Immunity by Equilibrium-1

You might also like

Download as pdf or txt
Download as pdf or txt
You are on page 1of 9

PERSPECTIVES

On the basis of immune equilibrium,


E S S AY
it can be assumed that the immune system
is able to distinguish between ‘good’ and
Immunity by equilibrium ‘bad’ — for example, between mutualistic
and pathogenic microorganisms — and
develop either anti-inflammatory or pro-­
Gérard Eberl inflammatory immune responses11,12.
However, how it would be able to distinguish
Abstract | The classical model of immunity posits that the immune system reacts to
good from bad is still an open question16.
pathogens and injury and restores homeostasis. Indeed, a century of research has In fact, there are three, possibly four, types
uncovered the means and mechanisms by which the immune system recognizes of immune response that are mutually
danger and regulates its own activity. However, this classical model does not fully inhibitory. These include type 1 responses
explain complex phenomena, such as tolerance, allergy, the increased prevalence against intracellular threats (such as viruses,
of inflammatory pathologies in industrialized nations and immunity to multiple intracellular bacteria and tumours), type 2
responses against large extracellular threats
infections. In this Essay, I propose a model of immunity that is based on equilibrium, (such as helminths) and type 3 responses
in which the healthy immune system is always active and in a state of dynamic against extracellular microorganisms (such as
equilibrium between antagonistic types of response. This equilibrium is regulated extracellular bacteria and fungi). Activation
both by the internal milieu and by the microbial environment. As a result, alteration of one type of response inhibits another type,
of the internal milieu or microbial environment leads to immune disequilibrium, and the immune equilibrium is maintained
by the competing immune responses. This
which determines tolerance, protective immunity and inflammatory pathology.
principle forms the basis of the equilibrium
model of immunity. In contrast to earlier
How does the immune system recognize the very existence of autoimmunity and immunological principles, the equilibrium
a wide variety of microorganisms but Treg cells suggests a failure to avoid the model of immunity does not predict how
avoid attacking the body’s own tissues recognition of self, and thus a need for an immune response is triggered (as all
(which are referred to as ‘self ’)? A century tolerance mechanisms. Furthermore, these types of immune response are already active
of research into this question led to principles cannot explain why the immune during the steady state) but instead predicts
two central principles of immunology. system develops self-threatening allergic how this active immune system behaves
The first principle of immunology is reactions, and why allergies and autoimmune when facing new threats, which are almost
self–non-self discrimination1,2, or the pathologies are increasing in industrialized always present in combination. I believe that
recognition of danger 3, altered self and nations in association with greater hygiene the equilibrium model of immunity provides
discontinuity 4. This is achieved through and less exposure to infectious diseases10. a broad but simple and testable framework
several mechanisms, such as the expression On the basis of the principle of self– to explain complex immune phenomena
of innate immune receptors that recognize non-self discrimination, it was assumed such as tolerance, autoimmunity, allergy
microorganism-associated molecular that the immune system is at rest when not and resistance or susceptibility to secondary
patterns (MAMPs) or danger-­associated exposed to pathogens, danger signals or infections. It might also open up new
molecular patterns (DAMPs), the altered self. However, it is now clear that the approaches for immunotherapy.
elimination of developing T cells that react immune system is never at rest, in particular
with self (a process that is known as thymic at mucosal sites11,12 but also systemically 13 The equilibrium model of immunity
selection) and the generation of regulatory and in germ-free conditions14. Indeed, self is The foundations of immunology are rooted
T (Treg) cells. The second principle is the constantly altered and danger is continually in the work of Metchnikoff (1845–1916)
generation and selection of diverse immune present as cells die, tissues are injured, and Paul Ehrlich (1854–1915), who drew on
repertoires5–7. To recognize the large diversity and microorganisms proliferate within and the discovery by Louis Pasteur (1822–1895)
of viral, bacterial, fungal and eukaryotic outside the body. More than a century ago, and Robert Koch (1843–1910) of the
microorganisms, as well as altered self, the Élie Metchnikoff stated that “physiological pathogenic potential of microorganisms
process of somatic V(D)J recombination inflammation” is required to maintain (BOX 1). Therefore, the immune system is
leads to the generation of a large repertoire harmony in animals15. These observations primarily viewed as a system that opposes
of receptors on B cells and T cells8,9, which prompted a third principle of immunology pathogens through elaborate mechanisms
are then selected for by antigens from — immune equilibrium — in which anti-­ of recognition and destruction. However,
microorganisms and altered self. inflammatory forces of the immune system the realization that the immune system
However, these two principles are not regulate pro-inflammatory forces to maintain is in a constant state of activation, even
sufficient to understand several intriguing homeostasis. When the anti-inflammatory in the absence of pathogens, indicates that
aspects of the immune system. For example, forces fail, severe pathology occurs. the immune system does not react only to

524 | AUGUST 2016 | VOLUME 16 www.nature.com/nri


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

pathogens. At mucosal sites in particular, Box 1 | A brief history of pathology and immunology
symbiotic microorganisms induce diverse
immune effector cells that establish a The Greek physician Hippocrates (460–370 BCE) is credited as being among the first to propose that
vital equilibrium between the host and its diseases are not caused by the Gods but by environmental factors, diet and living habits. His medical
microbiota11,12. This is also the situation system was based on humourism, which states that health is determined by the equilibrium, within
an individual, of four fundamental body fluids, the humours. This notion of internal equilibrium is
systemically, where symbiotic viruses
central to the more recent concept of ‘milieu intérieur’, defined by Claude Bernard (1813–1878).
chronically activate the immune system13. In his view, an organism has to ensure internal stability, or homeostasis, as defined later by
Negative regulation has a crucial role Walter Cannon (1871–1945)63, to maintain health in the face of external variations.
in the immune system, a concept that was Directly contradicting humourism, Louis Pasteur (1822–1895) and Robert Koch (1843–1910)
first proposed in the 1970s by Niels Jerne, demonstrated the germ theory of disease, in which the environment is a source of diseases through
Heinz Kohler and Geoffrey Hoffmann infectious microorganisms. The proponents of this theory had to postulate the existence of an
in the context of the immune network immune system that protects the body from pathogenic microorganisms. Élie Metchnikoff
theory 17–19, and by Richard Gershon in the (1845–1916), who was recruited by Pasteur in 1888, demonstrated the existence of phagocytes
context of the suppressor T cell theory 20,21. that destroy microorganisms by ingestion. Paul Ehrlich (1854–1915), a close friend of Koch, showed
Negative regulation has now become an the role of humoral immunity, conveyed by antibodies, in the defence against microorganisms and
bacterial toxins.
immunological paradigm through the
A century of immunology research followed to try to understand how the immune system
characterization of Treg cells, the absence recognizes the enormous diversity of microorganisms, and how it destroys pathogens without
of which leads to dramatic inflammatory destroying the organism that it means to protect. Paradigms emerged, such as the self–non-self
pathology 22–25. It is generally agreed that discrimination principle proposed by Frank Macfarlane Burnet (1899–1985)1 and Niels Jerne
a healthy immune system, as well as a (1911–1994)2. More recently, Polly Matzinger formulated the danger model3, which proposes that
healthy immune response, is based on an the immune system is triggered not only by the recognition of invading microorganisms (non-self),
equilibrium between effector T cells and as discussed by Charles Janeway (1943–2003)131, but also by the danger associated with these
Treg cells, and that it involves regulation microorganisms and, more generally, by injured tissue. Finally, Thomas Pradeu, Sébastien Jaeger
through a variety of molecules, such as and Eric Vivier proposed that the immune system is fundamentally activated by a change in
interleukin‑10 (IL‑10), transforming growth normality or discontinuity4.
An alternative view of immune reactivity, known as the immune network theory, was proposed in
factor‑β (TGFβ), programmed cell death 1
the 1970s by Jerne, Heinz Kohler and Geoffrey Hoffmann17–19. According to this theory, the immune
(PD1; also known as PDCD1), cytotoxic system is composed of a network of cells and antibodies, recognizing both non-self antigens and
T lymphocyte antigen 4 (CTLA4) and CD25 new self-antigens (such as hyper-variable regions of antibodies). This network of recognition
(also known as high-affinity IL‑2 receptor includes both activators and suppressors that maintain the system in a state of equilibrium during
(IL‑2RA))26,27. homeostasis. Disturbance of that equilibrium by a new antigen induces a response, which is
However, Treg cells are not the only followed by a gradual return to homeostasis. Although this theory has been generally abandoned
cells to regulate immune responses. Other by the immunological community, the idea of an equilibrium within the immune system that is
types of immune cells have regulatory maintained by a network of activators and suppressors is a concept that is supported by more
functions, such as regulatory B cells28 recent studies, and encapsulated by the view that an equilibrium between pro-inflammatory and
and myeloid-derived suppressor cells29. anti-inflammatory immune responses is required to maintain health.
Furthermore, it is well known that T helper 1
(TH1) cells, TH2 cells30–32 and TH17 cells
negatively regulate each other in in vitro Type 1 and type 3 responses are induced of strong inflammation and extensive tissue
differentiation assays, and that one type of by microorganisms, and they fit the injury, during which both intracellular and
T helper cell characteristically dominates original defensive role that was assigned extracellular threats may be recognized,
a particular immune response in vivo33. to the immune system by Metchnikoff and lymphoid cells produce both IFNγ and
More generally, immune responses can be Ehrlich. Type 1 responses are shaped by IL‑17 and therefore have a mixed type 1
characterized as antagonistic type 1, type 2 the production of IL‑12 by dendritic cells and type 3 phenotype38,39.
or type 3 responses (with type 3 responses (DCs) and macrophages34 and lead to the Type 2 responses that develop against
defined as those inducing TH17 cells) (BOX 2), activation of natural killer (NK) cells and large organisms, such as helminths, seem
which involve an array of lymphoid, myeloid group 1 innate lymphoid cells (ILC1s)35, to have a different nature and purpose.
and stromal cells that are adapted to the type followed by the activation of TH1 cells, The destruction of these large organisms by
of microorganism, pathogen or injury that is cytotoxic CD8+ T cells and, in mice, IgG2+ immune cells is difficult, and so the immune
affecting the organism. B cells. The main molecular effectors of system constructs a barrier using tissue-
The equilibrium model of immunity type 1 responses are interferon‑γ (IFNγ) repair mechanisms to provide protection40.
proposes that the immune system relies that is produced by lymphoid cells and For example, at mucosal surfaces, type 2
on an equilibrium between these different cytotoxic molecules, such as perforin responses induce mucus production and
types of immune response: an equilibrium and oxygen radicals. Type 3 responses collagen deposition. These responses are
that defines homeostasis. As a consequence, are shaped by the production of IL‑1β shaped by the production of IL‑25, IL‑33
a microorganism or injury that triggers one and IL‑23 by DCs and macrophages36,37, and thymic stromal lymphopoietin (TSLP)
type of response induces the suppression which leads to the activation of ILC3s35 by non-haematopoietic cells41, leading to
of the other types of response. Conversely, and TH17 cells. The type 3 effector phase is the activation of ILC2s35 and eosinophils,
an absence of stimulation of one type of characterized by the production of IL‑17 resulting in the development of TH2 cells and
response leads to the exacerbation of the and IL‑22 by lymphoid cells, antimicrobial IgG1+ or IgE+ B cells and the production of
other types of response, with potentially peptides (AMPs) by epithelial cells and the IL‑4, IL‑5 and IL‑13. Alternatively-activated
pathological consequences (FIG. 1). recruitment of neutrophils. In the context macrophages (AAMs)42 have an important

NATURE REVIEWS | IMMUNOLOGY VOLUME 16 | AUGUST 2016 | 525


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

Box 2 | Molecular regulation of type 1, type 2 and type 3 immunity that represses the others until the infection
is cleared. By contrast, following a decrease
The molecular regulation of type 1, type 2 and type 3 immunity has been extensively studied in one type of trigger, for example, during
in T helper (TH) cells and their innate counterparts, the innate lymphoid cells (ILCs). Each type antibiotic therapy to eliminate extracellular
of TH cell and ILC is induced by one of the master regulator transcription factors: T‑bet induces bacteria that induce type 3 responses, the
TH1 cells and ILC1s, GATA binding protein 3 (GATA3) induces TH2 cells and ILC2s, and retinoic acid
other types of response are dysregulated
receptor-related orphan receptor-γt (RORγt) induces TH17 cells and ILC3s132,133. During
inflammation, the cytokine environment activates specific signal transducers and activators of and exacerbated to levels that may lead
transcription (STATs) that favour the expression of a particular master regulator in naive or to pathological inflammation. I propose
precursor cells. For example, interleukin‑23 (IL‑23) induces the phosphorylation and activation of that the original and intuitive concept of
STAT3 that drives the expression of RORγt, which in turn induces the expression of the effector equilibrium — the basis of Claude Bernard’s
cytokines IL‑17 and IL‑22 (REF. 134). These master regulators function within a network of (1813–1878) principle of ‘milieu intérieur’,
transcription factors that support their lineage-determination function135 and negatively regulate and of Walter Cannon’s (1871–1945) concept
the expression and function of the ‘competing’ master regulators. T‑bet inhibits GATA3 (REF. 136) of homeostasis63 — is a core principle of
and the differentiation of TH17 cells137, whereas GATA3 inhibits both type 1 and type 3 responses132. immunity (BOX 1).
In type 3 cells, STAT3 suppresses type 2 responses56,138,139. The master regulator of regulatory T (Treg)
cells is forkhead box P3 (FOXP3), which binds GATA3 (REF. 140), RORγt27,141 and STAT3 (REF. 140)
Evidence for the equilibrium model
and which dominates to induce its regulatory programme. It should be noted, however, that these
master regulators can have additional roles during the development of lymphoid cells and in Inflammatory pathologies. Type 2 responses
mature effector cells142. For example, GATA3 expression is also required for the development of the drive allergic and pro-fibrotic pathologies
common ILC precursor143 and for the further differentiation of ILC3s into a type 1‑like NKp46+ through the production of IL‑4, IL‑5 and
subset that co‑expresses T‑bet, possibly through the regulation of RORγt144. IL‑13 (REF. 64). By contrast, type 3 responses
are involved in autoimmune inflammatory
diseases, such as inflammatory bowel
role in type 2 responses during tissue (GATA3))54,55 and TH17 cells (retinoic disease, rheumatoid arthritis and multiple
repair 43,44 and were originally described by acid receptor-related orphan receptor-γt sclerosis39,65,66, through the production
Metchnikoff as the phagocytes that eliminate (RORγt))27,56, as well as chemokine receptors of IL‑17, granulocyte–monocyte colony-­
abnormal cells during fetal development45. that are associated with these T helper stimulating factor 36 and lymphotoxin67,
Mixed type 2 and type 3 responses may occur cell subsets. It has been suggested that the whereas type 1 responses are involved
during allergic responses, possibly induced by cytokine environments that induce type 1, in systemic lupus erythematosus (SLE)
concomitant tissue damage and the presence type 2 or type 3 responses also promote a and type 1 diabetes (T1D) through the
of extracellular microscopic particles46. partial differentiation of Treg cells into these production of IFNs68. In industrialized
A type 4 immune response has also been types, allowing them to migrate to effector nations, the decreased incidence of
proposed33,47. This response does not develop sites and to efficiently regulate the associated infectious diseases thanks to better hygiene,
against microorganisms or parasites that T helper cell functions57. In addition, the vaccines and antibiotics, is associated with
infect or injure tissues, but rather aims to generation of Treg cells, in particular, type 3 an increase in the incidence of allergic
block microorganisms and parasites before Treg cells, is induced at the expense of the and autoimmune inflammatory diseases
they reach sensitive tissues. For example, associated effector cells56,58. Nevertheless, this — an association that is described by
in the eye, inflammation is poorly tolerated does not occur during inflammation27, and the hygiene hypothesis10. I propose that
and causes irreversible damage48, and in the type 3 Treg cells do not regulate TH17 cells, but inflammatory pathologies may not only
intestine, the extensive microbiota must instead regulate TH2 cells, in accordance with be a consequence of exacerbated type 1,
be kept away from the epithelium to avoid the equilibrium model of immunity 56. The type 2 or type 3 responses, but may also be
the induction of tissue-damaging chronic inverse situation is also true: type 2 Treg cells a consequence of diminished type 1, type 2
inflammation49,50. Type 4 immunity requires regulate TH17 cells54. or type 3 responses.
secretory IgA, which is released in large Finally, and importantly, although one Epidemiological and experimental
quantities into the intestinal lumen, and type of immune response is dominant at data show that a loss of exposure to
is also released in tears, saliva, sweat one site at a particular moment, different microorganisms (not necessarily pathogens)
and secretions from the genitourinary responses can simultaneously develop at leads to an increased susceptibility to allergic
tract and the respiratory epithelium. IgA different sites or sequentially develop at the responses69. For example, children raised
has a broad ‘anti-inflammatory’ effect51, same site. For example, a type 3 response that on farms are less susceptible to developing
partly because it neutralizes microorganisms is induced by symbiotic microbiota in the allergies than those not raised on farms70.
before they reach the host tissues where intestine does not preclude the presence of a Conversely, children who are treated at an
they would induce type 1 or type 3 immune type 2 response in adipose tissues59,60, at least early age with multiple doses of antibiotics
responses52. Other elements of the proposed in the steady state61. Furthermore, destructive are more susceptible to allergies than those
type 4 responses include the production of type 1 and type 3 responses must be followed who are not exposed to repeated antibiotic
mucus49 and AMPs, which are also secreted by repair-associated type 2 responses to therapy 71,72. The same effect is found in
in substantial amounts by epithelial cells50. restore homeostasis in the affected tissue40,62. mice treated early in life with antibiotics73
So, do Treg cells constitute a separate type In summary, the four arms of the or maintained in germ-free conditions
of response that is dedicated to suppressing all immune system are balanced in the healthy until weaning 74, and germ-free mice also
other responses? Treg cells have been described state. The normal microbiota induces all four develop high levels of serum IgE14. Several
that express the signature transcription types of response and thereby establishes a mechanisms have recently been reported
factors of TH1 cells (T‑bet; also known as healthy balance. During infection or injury, to explain how the microbiota inducing
TBX21)53, TH2 cells (GATA binding protein 3 one arm of the immune system is stimulated type 3 responses represses pro-allergic type 2

526 | AUGUST 2016 | VOLUME 16 www.nature.com/nri


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

responses. First, exposure of pre-weaned IFNs that are induced by murine norovirus responses are enhanced if the adipose tissue
mice to the microbiota leads to long-term (MNV) block the elevated type 2 response is inflamed — for example, after a diet- and
epigenetic modification of the gene encoding that is found in germ-free mice76, and IFNs inflammation-induced increase in intestinal
CXC-chemokine ligand 16 (CXCL16), directly block ILC2s77,78. permeability that causes microorganisms
which recruits invariant NKT cells that Another case of pathological interference and microbial products to access the
produce IL‑13 and increase susceptibility to between type 2 and type 3 responses circulation and to reach fat tissues61,83,84. As a
type 2 inflammation74. Second, we showed involves fat metabolism, and the regulation consequence, type 2 responses are inhibited
that the microbiota induces TH17 cells and by AAMs of blood glucose consumption and blood glucose levels rise, increasing the
RORγt+ Treg cells that inhibit the generation to generate heat 79. Monocytes that are risk of type 2 diabetes.
of type 2 T cell responses56. Third, it has recruited to fat are converted to AAMs Type 3 immunity is regulated by
been shown that B cells respond directly to by IL‑4 that is produced by eosinophils80, viral and bacterial infections that induce
bacterial signals to limit serum IgE levels which are themselves recruited by IL‑5 that type 1 responses85. In particular, IL‑17
and basophil numbers75. In addition, type I is produced by ILC2s81,82. However, type 3 production that is required against bacterial

a Extracellular
microorganisms
Helminths

Type 2 response Type 3 response

IL-33 IL-23

IL-4 IL-17 Exclusion of


microorganisms

Intracellular viruses
and bacteria, and
tumours IFNγ
sIgA
IL-12
TGFβ
Type 1 response

Type 4 response

b Health Autoimmunity Allergy

1 2 3 4 1 2 3 4 1 2 3 4
Type of response Type of response Type of response
Figure 1 | The equilibrium model of immunity. a | The equilibrium model microorganisms and to protect sensitive tissues from potentially destructive
of immunity is based on the idea that the immune system is never at rest but inflammation, through the secretion of, for example,
Naturelarge amounts
Reviews of IgA and
| Immunology
instead relies on a dynamic equilibrium between four types of competing and antimicrobial peptides into the gut lumen or eye secretions. b | Health is
mutually inhibitory immune responses. Type 1 responses are directed against determined by an equilibrium between these four types of response.
intracellular threats, such as viruses, some bacteria and tumours, whereas Following an infection that induces one type of response, the other types of
type 3 responses are directed against extracellular micro­organisms, such as response are inhibited. Conversely, the absence of one type of response leads
most bacteria and fungi. Type 2 responses are directed against large parasites, to the exacerbation (red) of the other types, potentially leading to
such as helminths, which cannot be destroyed by type 3 responses but that inflammatory pathologies, such as autoimmunity and allergy.
can be kept at bay by the construction of barriers through the production of IFNγ, interferon-γ; IL, interleukin; sIgA, secretory IgA; TGFβ, transforming
mucus and collagen. Finally, type 4 responses develop to exclude growth factor-β.

NATURE REVIEWS | IMMUNOLOGY VOLUME 16 | AUGUST 2016 | 527


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

infections is inhibited by type 1 and type 2 Conversely, helminths that induce Predictions from the equilibrium model
IFNs86–88. Furthermore, helminth-induced type 2 responses impair antiviral type 1 Thymus-derived Treg cells and repair
type 2 responses limit autoimmune responses. Mice that are infected with MNV responses. A key principle of adaptive
inflammation, at least in rodent models89,90. develop virus-specific CD8+ T cell and immunity is the clonal selection of
These mechanisms might explain the TH1 cell responses. However, pre-infection immature T cells in the thymus107–109,
increased incidence of arthritis, multiple with the helminth Trichinella spiralis during which T cells that recognize
sclerosis and inflammatory bowel disease blocks the generation of virus-specific self-antigens are eliminated (through
in industrialized countries, where there T cells and leads to increased viral loads99. negative selection). An apparent
is a decreased incidence of infections by Microbiota-induced type 3 responses also violation of this rule is the generation in
helminths, viruses and intracellular bacteria block antiviral type 1 responses. Mice the thymus of Treg cells that react against
such as Mycobacterium tuberculosis 10. treated with antibiotics resist MNV self 110,111. It is generally thought that
Conversely, a loss in the diversity of bacterial infection through the production of thymus-derived Treg (tTreg) cells are generated
symbionts, as a consequence of increased IFNλ by epithelial cells and the activation to suppress responses by effector T cells
antibiotic use, may lead to a loss of type 3 of the transcription factors signal that weakly react to self-antigen; these cells
responses and, therefore, to an increase transducer and activator of transcription 1 react with self-antigen too weakly to be
in autoimmunity that is driven by type 1 (STAT1) and interferon-­regulatory factor 3 eliminated during negative selection, but do
responses, such as SLE and T1D68. In (IRF3), which are mediators of type 1 react strongly enough to have the potential
support of this mechanism, segmented immunity. However, in untreated mice, to become autoreactive disease-causing
filamentous bacteria, intestinal symbionts the microbiota induces type 3 immunity cells during inflammation112. So, tTreg cells
and potent inducers of type 3 responses91,92, and blocks this type 1 response100. Finally, are selected in the thymus owing to their
are associated with protection from T1D infectious microorganisms or helminths intermediate reactivity to self.
in mice93,94. can manipulate the immune system for The equilibrium model of immunity
their own benefit. For example, the fungus suggests an alternative explanation for
Infectious pathologies. Recent data Aspergillus fumigatus induces a potent the generation of tTreg cells, as well as a
have provided evidence to explain how pro-allergic type 2 response in the lungs101, new classification for thymus-derived
a pre-existing infection can influence but neutrophils and IL‑17‑mediated and peripherally derived Treg (pTreg) cells
the outcome of a second infection (or type 3 responses are required for its (FIG. 2). We have recently reported that, in
superinfection). For example, mice that are efficient elimination102. the intestine, microbiota-induced pTreg cells
latently infected with a γ‑herpesvirus develop express RORγt, which is the marker for type 3
increased resistance to superinfection Tumours. Type 1 cytotoxic responses, which lymphoid cells, and initially differentiate
by the bacteria Listeria monocytogenes 95. involve CD8+ T cells and NK cells, are most along a pathway that is common to TH17 cells
Both microorganisms elicit a type 1 response effective for fighting tumours. However, and then through a distinct pathway in
by the host, and the increased level of IFNγ tumours induce several responses that the presence of retinoic acid56. By contrast,
that is induced by the latent (symbiotic) virus inhibit antitumour type 1 responses. Treg cells that express GATA3, the marker
confers protection against L. monocytogenes. Tumour-induced type 3 responses favour for type 2 lymphoid cells, can develop in the
However, the presence of a virus can also tumour growth through the activation of the absence of the microbiota56 and constitute
increase susceptibility to superinfection anti-apoptotic transcription factor STAT3. another major population of Treg cells in
by a microorganism that is controlled by a In a mouse model of spontaneous breast the intestine54,55 and adipose tissue113,114.
different type of response. For example, cancer, tumour-infiltrating macrophages On the basis of these observations, we
a previous infection with lymphocytic produce IL‑1β, which induces the production proposed that Treg cells differentiate according
choriomeningitis virus (LCMV) increases of IL‑17 by γδ T cells and the recruitment of to the associated effector T cells into type 1,
the susceptibility of mice to a subsequent neutrophils103. The neutrophils inhibit the type 2 or type 3 Treg cells, and thus determine
infection with L. monocytogenes or activation of tumour-specific CD8+ T cells the level of the local immune response56. This
Staphylococcus aureus through a mechanism and thereby facilitate tumour metastasis. suggests that recognition of self by developing
that involves the type 1 IFN-mediated Tumours also induce TGFβ-driven tTreg cells, which occurs in the absence of
apoptosis of granulocytes96. In this ‘anti-inflammatory’ responses, which inhibit microbiota-derived antigens, should lead to
case, the type 1 response that is induced tumour-specific CD8+ T cells by promoting the generation of type 2 Treg cells, which may
by the virus blocks the type 3 response the generation of Treg cells (which type contribute to tissue repair when activated in
that is mediated by the granulocytes to of Treg cell remains to be determined)104. the context of sterile tissue injury. During the
limit the early spread of bacteria. Similarly, TGFβ also promotes the generation of late stages of an infection that require tissue
a previous infection with influenza A IgA+ B cells, which are the proposed main repair, type 2 Treg cells may also contribute
virus or respiratory syncytial virus renders effectors of type 4 responses105. Recently, IgA+ to the inhibition of type 1 and type 3
mice highly susceptible to superinfection B cell responses were found in the tumour responses54,115. This idea could be tested by
with pneumonia-inducing bacteria, such microenvironment of mice treated with the assessing the expression of molecules that are
as Neisseria meningitides 97, Streptococcus chemotherapeutic drug oxaliplatin. The associated with type 2 immunity and tissue
pneumoniae, Haemophilus influenzae, generation of such B cells was dependent repair by tTreg cells.
Streptococcus pyogenes and S. aureus 98. on TGFβ receptor signalling and led to the
These viruses may also induce type 2 repair expression of IL‑10 and PD1 ligand 1 (also Neonatal and oral tolerance. Immune
responses during later stages of infection known as CD274), which inhibited the tolerance is considered to be a general
that further interfere with the antibacterial cytotoxic T cell-mediated response against mechanism of immune control that is
type 3 response. the tumour 106. required to avoid inflammatory pathology.

528 | AUGUST 2016 | VOLUME 16 www.nature.com/nri


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

However, as in the case of Treg cells, increases susceptibility to pathological Resistance to infection. An important
tolerance may instead reflect an inhibition tissue damage and life-threatening implication of the equilibrium model of
of one type of immunity by another organ dysfunction. immunity is that resistance to infection
type33 (FIG. 2). Oral tolerance is a mechanism by is partly determined by the state of
For example, neonatal tolerance occurs which antigen delivered through the the immune system before infection
on the exposure of neonates to antigens116. ­gastrointestinal tract suppresses effector (FIG. 3). For example, a primary infection
It is commonly accepted that the immature responses against that antigen throughout confers resistance or susceptibility to
status of the neonatal adaptive immune the organism117. However, although a subsequent infection, depending on
system leads to the elimination rather tolerance suggests an absence of response, the types of response that are engaged
than to the activation of T cells specific for intestinal responses to orally-delivered by the two infectious agents. This idea
such antigens. This view is an extension antigens are not eliminated but instead may be generalized to the modulation
of the principle, formulated by Frank comprise type 3 Treg cells56 and the of the immune system by the symbiotic
Macfarlane Burnet (1899–1985), that production of IgA47,118. Consistent with microbiota, which includes type 1‑inducing
embryonic antigens are defined as self the equilibrium model of immunity, the viruses, type 2‑inducing helminths and
and should therefore induce tolerance1. induced type 3 response inhibits type 1 and allergens, and type 3‑inducing bacteria
However, as discussed above for the type 2 responses against the orally-delivered and fungi. Therefore, analysis of the immune
generation of tTreg cells, neonatal antigens, antigen. Accordingly, RORγt-deficient state of an organism before infection, in
as well as embryonic antigens, may induce mice, which lack type 3 immunity, develop terms of the balance between the different
type 2 cells (TH2 cells, type 2 Treg cells, a pathological form of type 1 immunity types of immune response, may allow
ILC2s and AAMs) and thereby induce against intestinal antigens119. Similarly, the researchers to predict the outcome of an
the repair responses that are required type 4 response comprising IgA inhibits infection or the efficiency of immunotherapy
to control developing tissues. Neonatal the other types of response. Oral tolerance and vaccination.
type 2 responses are predicted to inhibit can be breached by the administration of
the type 1 and type 3 responses induced antigen together with mucosal adjuvants, Preventive and therapeutic avenues
by most experimental challenges33. It may such as cholera toxin, which shifts the type 4 On the basis of the equilibrium model of
also be predicted that an absence of type 2 IgA response to a local type 3 response120 immunity, novel types of preventive and
responses during the neonatal period or to a systemic type 2 response121. therapeutic strategies may be developed.

Extracellular
Tissue microorganisms
repair

Thymic and Bacteria- and fungi-


neonatal tolerance induced tolerance

pTreg cell
Type 2 response Type 3 response
tTreg cell

RORγ t
GATA3
Intracellular Exclusion of
microorganisms microorganisms
and tumours sIgA
pTreg cell B cell

T-bet

Oral
Virus- and tumour- tolerance
Type 1 response induced tolerance
Type 4 response

Figure 2 | Tolerance in the equilibrium model of immunity. The four bacteria that induce type 3 responses and helminths that induce type 2
types of immune response are mutually inhibitory. Therefore, tolerance, as responses. Regulatory T (Treg) cells are an important component
Nature Reviews of mutual
| Immunology
measured by the elimination of one type of response, may in many cases regulation, but they do not lack effector functions: thymus-derived Treg (tTreg)
reflect inhibition by another type of response rather than a total absence of cells react to self-antigens, not only to inhibit type 1 and type 3 responses,
immune responses. For example, measures of the type 1 response against a but also to promote tissue repair115, which is a trait of type 2 responses.
virus (interferon-γ (IFNγ) levels and antigen-specific cytotoxic T lymphocyte GATA3, GATA binding protein 3; pTreg , peripherally derived Treg ;
responses) can be significantly decreased by the presence of symbiotic sIgA, secretory IgA.

NATURE REVIEWS | IMMUNOLOGY VOLUME 16 | AUGUST 2016 | 529


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

For example, to protect against viruses response that is induced by the bacterial using non-pathogenic bacteria, fungi or
or tumours type 1 responses need to be microbiota (which is inhibited by the viruses, or MAMPs derived from these
induced. This can be achieved either by antibiotics) inhibits the production of microorganisms127, that inhibit pro-allergic
directly enhancing type 1 responses or antiviral IFNλ by epithelial cells100. Type 2 type 2 responses. Furthermore, the induction
by blocking type 2 and type 3 responses. or type 3 responses can be further targeted of type 1 or type 2 responses using viruses,
William Coley famously used S. pyogenes using neutralizing antibodies against key helminths, allergens or related MAMPs,
to treat patients with cancer in the cytokines, such IL‑33 or IL‑23, or using could be used to inhibit autoimmune
1890s122, a strategy that was later shown antagonists against key transcription factors type 3 inflammation, an approach that has
to involve either tumour necrosis factor such as RORγt 125,126. Similar strategies may been investigated using helminths128,129
(TNF) or IL‑12 (REF. 123). In addition, one be developed to enhance antihelminth type 2 and helminth-derived proteins89,130.
of the most effective treatments against responses or antibacterial and antifungal Approaches that are based on the positive
non-invasive bladder cancer is intravesical type 3 responses. manipulation of the immune equilibrium
delivery of Mycobacterium bovis bacillus Conversely, the immune equilibrium have an important benefit compared with
Calmette-Guérin (BCG), which is a strong could be manipulated to dampen the use of drugs that target microorganisms
inducer of type 1 responses124. To increase allergic and autoimmune inflammation. or inflammation. These approaches
the safety and feasibility of this approach, Current strategies for treating allergy and re‑equilibrate the immune system and
MAMPs could be used or synthesized inflammation rely on targeting effectors, such strengthen the equilibrium through the
to promote type 1 responses. Antibiotic as histamine and TNF, or the use of broad presence of ‘regulatory’ microorganisms,
treatment has been shown to prevent anti-inflammatory drugs. Instead, it might be rather than weaken it through drugs or
persistent infection by MNV, as the type 3 possible to induce type 1 or type 3 responses losses to the host microbiota.
Gérard Eberl is at the Institut Pasteur,
Microenvironment and Immunity Unit, 75724 Paris,
France, and the Institut National de la Santé et de la
• Increased resistance to Recherche Médicale (INSERM) U1224,
viruses, intracellular 75724 Paris, France.
bacteria and tumours
• Decreased susceptibility Correspondence to G.E.
to allergy gerard.eberl@pasteur.fr
• Decreased resistance to
helminths, extracellular doi:10.1038/nri.2016.75
bacteria and fungi
Published online 11 Jul 2016
• Decreased tissue repair
1 2 3 4 1. Burnet, F. M. & Fenner, F. The Production of
Type of response Antibodies 2nd edn (Macmillan and Co., 1949).
2. Jerne, N. K. The somatic generation of immune
recognition. Eur. J. Immunol. 1, 1–9 (1971).
3. Matzinger, P. Tolerance, danger, and the extended
family. Annu. Rev. Immunol. 12, 991–1045
• Increased resistance (1994).
to helminths 4. Pradeu, T., Jaeger, S. & Vivier, E. The speed of
• Increased tissue repair change: towards a discontinuity theory of immunity?
Nat. Rev. Immunol. 13, 764–769 (2013).
• Decreased resistance to 5. Jerne, N. K. The natural-selection theory of antibody
viruses, tumours, bacteria formation. Proc. Natl Acad. Sci. USA 41, 849–857
and fungi (1955).
• Increased susceptibility 6. Ehrlich, P. in Nobel Lecture, December 11, 1908
to allergy (Elsevier Publishing Company, 1967).
7. Burnet, F. M. The Clonal Selection Theory of Acquired
1 2 3 4 1 2 3 4 Immunity (Vanderbilt Univ. Press, 1959).
Type of response Type of response 8. Weigert, M. G., Cesari, I. M., Yonkovich, S. J.
& Cohn, M. Variability in the lambda light chain
• Symbionts (viruses, bacteria sequences of mouse antibody. Nature 228,
and helminths) 1045–1047 (1970).
• Homeostatic tissue repair 9. Hozumi, N. & Tonegawa, S. Evidence for somatic
• Increased resistance to rearrangement of immunoglobulin genes coding for
• Allergens and oral antigens extracellular bacteria variable and constant regions. Proc. Natl Acad.
and fungi Sci. USA 73, 3628–3632 (1976).
• Decreased susceptibility 10. Bach, J. F. The effect of infections on susceptibility to
to allergy autoimmune and allergic diseases. N. Engl. J. Med.
• Decreased resistance 347, 911–920 (2002).
to viruses, tumours and 11. Sansonetti, P. J. War and peace at mucosal surfaces.
helminths Nat. Rev. Immunol. 4, 953–964 (2004).
• Decreased tissue repair 12. Sansonetti, P. J. & Di Santo, J. P. Debugging how
bacteria manipulate the immune response. Immunity
1 2 3 4 26, 149–161 (2007).
13. Virgin, H. W., Wherry, E. J. & Ahmed, R.
Type of response Redefining chronic viral infection. Cell 138, 30–50
(2009).
Figure 3 | Microorganisms in the equilibrium model of immunity. The induction of one type of 14. Cahenzli, J., Koller, Y., Wyss, M., Geuking, M. B.
response by microorganisms or helminths inhibits the other types of response.
Nature Thus,
Reviews viruses are
| Immunology & McCoy, K. D. Intestinal microbial diversity during
predicted to decrease susceptibility to allergy, but at the same time to decrease tissue repair early-life colonization shapes long-term IgE levels.
Cell Host Microbe 14, 559–570 (2013).
(a property of type 2 responses) and increase susceptibility to infection by helminths, bacteria and 15. Metchnikoff, E. Lectures on the Comparative
fungi. By contrast, helminths are predicted to increase tissue repair, but at the same time decrease Pathology of Inflammation Delivered at Pasteur
resistance to viruses and bacteria and increase susceptibility to allergy. Following the same logic, most Institute in 1891 (Dover Press, 1989).
16. Eberl, G. A new vision of immunity: homeostasis of
bacteria and fungi are predicted to decrease susceptibility to allergies, but also to increase the superorganism. Mucosal Immunol. 3, 450–460
susceptibility to viruses, tumours and helminths, and to inhibit tissue repair. (2010).

530 | AUGUST 2016 | VOLUME 16 www.nature.com/nri


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

17. Jerne, N. K. Towards a network theory of the immune 45. Tauber, A. I. & Chernyak, L. Metchnikoff and the 73. Russell, S. L. et al. Early life antibiotic-driven changes
system. Ann. Immunol. (Paris) 125C, 373–389 (1974). Origins of Immunology: From Metaphor to Theory in microbiota enhance susceptibility to allergic asthma.
18. Hoffmann, G. W. A theory of regulation and self-nonself (Oxford Univ. Press, 1991). EMBO Rep. 13, 440–447 (2012).
discrimination in an immune network. Eur. J. Immunol. 46. Besnard, A. G. et al. Dual role of IL‑22 in allergic 74. Olszak, T. et al. Microbial exposure during early life
5, 638–647 (1975). airway inflammation and its cross-talk with IL‑17A. has persistent effects on natural killer T cell function.
19. Rowley, D. A., Kohler, H. & Cowan, J. D. Am. J. Respir. Crit. Care Med. 183, 1153–1163 (2011). Science 336, 489–493 (2012).
An immunologic network. Contemp. Top. Immunobiol. 47. Matzinger, P. & Kamala, T. Tissue-based class control: 75. Hill, D. A. et al. Commensal bacteria-derived signals
9, 205–230 (1980). the other side of tolerance. Nat. Rev. Immunol. 11, regulate basophil hematopoiesis and allergic
20. Gershon, R. K. & Kondo, K. Cell interactions in the 221–230 (2011). inflammation. Nat. Med. 18, 538–546 (2012).
induction of tolerance: the role of thymic lymphocytes. 48. Forrester, J. V., Xu, H., Kuffova, L., Dick, A. D. 76. Kernbauer, E., Ding, Y. & Cadwell, K. An enteric virus
Immunology 18, 723–737 (1970). & McMenamin, P. G. Dendritic cell physiology and can replace the beneficial function of commensal
21. Gershon, R. K. A disquisition on suppressor T cells. function in the eye. Immunol. Rev. 234, 282–304 bacteria. Nature 516, 94–98 (2014).
Transplant Rev. 26, 170–185 (1975). (2010). 77. Moro, K. et al. Interferon and IL‑27 antagonize the
22. Germain, R. N. Maintaining system homeostasis: the 49. Van der Sluis, M. et al. Muc2‑deficient mice function of group 2 innate lymphoid cells and type 2
third law of Newtonian immunology. Nat. Immunol. 13, spontaneously develop colitis, indicating that MUC2 is innate immune responses. Nat. Immunol. 17, 76–86
902–906 (2012). critical for colonic protection. Gastroenterology 131, (2016).
23. Bennett, C. L. et al. The immune dysregulation, 117–129 (2006). 78. Duerr, C. U. et al. Type I interferon restricts type 2
polyendocrinopathy, enteropathy, X‑linked syndrome 50. Vaishnava, S. et al. The antibacterial lectin RegIIIγ immunopathology through the regulation of group 2
(IPEX) is caused by mutations of FOXP3. Nat. Genet. promotes the spatial segregation of microbiota and innate lymphoid cells. Nat. Immunol. 17, 65–75
27, 20–21 (2001). host in the intestine. Science 334, 255–258 (2011). (2016).
24. Brunkow, M. E. et al. Disruption of a new forkhead/ 51. Mkaddem, S. B. et al. IgA, IgA receptors, and their anti- 79. Thomas, S. A. & Palmiter, R. D. Thermoregulatory and
winged-helix protein, scurfin, results in the fatal inflammatory properties. Curr. Top. Microbiol. Immunol. metabolic phenotypes of mice lacking noradrenaline
lymphoproliferative disorder of the scurfy mouse. 382, 221–235 (2014). and adrenaline. Nature 387, 94–97 (1997).
Nat. Genet. 27, 68–73 (2001). 52. Macpherson, A. J. & Uhr, T. Induction of protective 80. Qiu, Y. et al. Eosinophils and type 2 cytokine signaling
25. Wildin, R. S. et al. X‑linked neonatal diabetes mellitus, IgA by intestinal dendritic cells carrying commensal in macrophages orchestrate development of functional
enteropathy and endocrinopathy syndrome is the bacteria. Science 303, 1662–1665 (2004). beige fat. Cell 157, 1292–1308 (2014).
human equivalent of mouse scurfy. Nat. Genet. 27, 53. Koch, M. A. et al. The transcription factor T‑bet controls 81. Lee, M. et al. Activated type 2 innate lymphoid cells
18–20 (2001). regulatory T cell homeostasis and function during type 1 regulate beige fat biogenesis. Cell 160, 74–87 (2015).
26. Josefowicz, S. Z., Lu, L. F. & Rudensky, A. Y. Regulatory inflammation. Nat. Immunol. 10, 595–602 (2009). 82. Brestoff, J. R. et al. Group 2 innate lymphoid cells
T cells: mechanisms of differentiation and function. 54. Wohlfert, E. A. et al. GATA3 controls Foxp3+ regulatory promote beiging of white adipose tissue and limit
Annu. Rev. Immunol. 30, 531–564 (2012). T cell fate during inflammation in mice. J. Clin. Invest. obesity. Nature 519, 242–246 (2015).
27. Lochner, M. et al. In vivo equilibrium of 121, 4503–4515 (2011). 83. Burcelin, R., Garidou, L. & Pomie, C. Immuno-
proinflammatory IL‑17+ and regulatory IL‑10+ Foxp3+ 55. Schiering, C. et al. The alarmin IL‑33 promotes microbiota cross and talk: the new paradigm of
RORγt+ T cells. J. Exp. Med. 205, 1381–1393 (2008). regulatory T‑cell function in the intestine. Nature 513, metabolic diseases. Semin. Immunol. 24, 67–74
28. Mauri, C. & Bosma, A. Immune regulatory function of 564–568 (2014). (2012).
B cells. Annu. Rev. Immunol. 30, 221–241 (2012). 56. Ohnmacht, C. et al. The microbiota regulates type 2 84. Kim, K. A., Gu, W., Lee, I. A., Joh, E. H. & Kim, D. H.
29. Serafini, P., Borrello, I. & Bronte, V. Myeloid suppressor immunity through RORγt+ T cells. Science 349, High fat diet-induced gut microbiota exacerbates
cells in cancer: recruitment, phenotype, properties, and 989–993 (2015). inflammation and obesity in mice via the TLR4
mechanisms of immune suppression. Semin. Cancer 57. Wohlfert, E. & Belkaid, Y. Plasticity of Treg at infected signaling pathway. PLoS ONE 7, e47713 (2012).
Biol. 16, 53–65 (2006). sites. Mucosal Immunol. 3, 213–215 (2010). 85. Yang, J. Y. et al. Enteric viruses ameliorate gut
30. Mosmann, T. R. & Coffman, R. L. TH1 and TH2 cells: 58. Sefik, E. et al. Individual intestinal symbionts induce a inflammation via toll-like receptor 3 and toll-like
different patterns of lymphokine secretion lead to distinct population of RORγ+ regulatory T cells. Science receptor 7‑mediated interferon-β production. Immunity
different functional properties. Annu. Rev. Immunol. 7, 349, 993–997 (2015). 44, 889–900 (2016).
145–173 (1989). 59. Hams, E., Locksley, R. M., McKenzie, A. N. 86. Henry, T. et al. Type I IFN signaling constrains IL‑17A/F
31. Bettelli, E. et al. Reciprocal developmental pathways & Fallon, P. G. Cutting edge: IL‑25 elicits innate secretion by γδ T cells during bacterial infections.
for the generation of pathogenic effector TH17 and lymphoid type 2 and type II NKT cells that regulate J. Immunol. 184, 3755–3767 (2010).
regulatory T cells. Nature 441, 235–238 (2006). obesity in mice. J. Immunol. 191, 5349–5353 (2013). 87. Wu, V. et al. Plasmacytoid dendritic cell-derived IFNα
32. Harrington, L. E. et al. Interleukin 17‑producing CD4+ 60. Molofsky, A. B. et al. Innate lymphoid type 2 cells modulates Th17 differentiation during early Bordetella
effector T cells develop via a lineage distinct from the sustain visceral adipose tissue eosinophils and pertussis infection in mice. Mucosal Immunol. 9,
T helper type 1 and 2 lineages. Nat. Immunol. 6, alternatively activated macrophages. J. Exp. Med. 210, 777–786 (2016).
1123–1132 (2005). 535–549 (2013). 88. Chong, W. P. et al. NK‑DC crosstalk controls the
33. Matzinger, P. Friendly and dangerous signals: is the 61. Kim, H. Y. et al. Interleukin‑17‑producing innate autopathogenic Th17 response through an innate IFN-
tissue in control? Nat. Immunol. 8, 11–13 (2007). lymphoid cells and the NLRP3 inflammasome facilitate γ‑IL‑27 axis. J. Exp. Med. 212, 1739–1752 (2015).
34. Trinchieri, G. & Gerosa, F. Immunoregulation by obesity-associated airway hyperreactivity. Nat. Med. 89. Finlay, C. M. et al. Helminth products protect against
interleukin‑12. J. Leukoc. Biol. 59, 505–511 (1996). 20, 54–61 (2014). autoimmunity via innate type 2 cytokines IL‑5 and
35. Eberl, G., Colonna, M., Di Santo, J. P. & 62. Bleriot, C. et al. Liver-resident macrophage necroptosis IL‑33, which promote eosinophilia. J. Immunol. 196,
McKenzie, A. N. Innate lymphoid cells: a new orchestrates type 1 microbicidal inflammation and 703–714 (2016).
paradigm in immunology. Science 348, aaa6566 type‑2‑mediated tissue repair during bacterial infection. 90. Reddy, A. & Fried, B. An update on the use of
(2015). Immunity 42, 145–158 (2015). helminths to treat Crohn’s and other autoimmunune
36. Cua, D. J. et al. Interleukin‑23 rather than 63. Cannon, W. B. Organization for physiological diseases. Parasitol. Res. 104, 217–221 (2009).
interleukin‑12 is the critical cytokine for autoimmune homeostasis. Phys. Rev. IX, 399–431 (1929). 91. Gaboriau-Routhiau, V. et al. The key role of segmented
inflammation of the brain. Nature 421, 744–748 64. Wick, G. et al. The immunology of fibrosis. filamentous bacteria in the coordinated maturation of
(2003). Annu. Rev. Immunol. 31, 107–135 (2013). gut helper T cell responses. Immunity 31, 677–689
37. Sutton, C., Brereton, C., Keogh, B., Mills, K. H. 65. Geremia, A. et al. IL‑23‑responsive innate lymphoid (2009).
& Lavelle, E. C. A crucial role for interleukin (IL)-1 in cells are increased in inflammatory bowel disease. 92. Ivanov, I. I. et al. Induction of intestinal Th17 cells by
the induction of IL‑17‑producing T cells that mediate J. Exp. Med. 208, 1127–1133 (2011). segmented filamentous bacteria. Cell 139, 485–498
autoimmune encephalomyelitis. J. Exp. Med. 203, 66. Wu, H. J. et al. Gut-residing segmented filamentous (2009).
1685–1691 (2006). bacteria drive autoimmune arthritis via T helper 17 93. Kriegel, M. A. et al. Naturally transmitted segmented
38. Klose, C. S. et al. A T‑bet gradient controls the fate cells. Immunity 32, 815–827 (2010). filamentous bacteria segregate with diabetes
and function of CCR6–RORγt+ innate lymphoid cells. 67. Van Praet, J. T. et al. Commensal microbiota influence protection in nonobese diabetic mice. Proc. Natl Acad.
Nature 494, 261–265 (2013). systemic autoimmune responses. EMBO J. 34, Sci. USA 108, 11548–11553 (2011).
39. Buonocore, S. et al. Innate lymphoid cells drive 466–474 (2015). 94. Sofi, M. H. et al. pH of drinking water influences the
interleukin‑23‑dependent innate intestinal pathology. 68. Theofilopoulos, A. N., Baccala, R., Beutler, B. composition of gut microbiome and type 1 diabetes
Nature 464, 1371–1375 (2010). & Kono, D. H. Type I interferons (α/β) in immunity and incidence. Diabetes 63, 632–644 (2014).
40. Allen, J. E. & Sutherland, T. E. Host protective roles of autoimmunity. Annu. Rev. Immunol. 23, 307–336 95. Barton, E. S. et al. Herpesvirus latency confers
type 2 immunity: parasite killing and tissue repair, flip (2005). symbiotic protection from bacterial infection. Nature
sides of the same coin. Semin. Immunol. 26, 329–340 69. Prioult, G. & Nagler-Anderson, C. Mucosal immunity 447, 326–329 (2007).
(2014). and allergic responses: lack of regulation and/or lack 96. Navarini, A. A. et al. Increased susceptibility to
41. Saenz, S. A., Taylor, B. C. & Artis, D. Welcome to the of microbial stimulation? Immunol. Rev. 206, 204–218 bacterial superinfection as a consequence of innate
neighborhood: epithelial cell-derived cytokines license (2005). antiviral responses. Proc. Natl Acad. Sci. USA 103,
innate and adaptive immune responses at mucosal 70. von Mutius, E. & Vercelli, D. Farm living: effects on 15535–15539 (2006).
sites. Immunol. Rev. 226, 172–190 (2008). childhood asthma and allergy. Nat. Rev. Immunol. 10, 97. Alonso, J. M. et al. A model of meningococcal
42. Gordon, S. & Martinez, F. O. Alternative activation of 861–868 (2010). bacteremia after respiratory superinfection in influenza
macrophages: mechanism and functions. Immunity 71. Foliaki, S. et al. Antibiotic use in infancy and symptoms A virus-infected mice. FEMS Microbiol. Lett. 222,
32, 593–604 (2010). of asthma, rhinoconjunctivitis, and eczema in children 6 99–106 (2003).
43. Knipper, J. A. et al. Interleukin‑4 receptor α signaling and 7 years old: International Study of Asthma and 98. McCullers, J. A. The co‑pathogenesis of influenza
in myeloid cells controls collagen fibril assembly in Allergies in Childhood Phase III. J. Allergy Clin. Immunol. viruses with bacteria in the lung. Nat. Rev. Microbiol.
skin repair. Immunity 43, 803–816 (2015). 124, 982–989 (2009). 12, 252–262 (2014).
44. Sadtler, K. et al. Developing a pro-regenerative 72. Droste, J. H. et al. Does the use of antibiotics in early 99. Osborne, L. C. et al. Virus-helminth coinfection
biomaterial scaffold microenvironment requires childhood increase the risk of asthma and allergic reveals a microbiota-independent mechanism of
T helper 2 cells. Science 352, 366–370 (2016). disease? Clin. Exp. Allergy 30, 1547–1553 (2000). immunomodulation. Science 345, 578–582 (2014).

NATURE REVIEWS | IMMUNOLOGY VOLUME 16 | AUGUST 2016 | 531


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.
PERSPECTIVES

100. Baldridge, M. T. et al. Commensal microbes and 116. Streilein, J. W. Neonatal tolerance: towards an 132. Zhu, J. & Paul, W. E. Peripheral CD4+ T‑cell
interferon-λ determine persistence of enteric murine immunogenetic definition of self. Immunol. Rev. 46, differentiation regulated by networks of cytokines and
norovirus infection. Science 347, 266–269 (2015). 123–146 (1979). transcription factors. Immunol. Rev. 238, 247–262
101. Skov, M., Poulsen, L. K. & Koch, C. Increased antigen- 117. Wu, H. Y. & Weiner, H. L. Oral tolerance. Immunol. Res. (2010).
specific Th‑2 response in allergic bronchopulmonary 28, 265–284 (2003). 133. Serafini, N., Vosshenrich, C. A. & Di Santo, J. P.
aspergillosis (ABPA) in patients with cystic fibrosis. 118. Cerutti, A., Chen, K. & Chorny, A. Immunoglobulin Transcriptional regulation of innate lymphoid cell fate.
Pediatr. Pulmonol 27, 74–79 (1999). responses at the mucosal interface. Annu. Rev. Nat. Rev. Immunol. 15, 415–428 (2015).
102. Margalit, A. & Kavanagh, K. The innate immune Immunol. 29, 273–293 (2011). 134. Ivanov, I. I. et al. The orphan nuclear receptor RORγt
response to Aspergillus fumigatus at the alveolar 119. Lochner, M. et al. Microbiota-induced tertiary directs the differentiation program of proinflammatory
surface. FEMS Microbiol. Rev. 39, 670–687 (2015). lymphoid tissues aggravate inflammatory disease in IL‑17+ T helper cells. Cell 126, 1121–1133 (2006).
103. Coffelt, S. B. et al. IL‑17‑producing γδ T cells and the absence of RORγt and LTi cells. J. Exp. Med. 208, 135. Ciofani, M. et al. A validated regulatory network for
neutrophils conspire to promote breast cancer 125–134 (2011). Th17 cell specification. Cell 151, 289–303 (2012).
metastasis. Nature 522, 345–348 (2015). 120. Datta, S. K. et al. Mucosal adjuvant activity of cholera 136. Usui, T. et al. T‑bet regulates Th1 responses through
104. Yu, P. et al. Intratumor depletion of CD4+ cells toxin requires Th17 cells and protects against essential effects on GATA‑3 function rather than on
unmasks tumor immunogenicity leading to the inhalation anthrax. Proc. Natl Acad. Sci. USA 107, IFNG gene acetylation and transcription. J. Exp. Med.
rejection of late-stage tumors. J. Exp. Med. 201, 10638–10643 (2010). 203, 755–766 (2006).
779–791 (2005). 121. Snider, D. P., Marshall, J. S., Perdue, M. H. & Liang, H. 137. Mukasa, R. et al. Epigenetic instability of cytokine and
105. Coffman, R. L., Lebman, D. A. & Shrader, B. Production of IgE antibody and allergic sensitization transcription factor gene loci underlies plasticity of the
Transforming growth factor β specifically enhances of intestinal and peripheral tissues after oral T helper 17 cell lineage. Immunity 32, 616–627
IgA production by lipopolysaccharide-stimulated immunization with protein Ag and cholera toxin. (2010).
murine B lymphocytes. J. Exp. Med. 170, 1039–1044 J. Immunol. 153, 647–657 (1994). 138. Milner, J. D. et al. Impaired TH17 cell differentiation
(1989). 122. Coley, W. B. The treatment of malignant tumors by in subjects with autosomal dominant hyper-IgE
106. Shalapour, S. et al. Immunosuppressive plasma cells repeated inoculations of erysipelas. With a report of syndrome. Nature 452, 773–776 (2008).
impede T‑cell-dependent immunogenic chemotherapy. ten original cases. 1893. Clin Orthop Relat Res, 3–11 139. Minegishi, Y. et al. Dominant-negative mutations in
Nature 521, 94–98 (2015). (1991). the DNA-binding domain of STAT3 cause hyper-IgE
107. Sprent, J., Lo, D., Gao, E. K. & Ron, Y. T cell selection 123. Tsung, K. & Norton, J. A. Lessons from Coley’s Toxin. syndrome. Nature 448, 1058–1062 (2007).
in the thymus. Immunol. Rev. 101, 173–190 (1988). Surg. Oncol. 15, 25–28 (2006). 140. Rudra, D. et al. Transcription factor Foxp3 and its
108. Kisielow, P., Bluthmann, H., Staerz, U. D., 124. Silverstein, M. J., DeKernion, J. & Morton, D. L. protein partners form a complex regulatory network.
Steinmetz, M. & von Boehmer, H. Tolerance in Malignant melanoma metastatic to the bladder. Nat. Immunol. 13, 1010–1019 (2012).
T‑cell-receptor transgenic mice involves deletion Regression following intratumor injection of BCG 141. Zhou, L. et al. TGF-β-induced Foxp3 inhibits TH17 cell
of nonmature CD4+8+ thymocytes. Nature 333, vaccine. JAMA 229, 688 (1974). differentiation by antagonizing RORγt function. Nature
742–746 (1988). 125. Solt, L. A. et al. Suppression of TH17 differentiation 453, 236–240 (2008).
109. Vukmanovic, S., Bevan, M. J. & Hogquist, K. A. and autoimmunity by a synthetic ROR ligand. Nature 142. Tindemans, I., Serafini, N., Di Santo, J. P.
The specificity of positive selection: MHC and 472, 491–494 (2011). & Hendriks, R. W. GATA‑3 function in innate and
peptides. Immunol. Rev. 135, 51–66 (1993). 126. Huh, J. R. et al. Digoxin and its derivatives suppress adaptive immunity. Immunity 41, 191–206 (2014).
110. Jordan, M. S. et al. Thymic selection of CD4+CD25+ TH17 cell differentiation by antagonizing RORγt 143. Yagi, R. et al. The transcription factor GATA3 is critical
regulatory T cells induced by an agonist self-peptide. activity. Nature 472, 486–490 (2011). for the development of all IL‑7Rα‑expressing innate
Nat. Immunol. 2, 301–306 (2001). 127. Hammad, H. et al. House dust mite allergen induces lymphoid cells. Immunity 40, 378–388 (2014).
111. Annacker, O., Pimenta-Araujo, R., Burlen-Defranoux, O. asthma via Toll-like receptor 4 triggering of airway 144. Zhong, C. et al. Group 3 innate lymphoid cells
& Bandeira, A. On the ontogeny and physiology of structural cells. Nat. Med. 15, 410–416 (2009). continuously require the transcription factor GATA‑3
regulatory T cells. Immunol. Rev. 182, 5–17 (2001). 128. Finlay, C. M., Walsh, K. P. & Mills, K. H. Induction of after commitment. Nat. Immunol. 17, 169–178
112. Sakaguchi, S. et al. Immunologic tolerance maintained regulatory cells by helminth parasites: exploitation for (2016).
by CD25+ CD4+ regulatory T cells: their common role the treatment of inflammatory diseases. Immunol. Rev.
in controlling autoimmunity, tumor immunity, and 259, 206–230 (2014). Acknowledgements
transplantation tolerance. Immunol. Rev. 182, 18–32 129. Weinstock, J. V. & Elliott, D. E. Helminth infections The author thanks M. Daëron, T. Pradeu, N. Cerf-Bensussan,
(2001). decrease host susceptibility to immune-mediated A. Freitas and B. Marsland for the many discussions, ideas,
113. Feuerer, M. et al. Lean, but not obese, fat is enriched diseases. J. Immunol. 193, 3239–3247 (2014). corrections and critical reading of the manuscript. The author
for a unique population of regulatory T cells that affect 130. Driss, V. et al. The schistosome glutathione also thanks members of the Microenvironment and Immunity
metabolic parameters. Nat. Med. 15, 930–939 S‑transferase P28GST, a unique helminth protein, unit of the Institut Pasteur for discussions and experiments
(2009). prevents intestinal inflammation in experimental over the years that led to the ideas presented in this Essay, as
114. Kolodin, D. et al. Antigen- and cytokine-driven colitis through a Th2‑type response with mucosal well as the students and postdoctoral researchers of
accumulation of regulatory T cells in visceral adipose eosinophils. Mucosal Immunol. 9, 322–335 (2015). the Department of Immunology of the Institut Pasteur for the
tissue of lean mice. Cell. Metab. 21, 543–557 (2015). 131. Janeway, C. A. Jr. Approaching the asymptote? Forest seminar series and critical reading of the manuscript.
115. Arpaia, N. et al. A distinct function of regulatory Evolution and revolution in immunology. Cold Spring
T cells in tissue protection. Cell 162, 1078–1089 Harb. Symp. Quant. Biol. 1989. 54: 1–13 J. Immunol. Competing interests statement
(2015). 191, 4475–4487 (2013). The author declares no competing interests.

532 | AUGUST 2016 | VOLUME 16 www.nature.com/nri


©
2
0
1
6
M
a
c
m
i
l
l
a
n
P
u
b
l
i
s
h
e
r
s
L
i
m
i
t
e
d
.
A
l
l
r
i
g
h
t
s
r
e
s
e
r
v
e
d
.

You might also like