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2 - Recombinant Phage Antibody System. Amersham - Removed EDITADO
2 - Recombinant Phage Antibody System. Amersham - Removed EDITADO
2 - Recombinant Phage Antibody System. Amersham - Removed EDITADO
instructions
Warning
For research use only.
Not recommended or
intended for diagnosis of
disease in humans or
animals.
Do not use internally or
externally in humans or
animals.
Page finder
Handling
Components 2
Storage
The kits should be stored Safety warnings and precautions 3
according to the storage Description 4
instructions included with
individual modules Overview 5
Expiry
For expiry details see outer The Power of the technology 6
packaging of individual Immune response 8
modules
Antibody structure 10
Components M13 life cycle and vector systems 12
Mouse ScFv Module
Recombinant phage antibody system 25
Primed first-strand reaction Mouse ScFv Module 25
mixes (10): FPLCpure™
(Details in separate booklet)
Cloned Murine Reverse
Transcriptase, random Expression Module 29
hexadeoxyribonucleotides (Details in separate booklet)
[pd(N)6], RNAguard™, Detection Module 31
RNase/DNase-free BSA, (Details on Certificate of Analysis)
dATP, dCTP, dGTP, and Anti-E Tag Antibody 33
dUTP in aqueous buffer. (Details in separate booklet)
Control mRNA: Mouse
spleen mRNA in RNase- References 35
free water. Patent and licence information 37
DTT solution: 200 mM DTT
solution. Legal 40
RNase-free water: Treated Product information 40
with diethyl pyrocarbonate
(DEPC).
Heavy primer 1: 5' variable
heavy chain primer in
water (upstream primer).
Heavy primer 2: 3' variable
heavy chain primer in
water (downstream
primer).
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Expression Module
pCANTAB 5 E: Aqueous solution
(50 ng/µl) in TE buffer
(pH 7.6).
M13KO7 helper phage: Titred
phage in YT medium.
E. coli TG1 cells: Lyophilized.
E. coli HB2151 cells:
Lyophilized.
10× One-Phor-All buffer Plus:
Aqueous solution.
Control insert: A10B, Sfi I/Not I
digested.
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Overview
The Recombinant Phage Antibody System integrates fundamental con-
cepts and techniques from two very diverse fields of biology. To
understand the system requires that the researcher possess a basic
knowledge of the immunology and molecular biology involved. It is the
intent of this overview to provide this information. Five sections are
presented:
• The power of the technology (page 6)
• Immune response (page 8)
• Antibody structure (page 10)
• M13 life cycle and vector systems (page 12)
• Recombinant Phage Antibody System (page 25)
An extensive flowchart (starting on page 18) depicts the main steps of
the Recombinant Phage Antibody System and includes a timetable for
each phase.
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genes, however, can be cloned directly from spleen cells using rapid
and direct recombinant DNA methods. The time from isolation of
spleen cells to established antibody-producing clones is reduced
many-fold.
• They do not require animals or large-scale cell culture for their
production. Phage circumvent the need for ascites production or
large-scale cell culture. By generating a large natural display library
from V gene repertoires, it is even possible to completely bypass both
immunization and hybridoma development and isolate antibodies
with high affinity against any antigen (3). This is particularly
appealing in the area of human antibody development.
• They offer a stable genetic source. Some hybridomas are genetically
unstable and will lose or stop expressing antibody genes. Phage
antibody technology can be used to clone and rescue monoclonal
antibodies from unstable hybridomas (4).
• They can be genetically manipulated. Phage antibody genes can be
easily sequenced, mutated and screened to improve antigen binding.
It is evenpossible to rearrange the genes which code for the various
regions of an antibody molecule such that its specificity and affinity
for an antigen are altered (3).
* Purification using mouse monoclonal Anti-E tag as a ligand coupled
to Sepharose High performance offers a very specific purified
method.
Soluble recombinant antibodies add the following additional
advantages:
• They can be produced quickly and economically.
• They are useful as immunological reagents.
The power of recombinant phage antibodies, coupled with the ease
and versatility of recombinant DNA methodology, offer an improved
route for the production of highly specific reagents for research,
immunotherapeutic and diagnostic applications.
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Immune response
Antigens are substances that induce an immune response in an animal.
In general, they are polyvalent structures with numerous antigenic sites
or epitopes, which are recognized by cells that participate in the
immune response. B lymphocytes, which are located in the blood
(peripheral B lymphocytes), lymph nodes, spleen and several other
organs of the body, produce antibodies that specifically recognize and
interact with the antigen. These antibody molecules are encoded by
immunoglobulin genes in the B lymphocyte genome. When an animal is
challenged with a polyvalent antigen, a population of antibody-
producing B lymphocytes is stimulated. Each cell within the population
produces an antibody that recognizes a single epitope on the antigen.
The response is polyclonal since the collective population of antibodies
that develop will bind many different sites on the antigen. A single B
cell from this polyclonal population can be immortalized either by
mutation, fusion with myeloma cell lines (e.g. SP2/0-Ag14), or
transformation with Epstein Barr virus. The resulting clone secretes an
epitope-specific, or monoclonal antibody. Kohler and Milstein (5)
originally described the cell fusion and selection process for monoclonal
antibody production which is in widespread use today.
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Fv
Paratope CDR Heavy
;;;;;;;;;;;;;;;
NH2 Heavy Chain
;;;;;;; ;
Primers
;;;;;;;;;;;;;
;;;;;;;;;;;;;;;
;;;;;;;;;
;;;;;;; ;
;;;;;
;;
Light Chain
;;;
;;;;;
;;;;;
;;
COOH Light
Primers
CH
Idiotype
Fw
-SS
-SS
ScFv
-
-SS- CL Linker
;;;;;;;;;;;;;;;;
;;;;;;;;;;;
Isotype -SS- Heavy
Chain 5'
;;;;
; ; ;;
3' Light
Chain
Fd F(ab')2 Fab
;;;;;;;;;;
;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;
;;;;;;;;;;;
;;;;;;;;;;;
;;;;;
;;;;;;;;;;;
;;;;;;;;
;;;; ;
;;;;;;
;;;
; ; ;;
;;
;;
;
-
-SS
-SS
-SS
-
-SS-
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Antibody structure
Successful cloning of antibody genes requires some basic understanding
of antibody structure and function (6, 7). All antibodies have a
common structure (Figure 1, page 9) consisting of two identical heavy
(H) chain polypeptides (55–70 kd/440 amino acids) and two identical
light (L) chain polypeptides (24 kd/220 amino acids) held together by
disulphide bridges and non-covalent bonds. The four chains contain
defined Variable (V), Diversity (D) (heavy chain only), Joining (J) and
Constant (C) regions. The DNA and amino acid sequence of the C
region is relatively conserved within a given animal species while the V
region sequence is antigen-dependent. Pairing of the heavy and light
chain V regions creates an antigen-binding site (paratope) which
recognizes a single antigenic determinant (epitope). Most protein
antigens contain many potential epitopes which are recognized by a
correspondingly large number of specific antibodies that comprise a
polyclonal antibody population.
Constant region
The C region is located at the carboxy-terminus of an antibody chain.
In the mouse, there are five classes of constant heavy (CH) chain genes
(α, δ, ε, γ and µ) and two classes of constant light (CL) chain genes (κ
and λ). DNA and amino acid sequences are relatively conserved within
each class. Antibodies are grouped into five major classes according to
their CH region: IgA, IgD, IgE, IgG and IgM. An antibody is further
distinguished by the class of light chain
(κ or λ) paired with its heavy chain. The class of each chain can be
identified immunologically or isotyped with commercially available
reagents which are animal-species-specific.
Variable region
The V region is located at the amino-terminus of the antibody chain. It
consists of alternating framework (FW) and hypervariable, or
complementarity-determining regions (CDRs). The greatest sequence
diversity occurs in the CDRs, while the FW region sequences are more
conserved. The J region (heavy and light chains) and the D region
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(heavy chain only) lie immediately upstream from the C region. The
CDRs, and to some extent the FW regions, interact with the antigen to
form the core of an antigen-binding site. Sequence variations within the
J and D regions further influence the conformation of the site. The
cumulative effect of the variations in these regions determines the
antigenic affinity and specificity of an antibody, as well as its idiotype.
Because the DNA sequences within the first FW and the carboxy-
terminal portion of the J region are relatively conserved for all classes
of antibodies in a given animal, cloning becomes a feasible task.
Amplification schemes for antibody V genes can thus be devised using
a collection of primers that hybridize to these conserved sequences.
Since the Recombinant Phage Antibody System uses primers that
anneal to these conserved sequences, all classes of antibodies from
mouse can be amplified and cloned.
Antibody molecules also contain discrete protein domains or fragments
that can be isolated by protease digestion or produced by recombinant
techniques. Two functional antigen-binding fragments, designated Fab
and Fv, have been cloned and displayed on phage. The larger Fab
fragment (fragment antibody) contains the VL-CL and VH-CH segments
linked by disulphide bonds. The smaller Fv (fragment variable) is
composed of the VL and VH regions only. In a recombinant version of
the Fv fragment, designated the single-chain Fv fragment, or ScFv
(8-11), the two variable regions are artificially joined with a neutral
linker and expressed as a single polypeptide chain. This enables the VH
and VL regions to associate intramolecularly and stabilizes variable
domain combinations that interact weakly. Most VH-Linker-VL ScFv
proteins contain a single 15-amino acid linker (Gly4Ser)3. This flexible
peptide linker is specifically designed to bridge the 3.5 nm gap between
the carboxy-terminus of the VH chain and the amino-terminus of the
VL chain (8, 9). This construction facilitates chain pairing and
minimizes refolding and aggregation problems encountered when the
two chains are expressed individually. The affinity and stability of ScFv
antibodies containing the (Gly4Ser)3 residues are generally comparable
to those of the native antibody (8, 9, 12).
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H
Time
(hr)
Modules
L
-SS-
-SS-
-SS-
Cum.
Step
-SS-
Hybridoma/B cell
AAAA
Light chain mRNA
AAAA
Heavy chain mRNA
Day 1
1 1 mRNA Purification QuickPrep™ mRNA
Purification Kit
AAAA AAAA
Heavy chain (H) mRNA + Light chain (L) mRNA
AAAA AAAA
TTTT TTTT
cDNA cDNA
AmpliTaq® + dNTPs
30 cycles
(Continued on page
(continued on page 21) 19)
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Amplification 1 (cont.)
Cum.
Step
Mouse ScFv Module (cont.)
VH VL
n n
Day 2
1 1 Gel Analysis
VH VL
300 bp —
1 2 Band Isolation
VH VL
n n
1 3 Gel Quantitation
VH VL
300 bp —
AmpliTaq® + dNTPs
7 cycles
VH Linker VL
(Continued
(continued onon page
page 22)20)
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Cum.
Primers
AmpliTaq® + dNTPs
30 cycles
800 bp —
4 5 Sfi I Digest
+
Sfi I VH Linker VL Not I
4 9 Not I Digest
+ +
Sfi I VH Linker VL Not I
Day 4
0.5 0.5 Spun-Column Purification
Expression Module
(Continued
(continued onon page
page 23)21)
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mRNA purification
mRNA is isolated from hybridoma or spleen cells. The success of
antibody cloning depends on the purity of the mRNA. QuickPrep™
mRNA Purification Kit is highly recommended for hybridomas since it
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Primary PCR
The heavy and light chain antibody genes are amplified in two separate
reactions. Two sets of primers, one set for each chain, are used in
separate amplification reactions. The primers are designed to hybridize
to opposite ends of the variable region of each chain. The heavy chain
amplification reaction yields a fragment approximately 340 base pairs
in length, while the corresponding light chain product is slightly
shorter, approximately 325 base pairs in length. The Recombinant
Phage Antibody System allows the cloning of a majority of the V region
gene families. Since lambda light chains represent only 5% of the
mouse light chain population, the sequence information available is
insufficient to allow consensus lambda-specific primers to be designed.
Therefore, lambda primers are not included with the kit, and lambda
light chain genes may not be amplified. If problems are encountered at
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Gel purification
The amplified heavy and light chain fragments are purified separately
by agarose gel electrophoresis to remove primers and extraneous
amplification products. The Ethidium Bromide-stained, amplified DNA
bands are cut from the gel, extracted from the agarose plug and
purified. Purification of the DNA from an Agarose gel can be done
quickly and easily using the empty MicroSpin™ columns provided.
Alternatively, commercially available purification systems such as
Sephaglas™ BandPrep Kit (27-9285-01) may be used.
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Spun-column purification
The assembled antibody ScFv gene is purified on a spun column to
remove unincorporated linker primers and dNTPs. The components of
the polymerization reaction may interfere with subsequent steps if the
assembled ScFv DNA is not purified. In addition, the buffer is
exchanged in this step in preparation for the restriction digests.
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References
1. McCafferty, J. et al., Nature 348, 552 (1990).
2. Winter, G. and Milstein, C., Nature 349, 293 (1991).
3. Marks, J. D. et al., J. Mol. Biol. 222, 581 (1991).
4. Carson, D. A. and Freimark, B. D., Adv. Immun. 38, 275 (1986).
5. Kohler, G. and Milstein, C., Nature 256, 495 (1975).
6. Roitt, I., Essential Immunology, Blackwell Scientific Publications,
London, seventh edition (1991).
7. Harlow, E. and Lane, D., Antibodies: A laboratory manual, Cold
Spring Harbor Laboratory, first edition (1988).
8. Huston, J. S. et al., Proc. Natl. Acad. Sci. USA 85, 5879 (1988).
9. Whitlow, M. and Filpula, D., Methods: A Companion to Methods
in Enzymol. 2, 97 (1991).
10. Batra, J. K. et al., J. Biol. Chem. 265, 15198 (1990).
11. Glockshuber, R. et al., Biochemistry 29, 1362 (1990).
12. Takkinen, K. et al., Protein Engineering 4, 837 (1991).
13. Rasched, I. and Oberer, E., Microbiol. Rev. 50, 401 (1986).
14. Messing, J., Gene 100, 3 (1991).
15. Vieira, J. and Messing, J., Methods in Enzymol. 153, 3 (1987).
16. Hoogenboom, H. R. et al., Nucl. Acids Res. 19, 4133 (1991).
17. Marks, J. D. et al., Bio/Technology 10, 779 (1992).
General Molecular Biology References
Sambrook, J., Fritsch, E. F. and Maniatis, T., Molecular Cloning: A
Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring
Harbor, second edition (1989).
Ausubel, F. M. et al., Current Protocols in Molecular Biology, Current
Protocols (1994).
Other General References
Innis, M. A. et al., PCR Protocols: A Guide to Methods and
Applications, Academic Press, Inc. (1990).
Borrebaeck, Carl A. K., Antibody Engineering: A Practical Guide,
W. H. Freeman Company (1992).
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Related products
Recombinant Phage Selection Module
1 kit 27-9403-01
RPAS Purification Module
1 kit 17-1362-01
Anti-E Tag Antibody
1 mg 27-9412-01
Anti-M13 Antibody
1 mg 27-9410-01
Light Primer Mix
10 µl 27-1583-01
Heavy Primers
10 µl each 27-1586-01
Linker Primer Mix
100 µl 27-1588-01
RS Primer Mix
100 µl 27-1589-01
pCANTAB 5 Gene Rescue Primers
1 nmol each 27-1581-01
pCANTAB 5 Sequencing Primer Set
250 pmol each 27-1585-01
QuickPrep mRNA Purification Kit
4 purifications 27-9254-01
RNA Extraction Kit
1 kit 27-9270-01
mRNA Purification Kit
2 purifications 27-9258-01
4 purifications 27-9258-02
Not I
200 units 27-0976-01
1000 units 27-0976-02
Sfi I
200 units 27-0975-01
1000 units 27-0975-02
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27-9400 overview rev A 21/6/01 9:36 am Page 37
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