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Renate, Journal Manager, 4314-16859-1-CE
Renate, Journal Manager, 4314-16859-1-CE
Renate, Journal Manager, 4314-16859-1-CE
Summary 2004), but the first two techniques are time and labor inten-
sive. The RAPD technique is fast and easy, since it does not
Twelve cultivars (Vitis vinifera L.) were subjected to require knowledge of the sequences of the markers and can
RAPD analysis in order to estimate the genetic diversity produce abundant polymorphic fragments. RAPD analysis
among these genotypes and to analyse their genetic rela- is one of the techniques that has been used successfully to
tionships. The study was performed using 28 primers that reveal genetic variations among different plant taxa (SKOULA
generated 120 polymorphic fragments. There was genetic et al. 1999, ECHEVERRIGARAY et al. 2001, VICCINI et al. 2004,
variation among the cultivars with values of genetic diver- GOLAN-GOLDHIRSH et al. 2004).
sity ranging from 0.419 to 0.642 using the Jaccard coeffi- The aim of our work was to find the most useful primers
cient. UPGMA analysis of distance matrix resulted in a for further analysis of the cultivars indigenous to the
dendrogram with three clusters. The dendrogram shows Carpathian Basin, to identify the grape cultivars and to in-
that the cultivars of our study can be distinguished to a vestigate if RAPD markers could provide systematically
relatively high degree. Results were compared with the taxo- meaningful information.
nomic classification and with the synonyms of the cultivars.
The RAPD technique was useful for identification and dis-
crimination of these grape cultivars. Material and Methods
Correspondence to: Dr. M. KOCSIS, University of Pécs, Faculty of Sciences, Institute of Biology, Ifjúság u. 6, 7624 Pécs, Hungary. Fax:
+36-72-501-520. E-mail: mkocsis@gamma.ttk.pte.hu
88 M. KOCSIS et al.
Table 1
1. Bajor, kék provar. mesocarpa Banat, Serbia Bajnár, Gohér, Augster blauer, Cerni
(blue) subprovar. banatica Moslavez
2. Bánáti rizling provar. mesocarpa Banat, Serbia Kreáca, Kriáca, Creata, Zakkelweiss,
subprovar. banatica Rizling banatsky
3. Demjén ? ? Budai gohér
4. Ezerjó provar. mesocarpa Upper-Danube Budai fehér, Hárslevelű, Kolmreifler,
subprovar. tacica Tausendgute, Trummertraube
5. Furmint, fehér provar. mesocarpa Hungary Demjén, Gemeiner, Görin, Zapfner,
(white) subprovar. hungarica Szigeti, Som, Moslavac, Mosler, Tokay
6. Gohér, fehér provar. mesocarpa Hungary Aranyos sárga, Ágas bajor, Bajor,
(white) subprovar. hungarica Cserbajor, Hulló bajor, Guhér, Augster
7. Hárslevelű provar. microcarpa Zemplen Mountain, Lipovina, Lindeblattrige, Feuilles de
subprovar. zemplenica Hungary tilleul, Garsz levelju
8. Izsáki, fehér provar. mesocarpa unknown Izsáki sárfehér, Fehér kadarka, Fehér
(white) subprovar. macedonica dinka, Német dinka, Weiss-Steinschiller
9. Királyleányka hybrid of Kövérszőlő Transsylvania Dánosi leányka, Danesdörfer-Königsast,
and Leányka Feteasca regale, Galbene de Ardeal
10. Kövidinka provar. microcarpa Slavonia, Croatia Rosentraube, Werschätzer, Steinschiller,
subprovar. sirmica Ruzsica, Dinka rossa
11. Mézes provar. microcarpa Transdanubia, Hungary Sárfehér, Mézesfehér, Medovec,
subprova. carpatica Goldtraube, Honigtraube, Bieli medenac
12. Sárfehér provar. mesocarpa Hungary Alföldi, Ardai, Cseki, Glenovetz,
subprovar. pannonica Silberweiss, Sperlin
tion products were analysed on 1.5 % agarose gel electro- Results and Discussion
phoresis in 0.5x TBE buffer, stained with ethidium bromide
and photographed under UV light using a BioDoc-It Sys- Twelve cultivars autochtonous in the Carpathian Basin
tem. From a preliminary study of 40 RAPD primers (Operon were studied by RAPD markers in order to evaluate the de-
Technologies Inc.), we selected 28 primers based on the gree of genetic diversity. As an initial step, a total of 40 arbi-
presence of polymorphism. RAPDs have often been criti- trary 10-mer primers were first screened on 6 cultivars, under
cized for low reproducibility; in order to avoid this phenom- the above mentioned amplification conditions. Only 28 in-
enon we always used highly constant conditions and all formative primers were retained, due to their ability to pro-
reactions were repeated at least twice. Among replicate runs duce polymorphic, unambiguous and stable RAPD markers
inconsistencies were observed, but faint and non-reproduc- (Tab. 2). Various banding patterns were revealed by differ-
ible bands were excluded from the analysis. ent primers, we used only polymorphic fragments of high
D a t a a n a l y s i s : The positions of scorable RAPD intensity and moderate size between 100 and 3000 bp. A
bands were transformed into a binary character matrix (‘1’ minimum of 1 (OPB-08, OPG-18) and a maximum of 8 (OPA-
for the presence and ‘0’ for the absence of a band at a par- 18, OPG-06, OPG-14, OPN-05) unambiguously amplified
ticular position), which was entered in the RAPDistance bands were generated, with a total of 120 polymorphic bands,
computer program (ARMSTRONG et al. 1994). These data were and with an average of 4.3 bands per primer. Examples of the
used for calculation of pairwise genetic distances among banding patterns obtained are shown in Fig. 1. No single
cultivars using the Jaccard coefficient. The computer pro- primer permitted the differentiation of all 12 cultivars.
gram calculated the degree of genetic dissimilarity between The ability to differentiate the tested cultivars by RAPD
each pair of the 12 cultivars using the simple equation: JC = bands suggested that this technique may provide a rapid
1-a/(a+b+c), where „a” is the number of bands shared by and inexpensive method for the identification of cultivars
plant „x” and plant „y”, „b” is the number of bands in plant indigenous in the Carpathian Basin, even between
„x”, and „c” is a number of bands in plant „y”. The Jaccard- phenotypically similar grape cultivars (YE et al. 1998). The
coefficient ignores absence matches (PODANI 1997). The dis- RAPD method can solve one of the major problems of vari-
tance matrix was used for cluster analysis using the etal identification in grapevines, the existence of homonyms
unweighted pair-group method with arithmetic averages and synonyms, particularly with regard to varieties that have
(UPGMA). The dendrogram was generated using SYN-TAX been cultivated for centuries and are widely distributed
5.0 (PODANI 1993). (BORREGO et al. 2002).
Genetic diversity among twelve grape cultivars indigenous to the Carpathian Basin 89
Table 3
Bajor, Bánáti Demjén Ezerjó Furmint, Gohér, Hárs- Izsáki, Király- Kövi- Mézes Sár-
kék rizling fehér fehér levelű fehér leányka dinka fehér
Bajor, kék -
Bánáti rizling 0.511 -
Demjén 0.475 0.505 -
Ezerjó 0.559 0.630 0.602 -
Furmint, fehér 0.525 0.552 0.604 0.548 -
Gohér, fehér 0.463 0.544 0.419 0.573 0.450 -
Hárslevelű 0.543 0.552 0.536 0.512 0.512 0.523 -
Izsáki, fehér 0.527 0.536 0.612 0.483 0.465 0.556 0.533 -
Királyleányka 0.444 0.560 0.528 0.604 0.523 0.516 0.558 0.426 -
Kövidinka 0.545 0.488 0.539 0.642 0.534 0.454 0.551 0.489 0.527 -
Mézes 0.533 0.602 0.543 0.538 0.555 0.500 0.571 0.525 0.449 0.510 -
Sárfehér 0.505 0.580 0.582 0.593 0.511 0.522 0.563 0.483 0.471 0.465 0.455 -
Jaccard coefficient
0.55 I. II. III.
0.5
0.45
0.4
Dissimilarity
0.35
0.3
0.25
0.2
0.15
0.1
0.05
0
Sárfehér
Bajor
Gohér
Bánátir
Demjén
Izsáki
Mézes
Hársleve
Kövidink
Ezerjó
Furmint
Királyl
Fig. 2: Dendrogram of grape cultivars based on 120 RAPD amplification products illustrating the genetic relationship among the analysed
cultivars.
tion analyses. STAVRAKAKIS et al. (1998) used 11 RAPD prim- (10) and Mézes (11) is provar. microcarpa, but they are in
ers resulting in 115 polymorphic bands to identify and dis- different subclucters of the dendrogram. Bajor (1) and Bánáti
criminate 14 Muscat grape cultivars. ERGÜL et al. (2002) used rizling (2) are in the same taxonomic category (subprovar.
110 polymorphic bands from 22 RAPD markers to identify banatica), Furmint (5) and Gohér (6) are in subprovar.
17 Turkish grape cultivars. Obviously, the more bands are hungarica, but neither pair can be found in the same
scored and the more plants are studied the higher will be the subcluster. We note that there is no relation between taxo-
statistical significance of the calculation. About 100 bands nomic categories or supposed origin and the dendrogram
should be enough to obtain statistically significant results. obtained by our results. We note only that the cultivars
NÉMETH’s (1967, 1970) taxonomic classification indicates examined represent a diverse grouping of Carpathian basin
the supposed origin of the cultivars (Tab. 1). About cultivars.
6 cultivars originate from Hungary, Ezerjó (4) and Hárslevelű Consistent with other results, our RAPD analysis al-
(7) from the northern part of Hungary, Mézes (11) from lowed discrimination among grape cultivars (YE et al. 1998,
Transdanubia. Three of the cultivars (Bajor (1), Bánáti rizling VIDAL et al. 1999). On the basis of the RAPD profiles, the
(2) and Kövidinka (10)) originate from “south” (Serbia, resulting distance values and the dendrogram, it can be con-
Croatia), and Királyleányka (9) from “east” (Transsylvania). cluded that all the cultivars of our analysis are different to a
The taxonomic classification of Hárslevelű (7), Kövidinka relatively high degree. We shall continue working on other
Genetic diversity among twelve grape cultivars indigenous to the Carpathian Basin 91
cultivars with primers having the most polymorphic patterns IBÁNEZ, J.; ANDRÉS, M.T.; MOLINO, A.; BORREGO, J.; 2003: Genetic study
and with microsatellite analysis. The preservation of these of key spanish grapevine varieties using microsatellite analysis.
Am. J. Enol. Vitic. 54, 22-30.
grapevines is important for germplasm and breeding, for LEAL, F.; CASTRO, I.; ORTIZ, J. M.; MARTÍN, J. P.; GUEDES-PINTO, H.; PINTO-
social-economic reasons and for the local cultural tradition. C ARNIDE , O.; 2004: Characterization of Portuguese grapevine
cultivars using random amplified polymorphic DNA markers.
ISHS Acta Horticulturae 652, 401-405.
LUO, S. L.; HE, P. C.; ZHENG, X. Q.; ZHOU, P.; 2001: Genetic diversity in
Acknowledgments wild grapes native to China based on randomly amplified poly-
morphic DNA (RAPD) analysis. Acta Bot. Sinica 43, 158-163.
NÉMETH, M.; 1967: Ampelográfiai album, termesztett borszőlőfajták
We are grateful to ERZSÉBET KISS (Szent István University, I. (Ampelographic album, cultivated grapevine cultivars I.),
Gödöllő) for her help, to SÁNDOR CSETE (University of Pécs, De- Mezőgazdasági Kiadó, Budapest, Hungary.
partment of Botany) and RÓBERT MÁTICS (University of Pécs, De- NÉMETH, M; 1970: Ampelográfiai album, termesztett borszőlőfajták
partment of Genetic) for introducing us into the appropriate com- II. (Ampelographic album, cultivated grapevine cultivars II.),
puter programs. The research was supported by the Hungarian Mezőgazdasági Kiadó, Budapest, Hungary.
NOVY, R. G.; KOBAK, C.; GOFFREDA, J.; VORSA, N.; 1994: RAPDs identify
Scientific Research Fund (OTKA D42219).
varietal misclassification and regional divergence in cranberry
(Vaccinum macrocarpon (Ait.) Purch). Theor. Appl. Genet. 88,
1004-1010.
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