo1p aids in flocculation by
potential presence of coding regions was exam- interacting with sugars on the cell walls of neigh-
ined by creating a clone micro-library of random boring yeast, as its exposed N-terminus possesses
regions of matrix DNA, followed by sequence lectin-like properties (de Groot and Klis 2008;
homology analysis to the Candida Genome Dranginis et al. 2007). Matrix from the ‘floc’ was
Database. extracted using EDTA and shown to be loosely
For measurement of known matrix entities, attached to the cell surface. The material
monoclonal antibodies have been produced for contained mainly glucose and mannose, with a
both imaging purposes and quantification in negligible amount of protein. GC-MS analysis
microtiter based assays such as ELISA revealed the mannose portion to be a chain of
(Zarnowski et al. 2014; Martinez and Casadevall (1–6) mannan with (1–2) and (1–3) linked
2015). For further characterization of the matrix branches. Beauvais et al. also showed the matrix
material, both SEM and TEM have been used, as from flocculated S. cerevisiae was able to
well as atomic force microscopy (AFM) (Yang exclude high molecular weight molecules such
et al. 2011; Lal et al. 2010). as antibodies or concanavalin A. However,
smaller entities, namely amphotericin B and eth-
anol, were not blocked in this case.
3.2 Saccharomyces cerevisiae Additional studies have described
components of the S. cerevisiae matrix produced
The yeast Saccharomyces cerevisiae has long under different growth conditions. A study with
been used as a model organism for many basic environmental isolates formed ‘fluffy’ colonies,
aspects of eukaryotic biology, and as a means to as opposed to the smooth surface produced by
investigate fungal biology in a non-pathogenic laboratory strains. Matrix from the environmen-
system. In the last fifteen years, it has also been tal strains contained an unidentified protein unre-
explored as a model for the biofilm lifestyle. lated to flocculins. The matrix material also
Certain strains of S. cerevisiae exhibit floccula- reacted with concanavalin A, indicating the pres-
tion, or clumping of cells, and others can form ence of exposed terminal mannose or glucose
true surface-adherent biofilms (Verstrepen and residues (Kuthan et al. 2003). More recent
Klis 2006; Bojsen et al. 2012). Both flocculation investigations involved cells grown in a three-
and biofilm formation rely on the FLO family of dimensional mat on solid medium, and used mul-
cell surface adhesins, or flocculins, which are tiple analytical techniques to identify protein and
related to the ALS family and the Hwp1p carbohydrate matrix components in both
adhesins in Candida albicans (Nobile S. cerevisiae and C. albicans (Faria-Oliveira
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Nunc igitur sedeat sapiens et computet actus,
Quam prius adueniat iudicis illa dies.

Postquam de gaudiis et penis que bonis et


malis debentur tractauit, consulit vlterius quod
unusquisque ad bonos mores se conuertat, et
de hiis que negligenter omisit, absque
desperacione contritus indulgenciam a deo
confidenter imploret.

Cumque repentinum casum breuis hora


Capm. xx.
minatur,632
Dum tenuem flatum suscitat aura leuis,
Care, memento tui, quis sis, cur, vnde vel ad quid,
1110 Vel cuius factus condicionis eras;
Quod caro sit fragilis, fallax facilisque moueri,
Prona sit ad peius, pessima prompta sequi.
Spiritus hunc mundum spernat speretque futura,
Semper in auctoris fixus amore sui:
Quod caro spiritui subdatur eumque sequatur,
Spiritus auctori seruiat ipse suo;
Quod motus carnis moderetur, commemoranda
Est mors et pena mortis habenda malis.
Non poterit melius hominis caro viua domari,
1120 Quam quod mente gerat mortua qualis erit.
Fletibus assiduis, est dum data gracia flendi,
Penituisse iuuat estque salubre satis:
Nec deus ethereus hec crimina vendicat vlli,
Que confessa dolens non residiua facit.
Qui reus est igitur homo, penam temporis huius
Sustineat, donec diluat omne malum;
Vt sic purgatus, cum iudex venerit, illam
Effugiat penam, que sine fine manet:
Nam qui iussa dei non seruat et vltima vite
1130 Spectat, ad infernum cogitur ille trahi.
Scripture fallunt, aut certe noscere debes
Quod redit ad veniam vix animalis homo;
Victus enim vicio vicii fit seruus, et in se
Non habet admissum soluere posse iugum:
Ergo perpes ei debetur pena necesse,
Qui sibi peccandi velle perhenne facit.
Parcere nempe deo proprium tamen et misereri
est,
Vnde, licet sero, te reuocare stude.
Figmentum nostrum nouit, set et ipse medetur
1140 Tandem contritum, qui petit eius opem.
Non te desperes, pius est deus, immo deumque
Qui negat esse pium, denegat esse deum:
Hic quasi fons viuus patet omnibus, et vacuari
Vt fons nescit aquis, hic pietate nequit.
Set quia spem nimiam presumpcio sepe fatigat,
Tu tibi spem pone sicut oportet agi:
Vt sapiens speres, tibi sit tua spes moderanda,
Eius habent sancto frena timore regi.
Non timor excedat, quo desperacio mentem
1150 Polluat, immo deum mentis amore time:
Nec spes presumat, set amet commixta timore,633
Sic timor est virtus spes et vterque salus.
Set meditando tamen tua mens de fine remorsa,
Semper amara timens speret habere bona:
Sanccius vt viuas, memorare nouissima semper,
Ledunt nam iacula visa perante minus.
Respice cotidie, mortis quia tempus adesse
Festinat, que simul prospera cuncta ruet.

Hic loquitur quod sunt modo pauci, qui aut


propter celi affectum aut gehenne metum huius
vite voluptatibus renunciant; set quecumque
caro concupiscit, omni postposita racione,
ardencius perficere conantur.
Capm. xxi. Qui sibi commemorans, puto, singula ponderat
eque,
1160 Senciet a fine gaudia vana fore:
Nunc tamen a viciis est quilibet infatuatus,
Quod de fine suo vix memoratur homo.
Quisque suum corpus colit, et de carnis amore
Gaudet, et est anime causa relicta sue:
Gloria nec celi mentes neque pena gehenne
A mundi labe iam reuocare queunt.
Sic caro, sic demon, sic mundus vbique modernos
Deuiat, vt Cristi vix sciat vnus iter:
Est caro que fragilis, demon versutus, iniqus
1170 Mundus, in hoc hominum tempore regna colunt:
Et sic bruta quasi perit humane racionis
Virtus, dum vicium corporis acta regit.
Est homo nunc animal dicam, set non racionis,
Dum viuit bruti condicione pari.
Nescia scripture brutum natura gubernat,
Iudicis arbitrium nec racionis habet:
Est igitur brutis homo peior, quando voluntas
Preter naturam sola gubernat eum.
Corporis, heu! virtus per singula membra
revoluens
1180 Naturam viciis seruit ad acta foris;
Ac anime racio carnis viciata vigore
De virtute nichil interiore sapit.
Morigeri cicius modo sunt derisio plebis,
Et scola peccati iustificabit opus:
Que solet illa viros veteri de more beare,
Iam noua virtuti frena libido mouet.634
Inter eos mundi quibus est donata potestas,
‘Sic volo, sic iubeo,’ sunt quasi iura modo.
Succumbunt iusti clamantes, ‘Ve! quod in orbe
1190 Impia pars hominum singula regna terit.’
Vis prohibet leges, euertunt crimina mores,
Virtus peccati turbine quassa perit:
Mundus turbatur, rerum confunditur ordo,
Involuitque simul omnia grande chaos.
Squalidus in terra sic stat genitor genitusque,
Quod natura suo vix stat in orbe loco.
Liuor et ambicio, gula, fraus, metuenda libido,
Ira, tumor mentis, scismata, laudis amor,
Ambiciosus honor, amor et sceleratus habendi,
1200 Ipse voluptatis vsus et ecce malus,
Furta, rapina, dolus, metus et periuria, testes
Sunt mundi quod erit ammodo nulla fides.

Hic loquitur de variis vindictis occasione


peccati in hoc seculo iam quasi cotidie635
contingentibus, que absque iustorum virorum
meritis et oracionibus nullatenus sedari
poterunt.

Ecce dies veniunt, predixit quos fore Cristus,


Capm. xxii.
Et patuere diu verba timenda dei.
Precessere fames, pestis, motus quoque terre,
Signaque de celo, stat quoque guerra modo:
Nititur aduersus regnum consurgere regnum,
Gens contra gentem, sic patet omne malum.
Vt pecoris sic est hominis fusus modo sanguis,
1210 Victa iacet pietas, et sinit ista deus:
Est et adhuc vindex extenta manus ferientis
Continuans plagas, nec timet vllus eas.
Longanimis domini sentencia sepe moratur,
Vir bonus inmunis nec malus vllus erit.
Quem deus ille ferit, nullo valet orbe tueri,
Si non contritum culpa relinquat eum.
Mortem peccantis non vult deus, immo misertus
Vult vt vertatur, quo sibi vita datur:
Est pius ipse deus, scripturis sicut habemus,
1220 Pro Sodomis Abrahe dixerat ipse pie:
‘Inter iniquorum tot milia tu populorum
Redde decem iustos, et miserebor eis.
Est michi nam soli proprium miseris misereri,
Multis pro paucis parcere curo libens.’
O deus, ergo tibi quid dicam, quomodo nostri
Luctus continui sunt tibi nuga quasi?
Nonne decem iusti modo sunt, meritis vt eorum
Stellifer ipse dies curet in orbe malos?
Aut deus oblitus est immemor ad miserandum,
1230 Dormit vel fingit, aut sibi facta latent.
Verius vt dicam, deus est accensus, et ignis
Fulminat inde Iacob, iraque lata furit:
Sic et plasma suum plasmator abhorret, et ipsum
Torquet pro factis que videt ipse malis.
O, qui mentali videt ex oculo mala nostra
Omnibus in gradibus continuare dies,
Dicere tunc poterit quod talia nullus ab euo
Impunita diu crimina vidit homo.
Quis status ille modo, quin sit transgressus, et
ordo,
1240 Quem iustum dicam, deficit vnde sciam.
Hoc nisi gratis emat, dubito prope quod generalis
Decasus nostre prosperitatis adest:
Set quia de summis gradibus mala progrediuntur,
Est qui summus eos corrigat ipse deus.

Hic loquitur sub compendio recapitulando


finaliter de singulis mundi gradibus, qui
singillatim a debito deuiantes ordine virtutes
diminuendo extingunt, et ea que viciorum sunt
augmentando multipliciter exercent.

Dudum prelatus solum diuina gerebat,


Capm. xxiii.
Nunc propter mundum nescit habere deum:
Curatus cure dudum seruiuit, et ipse
Nunc vagus exterius circuit omne genus:
Dudum presbiteri casti, nunc luxuriosi;
1250 Ocia que querunt plurima dampna fouent:
Ex studio mores dudum didicere scolares,
Nunc tamen econtra stat viciata scola:
Indiuisus amor monachos sibi strinxit vt ardor,
Nunc petit inuidia claustra tenere sua:
Asperitas dudum fratres in carne domabat,
Regula set mollis ammodo parcet eis:636
Dudum milicia fuit et sibi gracia prompta,
Gracia nunc tarda stat, quia vita mala:
Mercator dudum iustum peciit sibi lucrum,
1260 Nunc quoque fraude sua querit habere lucra:
Simplicitas animi fuerat sociata coloni,
Nunc magis indomitum cor gerit ipse ferum:
Lex dudum iusta nulli parcebat amica,
Quam vigor argenti subdit vbique sibi.
Par status imparibus est actibus attenuatus,
Exceditque suum quisque viator iter.
Sic pietas humilis teritur, que superbia regnat;
Liuor adest agilis, torpet et omnis amor:
Permanet ira ferox, et abit paciencia suplex,
1270 Viuit et accidia, sollicitudo perit:
Ebrietas, non sobrietas, tenet ammodo mensas,
Feruet et in viciis crapula plena cibis:
Casta pudicicia dudum precingere lumbos
Affuit, et modo vult soluere luxus eos:
Nuper larga manus inopi sua munera spersit,
Nunc cupit et bursam claudit auara tenax.
Dic modo quot viciis modo sola superbia
mundum
Ad varii sceleris precipitauit opus:637
Dic quot liuor edax acies sua signa sequentes
1280 Subdidit imperio vique metuque suo:
Dic quot auaricie manibus vel mente rapaci
Intendunt populi iura negando dei;
Quot gula deliciis torpet, quot torpor inanes
Carnis adulterio fedat in orbe suo.
Singula nempe vorat anime caro, sic quod vbique
Subdidit inmundam crimine mundus eam:
Singula fallacis mundi dulcedo subegit,
Nos tamen inmundos mundificare nequit.

Iam in fine libri loquitur magis in speciali de


patria illa in qua natus fuerat, vbi quasi
plangendo conqueritur, qualiter honores et
virtutes veteres a variis ibidem erroribus
superuenientibus, vt dicitur, ad presens
multipliciter eneruantur.

Singula que dominus statuit sibi regna per


Capm. xxiiii.
orbem,
1290 Que magis in Cristi nomine signa gerunt,
Diligo, set propriam super omnia diligo terram,
In qua principium duxit origo meum.
Quicquid agant alie terre, non subruor inde,
Dum tamen ipse foris sisto remotus eis;
Patria set iuuenem que me suscepit alumpnum,
Partibus in cuius semper adhero manens,
Hec si quid patitur, mea viscera compaciuntur,
Nec sine me dampna ferre valebit ea:
Eius in aduersis de pondere sum quasi versus;
1300 Si perstet, persto, si cadat illa, cado.
Que magis ergo grauant presenti tempore, saltem
Vt dicunt alii, scismata plango michi.
Vna meo sensu res est, que pessima cunctis
Iam poterit dici fons et origo mali.
Heu! quia iusticia procul abcessit fugitiua,
Cessit et est alibi pax sociata sibi:
Pax, que iusticie dudum solet oscula ferre,
Nunc fugit a terra, ius perit ecce quia.
Plures iam nocui sumunt sibi regna magistri,
1310 Vis iubet et velle, iura nec vlla videt:
Nunc vbi se vertit magnas, sine iure sequntur
Leges, set populus inde subibit onus:
Corpore sicque meo non tantum torqueor, immo
Sunt michi pro minimo res quibus vtar ego.
Non est de modicis quod adulterium modo ledit;
Que caro deposcit omnia namque licent.
In terris aliis Venus et si predominetur,
Exsoluunt meritis hoc aliunde suis;
Est ibi nam posita lex, que communis ad omnes
1320 Iudicat, et causas terminat absque dolo:
Non status aut sexus, non dona, preces, timor aut
quid
Possunt a minimo tollere iura viro:
Et sic iusticia redimit quodammodo culpam
Carnis, que fragili condicione cadit.
Set nos in patria non solum vincimur ista
Ex carnis stimulo, quo stimulatur homo;
Immo suas metas lex transit nescia iuris,
Sicque per obliquas patria nostra vias
Deuiat in tanto, quod, dicunt, amplius ordo
1330 Non erit in nostris partibus: vnde deus
Visitat has partes vindicta, qualis ab euo
In nullo mundi tempore visa fuit.
Non tamen est terra que gaudet in omnibus vna,
Set magis in nostra fit modo virga fera:
Clamor vbique, vide, non solus conqueror ipse;
Culpas tam patulas est reticere nephas:
Sic fleo cum flente, lex fallit, fallor et ipse;
Stat mea nam grauibus patria plena malis.
Nos, quibus assueuit numquam crudeliter vti
1340 Fatum, iam pressos sternit vbique reos.
Que fuerat tellus omni preciosa metallo,
Iam nequit ex plumbo pondus habere suum;638
Dignior argento, fuluo quoque dignior auro,
Nobile que genuit, vix valet esse quadrans.
Nuper dixerunt quicumque venire solebant,
‘Venimus ad portus, vbera terra, tuos.’
Nunc tamen vt sterilis reputaris et es, quia mores
Nunc neque diuicie sunt aliquando tue.
Quo ferar, vnde petam mestis solacia rebus?
1350 Anchora iam nostram non tenet vlla ratem.
Sic mea, que stabilis fuit, infirmatur iniquis
Patria iudiciis, iura negando viris:
Sic gentis domina, quasi iam viduata, tributa
Reddit peccato, statque remota deo.
Sic que morigera fuerat, nunc est viciosa;
Dudum legifera, nunc sine lege fera:
Sic ea que larga fuerat, nunc tollit egena;
Que fuerat sancta, fit Venus ipsa dea:
Est sale iam spersa, fuerat que fructibus ampla,
1360 Et velut vrtica, que solet esse rosa:
Que fuerat pulcra, quasi monstrum stat reputata;
Fit caput in caudam, sic terit omnis eam.
Scandala feda parit nouiter transgressa nouerca,
Omnis que laudis mater et hospes erat:
Que fuit angelica nuper, nunc angulus extat,
Languet et in tenebris sorde repressa magis.
Patria, quam famam dicunt habuisse sororem,
Est magis infamis omnibus ipsa locis:
Que fuerat digne super omnes celsior orbe,
1370 Nunc deus est alibi, subditur ipsa quasi:
Ordine retrogrado quicquid sibi laudis habebat
Cedit, et instabilis vndique spreta iacet.
Firma mouet, ruit alta, terit modo forcia discors
Error, et innumera spergit vbique mala:
Torpescunt proceres, clerus dissoluitur, vrbes
Discordant, leges sunt sine iure graues:
Murmurat indomitus vulgus, concrescit abvsus
Peccati solitus; sic dolet omnis humus.
Hinc puto quod seuit pes terreus in caput auri,
1380 Et lupus agnorum cornua vana timet.639
In meritis hominum solum deus aspicit orbem,
Et sua de facto tempora causat homo.

O sterilis terra morum, sani viduata


Consilii, lesa nec medicamen habens,
Dic vbi fortuna latitat modo, qua reputabas
Nuper in orbe tuum non habuisse parem.
Si Lachesis sortem tibi contulit esse dolosam,
Iam venit ipsa tui r e d d e r e pacta doli:640
Nunc palletque tuis nigris Aurora venenis,
1390 Cuius lux aliis fulsit in orbe magis;
Nuncque iuuentutis flos que tibi creuit habunde
Aret, et a viciis inveterata peris;
Fedaque nunc volucris, venturi nuncia luctus,
Concinit in fatis bubo propheta tuis.
Scit deus hanc causam specialius esse notandam,
Qua locus iste modo distat honore suo:
Hoc scio, quod cunctis locus in prouerbia crescit,
Et quasi nunc speculum denotat omnis eum.
Talia per terras fatali lege geruntur,
1400 Vt reputant, set ego non ita stare puto:
Non est fortuna, que talia causat habenda,
Nec sors, set merita nostra per acta mala.
Qui tamen hanc stare modo credit et hanc
reuocare
Vult, purget crimen, sic reuocabit eam:
Gracia prompta dei querentibus inuenietur,
Nam sibi conuersis vertitur ipse deus.
Dum pia pro pace cecinit processio terre,
Firmaque iusticia fecerat acta sua,
Dumque fides steterat et amor s i n e l a b e
m a n e b a t,641
Tunc, quia pax viguit, sors bona
1410 c u n c t a t u l i t.
N u n c igitur nostra s i t v i t a d e o renouata,642
Ne sors fortuita plus queat esse mala:
Vota vetusta precum redeant domino dominorum,
Vt redeat dominus cum pietate suis;
Per quem pax et honor et tempora sana redibunt,
Que pro peccato sunt fugitiua modo.
Prospera qui veteris vult temporis esse renata,
Reddat et emendet facta priora nouis.
Est deus ipse piis pius et seuerus iniquis,
1420 Sic valet ob meritum quisquis habere deum.
Nos igitur, domine, tua gracia, que solet olim
Ferre reis veniam, te miserante iuuet:
Anticipet pietas tua nos, ne dicat eorum
Gens, ‘Vbi sit dominus, qui solet esse pius?’
Da, precor, accessum lacrimis, mitissime, nostris,
Nam sine te nullum scis quod habemus opem:
Nunc tua pro lapsis nitatur gracia rebus,
Nostra nec anterior sit tibi culpa memor:
Numquam pigra fuit causis tua gracia nostris:
1430 Est vbi nunc illa, que solet esse salus?
Nos peccatores sumus, et tu plus miserator,
Scit bonitasque tua nos opus esse tuum:
Si plus peccaret vir, plura remittere posses,
Materiam venie sors tibi nostra dedit.
Si quociens homines peccant, tua fulmina mittas,
Exiguo presens tempore mundus erit:
A te pendentem sic cum circumspicis orbem,
Auctor, pacificum fac opus esse tuum.
Nos, deus alme, tui serui, quamuis modo tardi,
1440 Te, non fortunam, credimus esse deum:
Scimus te solum super omnes esse colendum;
Sic nostri solus tu miserere, deus!

Hic loquitur qualiter ea que in hoc presenti


libello quasi sompniando de mundi scripsit
erroribus, non ex se tantum, set ex plebis voce
communi concepit. Consulit tamen finaliter
quod, si quis inde se culpabilem senciat,
priusquam nobis peiora succedant tempora,
suam ex humili corde culpam penitens
emendet.

Capm. xxv. Hos ego compegi versus, quos fuderat in me


Spiritus in sompnis: nox erat illa grauis.
Hec set vt auctor ego non scripsi metra libello,
Que tamen audiui trado legenda tibi:
Non tumor ex capite proprio me scribere fecit
Ista, set vt voces plebis in aure dabant.
Quem sua mens mordet, de voce sit ille remorsus,
1450 Curet vt in melius que tulit egra prius:
Qui tamen inmunem se sentit, ab inde quietus643
Transeat, et meritis sic stet vterque suis.
Quem non culpa grauat mea non sentencia culpat,
L e d i t u r h i n c n u l l u s, sit nisi forte reus:644
N e g r a u e t e r g o t i b i, gibbosus namque
panelli645
Et non sanus equs ferre recusat onus.
Non tamen in specie quemquam de pondere culpe
Accuso, set eo se probet intus homo:
Non ego mordaci distrinxi crimine quemquam,
1460 Nec meus vllius crimina versus habet.
Que sompno cepi, vigilans mea scripta peregi,
Sint bona dicta bonis, et mala linquo malis:
Omnis enim mundum gemit esse dei laceratum
Vindicta nostri pro grauitate mali.
Ergo suam culpam contrito corde, priusquam
Consumpti simus, corrigat ipse malus.
Corrigit hic mundum, qui cor retinet sibi
mundum:
Cor magis vnde regat, hec sibi scripta legat.
Quod scripsi plebis vox est, s e t e t i s t a
v i d e b i s,646
Quo clamat populus, est ibi sepe
1470 d e u s.
Qui bonus est audit bona, set peruersus obaudit,
Ad bona set pronus audiat ista bonus.
Hec ita scripta sciat malus, vt bonus ammodo fiat,
Et bonus hec querat, vt meliora gerat.
Mundus non ledit iustum, bene dummodo credit,
Quando set excedit, mundus ad arma redit:
Mundus erit talis, fuerit viuens homo qualis;
Obstet vitalis quilibet ergo malis.
Culpa quidem lata, qua virtus stat
v i c i a t a ,647
Cum non purgata fuerit set
1480 continuata,
Que meruit fata sunt sibi fine data.

648Explicit libellus qui intitulatur Vox


Clamantis, editus precipue super articulo primi
infortunii, quod infortunato Ricardo secundo in
primordiis regni sui, vt audistis, quasi ex dei
virga649 notabiliter in Anglia contingebat. Et
nunc vlterius, quia ipse non inde remorsus,
immo magis ad modum tiranni induratus,
regnum suum assiduis oppressionibus
incessanter flagellare non desistit, diuine
vindicte flagellum vsque in sue deposicionis
exterminium non inmerito assecutus est. Tres
namque tunc regni nobiles super hoc specialius
moti, scilicet Thomas Dux Glouernie, qui
vulgariter dictus est Cignus, Ricardus Comes
Arundellie, qui dicitur Equs, Thomas Comes de
Warrewyk,650 cuius nomen Vrsus, hii vero
vnanimes cum quibusdam aliis proceribus sibi
adherentibus, vt regie malicie fautores delerent,
ad dei laudem regnique commodum in manu
forti iusto animo viriliter insurrexerunt, prout in
hac consequenti cronica, que tripertita est,
scriptor manifestius declarare intendit.

FOOTNOTES:
590 9 magnanimi CEHDL magnatum S
591 27 Consilium CEHDL
592 43 descessit SHG descescit L decessit CED
593 87 da pinguibus CE
594 125 circumprecordia SG
595 160 Est S Et CEHDL
596 167 grossantur S grassantur HDLT crassantur CEG
597 182 dolum SCGDL suum EHT
598 184 scelus] dolus EH
599 187 rutilans albedo set SCGDL albus paries tamen EHT
600 189f.

Sic foris ex auro tumulus splendescit, et intro


Fetet putredo, vermibus esca caro. EHT

DL have both this couplet and that in the text


601 192 falco SCGDL nisus EHT
602 218 pulchra C
603 237 ingenii H (corr.) Ingenuum L assimulari CE
604 256 ipse SL ille CEHD
605 269 Ordinary paragr. in CDL, no paragr. E
606 291 Ordinary paragr. CEDL
607 350 credet CEHGDL credit S
608 409 seruus CE
609 470 estatis C (ras.)
610 490 Passebatque S
611 535 set] et CEL
612 562 sunt] sint CE
613 599 sitis] satis D
614 611 tradidit] contulit CE
615 684 queris SGL mauis (mavis) CEHD
616 691 regno peccato EHL Regni peccato D
617 707 eum CEHDH₂ enim SGLT
618 721 perinterius GLT
619 767 spernens famam C famam serpens L
620 816 iuuat S iuuant EGDLTH₂
621 Cap. xiii. Heading 1 mortui corporis CH
622 843 redolens dudum CEHD
623 903 nisi] sibi C
624 918 et] est S
625 921 nostre D nostri SCEHGL
626 931 imparat C
627 961 fit S sit CEHGDL
628 997 et om. S
629 Cap. xix. Heading 1 duplici CEGL dupplici SHT duplice D
630 1067 Tethis D
631 1095 si SGL sit CEHD
632 1107 Cumque ST Dumque CEHGDL
633 1151 comixta H
634 1186 mouet] tenet EDLT
635 Cap. xxii. Heading 2 quotidie CED
636 1256 parcit CE
637 1278 opes S
638 1342 suum SG suo CEHDL
639 1380 Et lupus SHDL Pastor et CG (ras.) Lupus et E
640 1388 reddere SEHG soluere CDLT
641 1409 f. commune regebat Perstitit in nobis tunc honor atque
salus EDLTH₂ (gerebat E)
642 1411 Sint igitur nostra bona facta deo renouata EDLTH₂
(reuocata L)
643 1451 inmunen S
644 1454 Text SCEG Sic precor vt nullus DLT
645 1455 Text SCEG Detrahet inde michi DL Se trahit inde michi
T
646 1469 f. Text SCEHG (in ista E) per scripta cauebis Que mala
sunt, ideo te dabis atque deo DLTH₂ (perscripta D)
647 1479-81 DLTH₂ have two lines only, as follows:—

Omnibus ipse tamen peior sum, sed


releuamen
Det michi per flamen conditor orbis.
Amen.1480*

648 Explicit, &c. Explicit libellus qui intitulatur Vox Clamantis


(omitting the rest) EDTH₂ Explicit liber intitulatus Vox
clamantis (omitting the rest) L
649 4 virga dei CHG
650 12 Warwyk CH
CRONICA TRIPERTITA651
Ista tripertita, sequitur que, Opus
mente perita humanum est
Cronica seruetur; nam pars que inquirere
pacem et
prima videtur
persequi eam.
Est opus humanum, pars illa Hoc enim
secunda prophanum fecerunt hii tres
Est opus inferni, pars tercia iure proceres de
superni quibus infra fit
Est opus in Cristo. Vir qui bene mencio, vbi
sentit in isto fides interfuit.
Scire potest mira, quid amor sit, Opus inferni
quid sit et ira: est pacem
Est tamen hoc clamor, ‘Omnia turbare,
iustosque regni
vincit Amor.’ interficere. Hoc
enim Ricardus
c a p i t o s u s65
2 dolosa
circumvencione
facere non
timuit.
Opus in
Cristo est
deponere
superbos de
sede et
exalt a r e
humiles.
Hoc enim
deus fecit;
o d i o sum
R i c a rdum de
Solio suo
proiecit, et
pium Henricum
omni dileccione
gratissimum
cum gloria
sublimari
constituit.

Tolle caput mundi, C ter et sex Hic in prima


lustra fer illi, parte653 cronice
Et decies quinque cum septem comp o s i t o r
post super adde: tempora
Tempus tale nota, qui tunc fuit distinguens,654
causas vnde
Anglia mota. regnum fuit in
Dum stat commotus se diuisum,
Ricardus amore postmodum per
remotus, singula
Principio Regis oritur tractabit.
transgressio legis,
Quo fortuna cadit et humus
retrogreda vadit.
Quomodo surrexit populus, quem
non bene rexit,
Te m p u s a d h u c p l a n g i t s u p e r h o c ,
quod cronica tangit.
Libro testante, stat cronica scripta
per ante;
Est alibi dicta, transit nec ab aure
10 relicta:
Audistis mira, vulgaris que tulit
ira:
Omnibus in villis timuit vir iustus
ab illis.
Rex induratum cor semper habet, Qualiter
neque fatum infortunatus rex
Tale remordebat ipsum, qui iure Ricardus,
virgam dei non
carebat:655 metuens, de
malo in peius
Stultorum vile sibi consilium suam semper
iuuenile maliciam
continuauit.
Legerat, et sectam senium dedit
esse reiectam:
Consilio iuuenum spirauerat ille venenum,
Quo bona predaret procerum, quos mortificaret:
Sic malus ipse malis adhesit, eisque sodalis
20 Efficitur, tota regis pietate remota.
Tunc accusare quosdam presumpsit auare,
Vnde catallorum gazas spoliaret eorum.
Tres sunt antiqui proceres, quos regis iniqui
Ira magis nouit, et eos occidere vouit:
Et sic qui cati pellem cupit excoriati,
Fingebat causas fallaci pectore Nota de
clausas. iudicibus illis,
Caucius vt factum sibi possit qui vt regis
errorem
habere subactum,
precipue contra
Leges conduxit, pro parte suaque illos tres
reduxit: proceres quos
Munere corrupti suadente occidere vellet
timoreque rupti iustificarent,
Legis in errorem regi tribuere literas sub
30 fauorem: eorum sigillis
scriptas
Hii tunc legiste, quicquid rex dixerat erronice
iste, composuerunt.
Federa componunt, que sigilla sub
ordine ponunt.
Tunc rex letatur, super hoc quod fortificatur,
Quo magis ad plenum diffundat ille venenum:656
Tunc aderant tales iuuenes, qui sunt speciales,
Laudantes regem, quia vertit sic sibi legem.
Hoc concernentes alii, que dolos Qualiter tres
metuentes, proceres
Ad defendendum statuunt cito quid predicti de
regis malicia
sit agendum.
secrecius
Tunc rex festinat, et ad hoc sua premuniti in sui
iussa propinat,
Vt tres querantur vbi sunt, et ibi defensionem
40 capiantur. roborati sunt.
Tunc tres, qui iusti fuerant et ad arma robusti,
Factum disponunt et ad hoc sua robora ponunt.
Qui fuerant isti proceres, in nomine Cristi
Expedit vt dicam referens, et eis benedicam.
Si non directe procerum cognomina recte,
Hec tamen obscura referam, latitante figura:
Scribere que tendo si mistica verba legendo
Auribus apportant, verum tamen illa reportant.
Sunt Olor, Vrsus, Equs, stat Nota de
eorum quilibet equs, nominibus trium
Non hii diuisi, set in vnum sunt procerum
predictorum
50 quasi visi:
sub figura.
Penna coronata tribus hiis fuit Comes
associata: Marescallus.
Qui gerit S tandem turmam Strenuissimus
comitatur eandem, Comes
Nobilis ille quidem probus et Derbeie.
iuuenis fuit idem,
Sic quasi de celis interfuit ille fidelis:
Hac sub fortuna presens aquilonica Comes
luna657 Northumbrie,
cuius Signum
Non fuit ad sortem, sequitur set
fuit luna
mente cohortem.658 crescens.
Qui solem gessit tenebrosus Qualiter rex,
lumina nescit, cuius Signum
In Troie metas dum vendicat ipse Sol erat, ciues
dietas. Londonienses
Troia fuit prima, per quem sol tendit pro auxilio ab
eis contra
ad yma;
dictos tres
Pallet in eclipsi populus quia non proceres
fauet ipsi: optinendo
Obsistunt turbe Phebo, ne scandat requisiuit; set illi
60 in vrbe, regis maliciam
Dumque suis alis Cignus fuit perplectentes
imperialis. eidem
Fraus tamen obliquas nubes nullatenus
commouit iniquas, consensierunt.
Extera dum rebus temptauit lumina Qualiter rex
Phebus: Comitem
Cestria surrexit, Aper in qua lumina Oxonie, qui per
aprum
rexit, designatur, vt
Regis vexillum fatue signauerat ipse contra tres
illum. proceres
Set conspiranti deus obstat et antedictos
insidianti, gentes
Quo dolus exosos inuoluit fine bellatrices
secum duceret,
dolosos: in partes
Auxilio Cigni, regis pro parte Cestrie vna
maligni 659 cum regio
Si vis queratur, contraria vis vexillo
70 operatur. destinauit.
Querit Aper latebras, fraudes mortisque
tenebras,660
Quo regnum periat regisque superbia fiat;
Cignus et expresse super hiis que cernit adesse
Prouidet, et curam regni colit ipse futuram:
Ducit Aper gentes, quas concitat arma gerentes,
Liber vt hiis pergat proceresque per omnia
spergat.
Cignus vt hoc sciuit, venientibus Qualiter
obuius iuit, quodam die
Belliger et purgat regnum, quo vita Veneris Comes
Oxonie cum
resurgat:
suis
Cum Venus incepit lucem, sors sequentibus in
bella recepit. conspectu
Stat Tetis a parte, cecidit dum ducis
80 Cestria Marte; 661 Glouernie, qui
Thamisie fluctus capiunt de tunc vulpis
caudam in
sanguine luctus: lancea gessit,
Vicit Olor pennis, sit ei quo vita prope villam
perhennis. Oxonie in
fugam se vertit,

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