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MICROORGANISMS IN
SUSTAINABLE AGRICULTURE,
FOOD, AND THE ENVIRONMENT
MICROORGANISMS IN
SUSTAINABLE AGRICULTURE,
FOOD, AND THE ENVIRONMENT
Edited by
Deepak Kumar Verma
Prem Prakash Srivastav, PhD
Apple Academic Press Inc. Apple Academic Press Inc.
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This book is dedicated
to
the memory of remarkable people and
The Father of Microbiology
List of Contributors........................................................................................ xi
List of Abbreviations....................................................................................xiii
Preface......................................................................................................... xix
Index......................................................................................................................421
LIST OF CONTRIBUTORS
Sudhanshi Billoria
Department of Agricultural and Food Engineering, Indian Institute of Technology, Kharagpur 721302,
West Bengal, India.
Bindu Devi
Department of Microbiology, College of Basic Sciences, CSK, Himachal Pradesh Agricultural University,
Palampur 176062, Himachal Pradesh, India.
Sunita Devi
Assistant Professor (Microbiology), Department of Basic Sciences, College of Forestry, University of
Horticulture and Forestry—Nauni, Solan 173230, Himachal Pradesh, India.
Y. K. Jhala
Research Associate, Department of Agricultural Microbiology & Bio-fertilizers Projects, B. A. College
of Agriculture, Anand Agricultural University, Anand 388110, Gujarat, India.
Deepika Kadian
Department of Microbiology, Chaudhary Charan Singh Haryana Agricultural University, Hisar 125004,
Haryana, India.
Mandira Kapri
Department of Food Technology, Maharshi Dayanand University, Rohtak 124001, Haryana, India.
Rakesh Kumar
District Extension Specialist, CCS Haryana Agricultural University, Krishi Vigyan Kendra, Fatehabad
125120, Haryana, India.
Kamla Malik
Assistant Scientist, Department of Microbiology, Chaudhary Charan Singh Haryana Agricultural University,
Hisar 125004, Haryana, India.
S. K. Mehta
District Extension Specialist, CCS Haryana Agricultural University, Krishi Vigyan Kendra, Bhiwani
127021, Haryana, India.
Amrita Narula
Department of Microbiology, Chaudhary Charan Singh Haryana Agricultural University, Hisar 125004,
Haryana, India.
Abhay K. Pandey
Research Associate, Plant Pathology, Plant Health Management Division, National Institute of Plant
Health Management, Department of Agriculture and Cooperation, Ministry of Agriculture, Government
of India, Rajendranagar, Hyderabad 500030, Telangana, India.
Ami Patel
Division of Dairy and Food Microbiology, Mansinhbhai Institute of Dairy & Food Technology, MIDFT,
Dudhsagar Dairy Campus, Mehsana 384002, Gujarat, India.
D. V. Pathak
CCS Haryana Agricultural University, Regional Research Station, Bawal, Rewari 123501, Haryana India.
Amrita Poonia
Centre of Food Science & Technology, Institute of Agricultural Science, Banaras Hindu University,
Varanasi 221005, Uttar Pradesh, India.
P. K. Prabhakar
Department of Agricultural and Food Engineering, Indian Institute of Technology, Kharagpur 721302,
West Bengal, India.
Satish K. Sain
Assistant Director, Plant Health Management, Plant Health Management Division, National Institute
of Plant Health Management, Department of Agriculture and Cooperation, Ministry of Agriculture,
Government of India, Rajendranagar, Hyderabad 500030, Telangana, India.
Nihir Shah
Division of Dairy and Food Microbiology, Mansinhbhai Institute of Dairy & Food Technology, MIDFT,
Dudhsagar Dairy Campus, Mehsana 384002, Gujarat, India.
Harsha N. Shelat
Associate Research Scientist, Department of Agricultural Microbiology & Bio-fertilizers Projects, B. A.
College of Agriculture, Anand Agricultural University, Anand 388110, Gujarat, India.
Ajesh Kumar V.
Department of Agricultural and Food Engineering, Indian Institute of Technology, Kharagpur 721302,
West Bengal, India.
R. V. Vyas
Research Scientist, Department of Agricultural Microbiology & Bio-fertilizers Projects, B. A. College of
Agriculture, Anand Agricultural University, Anand 388110, Gujarat, India.
LIST OF ABBREVIATIONS
2-AP 2-acetyl-1-pyrroline
a.d. Anno Domini
AAB acetic acid bacteria
ABA abscisic acid
ACC aminocyclopropane-1-carboxylate
AFB1 aflatoxin B1
AFDA American Food and Drug Administration
AFM1 aflatoxin M1
ALF alcoholic fermentation
AM arbuscular mycorrhizal
AMD acid mine drainage
ANF santinutritional factors
Aq Ampelomyces quisqualis
ATP adenosine triphosphate
aW water activity
BAs biogenic amines
BGA blue green algae
BNF biological nitrogen fixation
Bt Bacillus thuringiensis
cDNA complementary DNA
CE capillary electrophoresis
CLA conjugated linoleic acid
CMV cucumber mosaic virus
CO2 carbon dioxide
CSS cold-smoked salmon
CTV citrus tristeza virus
Cu2S copper sulfide
CuSO4 copper sulfate
CVD cardiovascular disease
DAP diammonium phosphate
DEEMM diethyl ethoxymethylenemalonate
DHA docosahexaenoic acid
DNA deoxyribonucleic acid
dsRNA double standard RNA
xiv List of Abbreviations
soil, water, and air). This third part of this book is devoted to research oppor-
tunities and describes the environment, water, soil, air pollution, and biore-
mediation, microbiological control of agricultural enemies and pathogens of
agricultural important crop plants.
Part 4: Industrial Microbiology and Microbial Biotechnology both are
associated with the commercial exploitation of microorganisms, which
involve achieving specific goals for the processes and production of useful
products, whether creating new products with monetary value that are of
major economic, environmental, or social importance. There are two key
aspects of industrial microbiology, the first relating to production of valuable
microbial products via fermentation processes, whereas the second aspect is
the role of microorganisms in providing services, particularly for waste treat-
ment and pollution control, which utilizes their abilities to degrade virtually
all natural and man-made products. This part of the book explores the wide
range of industrial microbial processes and products, including traditional
fermented foods and beverages (using yeast technology, citric acid, and lactic
acid fermentations), such as bread, beer, cheese, and wine. In addition, this
part of the book is further employed in the production of numerous chemical
feedstocks (primary and secondary metabolites like enzymes, amino acids)
and products for application in human and animal health), the provision of
animal feed production, alternative energy sources, biofertilizers production
(N2 fixers, phosphate solubilizers, PGPR, BGA, composting, etc. for main-
taining the soil and plant health for sustaining crop productivity and their
importance in organic farming).
With contributions from a broad range of leading researchers, this book
focuses on such areas of microbiology as we discussed above that will
provide a guide to students, instructors, and researchers. It covers the topics
expected of students, instructors, and researchers taking agricultural micro-
biology courses as major. The text in the chapters is suitable for undergrad-
uate and graduate students. In addition, microbiology professionals seeking
recent advanced and innovative knowledge in agriculture will find this book
helpful. It is envisaged that this book will also serve as a reference source
for individuals engaged in microbiology research, processing, and product
development.
With great pleasure, we would like to extend our sincere thanks to all the
learned contributors for the magnificent work they did in making sure that
their timely response, excellent devoted contributions to detail and accuracy
of information presented in this text, along with their consistent support and
cooperation, has made our task as editors a pleasure.
xxii Preface
We feel that we covered most of the topics expected for agricultural micro-
biology in this text. It is hoped that this volume will stimulate discussions and
generate helpful comments to improve upon future volume editions. Efforts
are made to cross reference the chapters as such.
Finally, we acknowledge Almighty God, who provided all the inspira-
tions, insights, positive thoughts, and channels to complete this book project.
CONTENTS
Abstract.........................................................................................................4
1.1 Introduction..........................................................................................4
1.2 History of Fermented Foods................................................................6
1.3 Microorganisms Associated with Fermented Foods............................7
1.4 Classification of Fermented Foods....................................................10
1.5 Benefits of Fermented Foods.............................................................50
1.6 Safety Aspects of Fermented Foods...................................................58
1.7 Future Prospective of the Fermented Foods......................................59
Keywords....................................................................................................60
References...................................................................................................60
4 Microorganisms in Sustainable Agriculture, Food, and the Environment
ABSTRACT
Fermented foods have become an essential part of our daily diet. Various
milk, vegetables, cereals-legumes, meat, and fish-based fermented foods
might have evolved in the dietary, religious, and cultural ethos of individuals
living in the regions of the world and owe their origin. Employing selected
starter strains such as that have an ability to produce flavor components,
vitamins, enzymes, antimicrobial compounds or exopolysaccharides, or
health beneficial microbes, that is, probiotics within the matrix of fermented
foods will help to develop novel functional fermented foods by utilizing the
traditional indigenous technologies. It may help to spread fermented foods
of different regions and provide a range of choice of food to consumers
worldwide. Moreover, industrial manufacturing of fermented foods would
serve to improve the livelihood of rural as well as urban population with
generation of new source of income and employment particularly for poor
and needed.
1.1 INTRODUCTION
NOTE.
It was my intention to have added here a few translations, for the
purpose of giving the reader some idea of modern Arabian poetry;
but I understand that an able hand, and one more practised than
mine, is already employed on the task. A volume, entitled A
Miscellany of French and Oriental Literature, by J. Augoub, will
appear in a few days.[U] I was acquainted with the author, a young
poet of the highest promise, prematurely snatched from his family
and his fame. He was born in Egypt, and had been educated in
France. The original fragments which he has left behind, and
doubtless also these translations, breathe the deep and ardent
colouring of his native skies, combined with the purity of French
taste. These works, published by his widow, are the only legacy he
has bequeathed to his family and his country.
I have inserted in these volumes a few fragments extracted from the
publication here announced, assured that they will but stimulate the
reader’s desire for a further acquaintance with them.
A. de Lamartine.
15th April, 1835.
MAOULS,
Or Popular Romances of the Modern Arabs; extracted
from a Collection entitled, “A Miscellany of French
and Oriental Literature,” by J. Augoub.
Now that thy stature, like the young shoot of a palm, is slender and
graceful, grant me thy caresses. O my best beloved, let us make use
of time as it flies! Close not against love the avenue to thy favour.
Believe me, beauty is evanescent; its empire has never yet been
prolonged for a mortal.
They have compared thee to the queen of the nightly firmament; but
how greatly do they err in their language! Has the moon those
beautiful black eyes, with their sparkling pupils? The rushes bend
and sway before the gentlest breath of the zephyr; thou, who
resemblest them by thy slight figure—thou seest all men bend before
thee!
If the torment of my heart causes happiness to thine, torment me; for
my happiness is bound up in thine,—if, indeed, thine is not far dearer
to me than my own. If thou wishest to take my life—if the sacrifice of
it is necessary to thee—take it, O thou who alone art my life, and
incense not thyself against me!
What harm would it be, young beauty, if thou shouldest treat me with
more justice? Thou wouldest cure my grievous malady by a remedy
which would relieve me from the necessity of having recourse to the
Canon of Avicene.[V] Whenever I contemplate thy beautiful
eyebrows, I recognize in them the graceful contour of the houn;[W]
and thy voice is sweeter to my ear than the sound of the harp and
the cithern.[X]
When my best beloved passed by, the branch of the neighbouring
willow was jealous of her delicate figure; the rose bent her head for
shame when she saw the bright colour of her cheek; and I