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Molecular Systematic Revision of Tree Bats (Lasiurini) - Doubling The Native Mammals of The Hawaiian Islands
Molecular Systematic Revision of Tree Bats (Lasiurini) - Doubling The Native Mammals of The Hawaiian Islands
DOI:10.1093/jmammal/gyv135
Published online September 24, 2015
This study reports the phylogenetic relationships of 13 species of lasiurine bats using 4 loci from mitochondrial
and Y-chromosomal DNA. Our results support a sister taxon relationship between the red and hoary bats, with
the yellow bats being more distantly related. Several taxonomic revisions are suggested based on the results of
this study. We support the recognition of 3 separate genera: Lasiurus (red bats), Dasypterus (yellow bats), and
Aeorestes (hoary bats, including A. egregius which groups more closely to the hoary bats than its traditional
placement with the red bats). We recognize L. frantzii as a distinct species and recognize L. blossevillii salinae as
a subspecies rather than species. We elevate 3 previously recognized subspecies of A. cinereus to specific status.
The phylogeography of the endangered Hawaiian hoary bat is studied in detail, and hoary bats are found to have
undergone multiple invasions of the Hawaiian Islands from North America over its evolutionary history. We also
report the presence of 2 species of Aeorestes on the Hawaiian Islands where only one previously had been known.
En este estudio reportamos las relaciones filogenéticas de 13 especies de Lasiurini, utilizando cuatro loci del ADN
mitocondrial y del cromosoma Y. Los resultados apoyan una relación filial cercana entre los murciélagos canosos
y los murciélagos rojos, con los murciélagos amarillos un tanto más distantes. Los resultados también sugieren
varias revisiones taxonómicas. Nosotros reconocemos tres géneros diferentes como sigue: Lasiurus (murciélagos
rojos), Dasypterus (murciélagos amarillos), y Aeorestes (murciélagos canosos o cenizos). Reconocemos a
L. frantzii como especie diferente, y a L. blossevillii salinae a nivel subespecífico en vez de específico. También
elevamos a nivel específico las tres subespecies de A. cinereus previamente reconocidas. Hemos estudiado en
detalle la filogeografía del los murciélagos canosos de Hawaii en peligro de extinción, y encontramos que durante
su historia evolutiva los murciélagos canosos habian invadido las islas hawaianas en múltiples ocasiones desde
Norte América. También en este estudio reconocemos las presencia de dos especies de Aeorestes en las islas
hawaianas, las cuales anteriormente se había reportado como solo una.
Key words: Aeorestes, Dasypterus, Hawaiian hoary bat, Lasiurus, molecular phylogenetics, tree bats
The tribe Lasiurini, currently comprised of a single genus, to possibly warrant their own subfamily. The monophyly and
Lasiurus, is a diverse assemblage of vespertilionid bats distrib- distinction of Lasiurini was confirmed by Hoofer and Van Den
uted in mainland North and South America and the Caribbean, Bussche (2003) in their study of vespertilionid molecular phy-
Hawaiian, and Galapagos Islands. These bats possess many logenetics based on mtDNA and by Roehrs et al. (2010) in their
unique morphological characters in comparison to other ves- study of vespertilionine phylogenetics based on mtDNA and
pertilionids and were therefore placed in their own tribe by nuclear DNA. Despite the consistent findings of monophyly,
Tate (1942), who considered them to be sufficiently distinct as historically the taxonomy of Lasiurus has undergone significant
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changes and many aspects still are debated. For the purposes of red, and hoary bats. Mitochondrial and nuclear DNA sequences
this study, we follow Wilson and Reeder (2005), who consider confirmed the monophyly of the genus, as well as each species
the genus to contain 17 species, 4 of which are divided into group (Hoofer and Van Den Bussche 2003; Roehrs et al. 2010).
multiple subspecies. Lasiurus is considered by some authors Like the aforementioned allozyme studies, Hoofer and Van Den
(including Wilson and Reeder [2005]) to be divided into 2 sub- Bussche (2003) found an essentially unresolved trichotomy
genera (previously defined by Tate [1942] as distinct genera): among the 3 morphologically distinctive groups using mtDNA.
Lasiurus for the red and hoary bats and Dasypterus for the yel- The authors note that because of the unresolved relationships
low bats. This classification has been disputed by some authors among the 3 species groups, their data could neither support nor
(e.g., Handley 1960; Baker et al. 1988). Baker et al. (1988) refute the validity of Dasypterus sensu Tate (1942). Similarly,
rejected the subgeneric classification because the patterns of using a combination of mtDNA and nuclear sequences, Roehrs
genetic divergence they found were inconsistent with such et al. (2010) could not resolve the placement of the yellow bats
a classification. They noted that there are 3 distinct lineages relative to the red and hoary bat.
within the genus: the red, yellow, and hoary bats. They pro- Some relationships within Lasiurus have been resolved
The morphology and behavior of the Hawaiian hoary bats likelihood analysis using GARLI version 0.96 (Zwickl 2006)
have been studied. They exhibit a significant reduction in body and a Bayesian analysis using MrBayes version 3.1.2 (Ronquist
size (Jacobs 1996—although we note that this author only used and Huelsenbeck 2003). Each Bayesian analysis was per-
specimens from the Island of Hawaii), have a generalized diet formed using 5 million generations with a sample frequency of
(Whitaker and Tomich 1983), and some individuals roost in 1,000 generations. The program Tracer version 1.5 (Rambaut
caves (Fujioka and Gon 1988), whereas all mainland L. cinereus and Drummond 2009) was used to determine that the burn-in
are known to be obligate tree roosters. It currently is unknown selected (25%) was appropriate and that convergence had been
when L. c. semotus arrived in Hawaii and began to differentiate reached. Posterior probabilities were obtained by MrBayes and
from mainland subspecies. These morphological and behav- 100 bootstrap replicates were performed on the maximum like-
ioral differences from other L. cinereus make establishing an lihood data with GARLI. Trees were visualized using FigTree
accurate taxonomic and phylogeographic history of this sub- version 1.4.0 (Rambaut 2012).
species important for conservation purposes due to its listing as Additionally, we used a species tree approach implemented
endangered under the United States Endangered Species Act, in *BEAST version 1.7.5 (Drummond et al. 2012) to examine
Table 1.—List of primers used in this study. Last column indicates whether the primer was used in a PCR reaction, sequencing reaction, or both.
examining interspecies relationships. The clock model selected analysis was repeated a 2nd time to ensure maximum conver-
was the lognormal relaxed clock. We used a concatenation of gence. TreeAnnotator version 1.7.5 (Drummond et al. 2012) was
the 3 mitochondrial gene sequences described above. Y chromo- used to summarize the BEAST results and generate the final tree.
some sequences were not included in this analysis because of Taxonomic revisions.—To determine whether any taxonomic
the lack of data from 2 key taxa: L. cinereus from Hawaii and revisions needed to be applied to our study group, we gathered
L. salinae from Argentina. Because a major goal of the dating data from both molecular and morphological sources. We first
analysis was to determine the time to colonization of Hawaii, we compared molecular divergences recovered here to other molec-
chose to exclude the Y chromosome data from the analysis due ular studies on mammals, and particularly studies on vesper-
to concerns over missing data (see above), rather than to exclude tilionid bats. We compared levels of molecular differentiation
the Hawaiian Lasiurus from an analysis of all loci. Models of at the intraspecific, interspecific, intrageneric, and intergeneric
evolution for each partition were specified independently. The levels of our taxa to those recovered in other mammalian stud-
BEAST analysis was run for 100 million generations and the ies. We also examined our data for consistent findings of recip-
software Tracer version 1.5 (Rambaut and Drummond 2009) rocal monophyly across the above levels of taxonomy for the
was used to determine that convergence had been reached. This genetic markers we examined. If, based on the above steps, we
BAIRD ET AL.—MOLECULAR SYSTEMATICS OF TREE BATS 1259
determined that a possible taxonomic change was warranted, dataset of all mtDNA loci used in the divergence time analysis
we went back to the morphological literature on Lasiurus to (Fig. 5) and the combined data from all loci in the species tree
determine whether there were also morphological justifications analysis (Fig. 6) strongly supports the red and hoary bats as being
for our hypothesized changes. sister taxa. Furthermore, it is clear that the red, hoary, and yellow
bats each represent well-supported monophyletic groups with
the exception of one traditionally recognized red bat species,
Results L. egregius, which groups with the hoary bats.
The data we obtained were able to resolve 3 major lineages that Red bats.—Red bats form a monophyletic group, with the
correspond to the red, yellow, and hoary bats. Three of the 4 loci exception of L. egregius, which groups sister to the traditionally
we examined (ND1, Cytb, and DBY) group the red and hoary recognized hoary bat clade. The red bats are the sister group to
bats as sister taxa, separate from the yellow bats (Figs. 1, 2, and the hoary bats plus L. egregius. Each currently recognized spe-
4). The remaining locus, ND2, shows weak support for the hoary cies included in our analysis formed a well-supported mono-
and yellow bats as sister taxa (Fig. 3). However, the combined phyletic group, with the exception of L. salinae from Argentina,
Fig. 1.—Maximum likelihood tree for the ND1 locus. Support values are given as bootstrap proportions/Bayesian posterior probabilities. They
are coded as follows: + indicates a bootstrap value > 80 or pp >0.95; − indicates bootstrap value from 51 to 79 or pp between 51 and 94; * indi-
cates bootstrap or pp < 50. Note that in the maximum likelihood tree shown, there is no support for a monophyletic South American L. cinereus.
However, with 100 bootstrap replicates and Bayesian analysis, the monophyletic relationship is supported at 53/0.89. HI = Hawaii; NA = North
America; pp = posterior probability; SA = South America.
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Fig. 3.—Maximum likelihood tree for the ND2 locus. Support values are given as bootstrap proportions/Bayesian posterior probabilities. They are
coded as follows: + indicates a bootstrap value > 80 or pp > 0.95; − indicates bootstrap value from 51 to 79 or pp between 51 and 94; * indicates
bootstrap or pp < 50. HI = Hawaii; NA = North America; pp = posterior probability; SA = South America.
which appears to be a member of the L. blossevillii lineage. The the red bats are not resolved, we can conclude that the South
North American (L. borealis and L. seminolus) and Cuban (L. American red bat species examined are not monophyletic.
pfeifferi) species are supported as being a monophyletic group. L. atratus is quite distinct from the remaining red bats and does
Although some aspects of the phylogenetic structure within not group with the other South American species.
BAIRD ET AL.—MOLECULAR SYSTEMATICS OF TREE BATS 1261
The Mexican and Central American subspecies of L. blos- from North America is quite distant (17–19% k2p dis-
sevillii (L. b. teliotis/frantzii) are genetically quite divergent tance at Cytb) and is the most basal lineage of yellow bats.
from the remaining L. blossevillii from South America at all L. insularis and L. intermedius are sister taxa with about
of the mitochondrial loci (average of about 14% k2p dis- 13% divergence between them. This level of divergence
tance at Cytb; Figs. 1–3); however, L. blossevillii from South indicates that L. insularis is indeed a valid species, which
America is indistinguishable based on the Y chromosome has been debated by several authors in the past (e.g., Hall
DBY sequence (Fig. 4). The relationship of the Galapagos and Jones 1961; Silva-Taboada 1976). Within L. ega, the
subspecies L. b. brachyotis from other L. blossevillii was not South American specimens form a clade that is sister to
evaluated due to the lack of sample material. Clustered well the remaining North and Central American specimens. The
within the L. blossevillii clade in the ND1 tree (Fig. 1) was North and South American L. ega differ from each other by
the single sample of L. salinae, a species whose existence has about 9% k2p distance at Cytb. One interesting observation
been unclear for 100 years (see Mares et al. 1995; Barquez is that for ND1, L. ega is not monophyletic (Fig. 1), but for
et al. 1999). The average divergence between L. salinae and the remaining loci examined, it is supported as being mono-
L. blossevillii at the ND1 locus is about 2%, whereas the phyletic (Figs. 2–4).
average divergence within L. blossevillii is higher, at 2.6%. Hoary bats.—We find 3 distinct mtDNA clades of L. cinereus
The position of L. varius varies between loci examined. With (Figs. 1–3; see Fig. 1 legend for explanation of depiction of
ND2 and DBY it is supported as being at the base of the red non-monophyly at that locus) that we interpret to represent the
bat clade, whereas with Cytb it is sister to L. blossevillii, and 3 subspecies recognized by Wilson and Reeder (2005). Our 2
with ND1 its position is not statistically supported, though it is samples of South American L. cinereus are from the geographic
clearly a member of the red bat clade. In the combined mtDNA range of L. c. villosissimus recognized by Gardner and Handley
analysis performed using BEAST, with a single specimen of (2007). The South American subspecies (L. c. villosissimus) is
each species, the analysis supported L. varius at a basal posi- the sister group to the other subspecies and is a monophyletic
tion relative to the remaining red bats (Fig. 5), and this basal clade in Fig. 3. L. cinereus from Hawaii are found in 2 dis-
relationship was also recovered with the *BEAST species tree tinct clades on the phylogeny: one consisting of only Hawaiian
using all 4 loci (Fig. 6). L. c. semotus from Maui and the Big Island of Hawaii, whereas
Yellow bats.—The 4 recognized species of yellow bats are other individuals from Maui group within a clade that includes
all genetically differentiated from one another. L. xanthinus all North American specimens (L. c. cinereus). We consider
1262 JOURNAL OF MAMMALOGY
Fig. 6.—Species tree analysis. Results are based on sequence data from all 4 loci using the species tree approach implemented in *BEAST.
Numbers at nodes represent Bayesian posterior probabilities. HI = Hawaii; NA = North America; SA = South America.
the uniquely Hawaiian clade to represent L. c. semotus and the Between the South American subspecies and both the Hawaiian
clade that includes both Hawaiian and North American speci- (L. c. semotus) and North American (L. c. cinereus) subspecies,
mens to represent L. c. cinereus. there is greater than 11% k2p sequence divergence at Cytb,
There are variable degrees of sequence divergence within and while the Hawaiian and North American subspecies diverge
among subspecies of L. cinereus. Within the South American about 4% k2p at Cytb.
subspecies (L. c. villosissimus), there is about 4% (k2p) Species tree and divergence times.—Results from the BEAST
sequence divergence at ND1 (multiple South American speci- divergence time analysis are shown in Fig. 5. These data indi-
mens were not sequenced for Cytb); within the North American cate that the split between Myotis and Lasiurus occurred about
subspecies (L. c. cinereus), there is only 0–1% k2p divergence 33 Ma (22.1–44.7 Ma, 95% highest posterior density), the split
at Cytb. Within the L. c. semotus clade, there is < 1% divergence. between the yellow bats and the rest of Lasiurus occurred about
BAIRD ET AL.—MOLECULAR SYSTEMATICS OF TREE BATS 1263
18.5 Ma (12.2–26.5 Ma), and the split between the red and show the pattern we observe here (Boissinot and Boursot 1997;
hoary bats occurred about 14 Ma (9.1–20.8 Ma; Fig. 5). These Albrechtova et al. 2012). Increased maternal penetration of a
results are consistent with the fossil record of Lasiurus. The species boundary is somewhat more expected due to Haldane’s
earliest fossils known from Lasiurus date to the late Miocene, Rule, so the pattern exhibited in Lasiurus and house mice
circa 9 Ma (Czaplewski et al. 1999). Still other fossils of this appears to be unusual. As demonstrated by Albrechtova et al.
genus are known from the Pliocene in Florida (Morgan 1991). (2012), there may be greater selection on a particular sperm
The fossil record for extant Lasiurus is sparse, but most species phenotype in Lasiurus that has allowed it to cross the species
have fossil records extending into the Pleistocene (Shump and barrier and exhibit patterns associated with a selective sweep.
Shump 1982; Kurta and Lehr 1995). An alternative explanation could be that the DBY locus is sim-
Results from the species tree analysis in *BEAST are shown ply more slowly evolving than the mtDNA loci examined. This
in Fig. 6. The phylogeny is more weakly supported than the alternative does not appear to be likely, given that other lineages
mtDNA concatenated analysis shown in Fig. 5; however, the 2 of Lasiurus that diverged much more recently than the North
trees are not significantly different from each other. They only and South American L. blossevillii (such as L. pfeifferi/L. sem-
observed, that the North and South American lineages of L. ega American clade. Our results, with additional informative sites
that we sampled are most likely distinct species. However, provided by sequencing, found that the individual that they
without a more complete sampling of the subspecies within studied grouped in the separate L. c. semotus clade.
L. ega, we cannot recommend taxonomic changes. A more We also found evidence to indicate multiple invasions of the
detailed study of L. ega should be conducted to address the sta- Hawaiian Islands from North America at very different times.
tus of these populations. The older invasion, represented by the presumptive Lasiurus
We note that the pattern shown by L. ega of high levels of c. semotus clade, and present on both Maui and the Big Island
divergence between North and South American lineages is (Fig. 2), occurred about 1 Ma (0.4–1.8 Ma; Fig. 5). The obser-
repeated in other currently recognized species of Lasiurus, vation of 2 distinct North American L. c. cinereus haplotypes
including L. cinereus and L. blossevillii, and all occur during a (Fig. 2) on Maui indicates at least 1 and possibly as many as 2
relatively short (about 1.5 My) time period. The split between more recent invasions. Remarkably, this observation confirms
North and South American lineages of these species date to a recent study modeling the possibility of the colonization of
about 2.63 Ma (1.2–4.5 Ma; L. ega), 3.41 Ma (1.7–5.7 Ma; Hawaii from North America by L. cinereus that concluded
name Dasypterus is ascribed to the yellow bats. This arrange- Lasiurus Gray, 1831: 38; type species Vespertilio borealis
ment agrees with previous taxonomic classifications based (Müller, 1776), by subsequent designation (Miller and Rehn
on morphology (Tate 1942). This arrangement also reflects 1902: 261).
the widely accepted colloquial groupings of these bats (based Nyc[ticea]. LeConte, 1831: 432; part; incorrect subsequent
mainly on morphological divisions). Most scientists already spelling of Nycticeius Rafinesque, 1819.
refer to “red bats,” “yellow bats,” and “hoary bats” when refer- Nycticeius: Poeppig, 1835: 451; footnote; part; not Nycticeius
ring to these groups. Therefore, we feel it is appropriate to have Rafinesque, 1819.
the taxonomy reflect these already used groupings because Scotophilus: Gray, 1838: 498; part; not Scotophilus Leach,
molecular and morphological data support their delineation. 1821.
We raise L. blossevillii frantzii (including specimens of the Atalapha: Gervais, 1854: 114; part; not Atalapha Rafinesque,
formerly recognized L. b. teliotis) to a species separate from 1814.
L. blossevillii: L. frantzii. This would place the mostly North Remarks: We include the following species in this genus:
American forms into a single species (although we note that L. atratus, L. blossevillii, L. borealis, L. castaneus, L. degeli-
Lasiurus bonariensis: Fitzinger, 1870: 408; name Lasiurus borealis frantzii: Goldman, 1932: 148; name
combination. combination.
Atalapha Frantzii: Hensel, 1872: 25; not Atalapha frantzii Nycteris borealis frantzii: Hall, 1981: 223; name combination.
Peters, 1870. Lasiurus blossevillii frantzii: Baker, Patton, Genoways, and
Atalapha (Atalapha) noveboracensis: Dobson, 1878: 269; Bickham, 1988; name combination.
part; not Vespertilio noveboracensis Erxleben, 1777. L. f. teliotis (H. Allen, 1891)
[Nycticejus (]Atalapha[)] bonaërensis Burmeister, 1879: 93; Synonyms:
unjustified emendation of V. bonariensis Lesson. Atalapha teliotis H. Allen, 1891: 5; type locality unknown,
Atalapha borealis frantzii: Thomas, 1898: 2; name combina- “but probably Southern California.”
tion; not Atalapha frantzii Peters, 1870. Lasiurus borealis teliotis: Miller, 1897: 110; name
Lasiurus borealis bonariensis: Thomas, 1901b: 435; name combination.
combination. [Lasiurus (Lasiurus) borealis] teliotis: Trouessart, 1904: 87;
Vespertilio aurantius Miranda-Ribeiro, 1903: 179; name combination.
Aeorestes villosissimus (Geoffroy St.-Hilaire, 1806) Dasypterus villosissimus: J. A. Allen, 1905: 191, footnote;
South American hoary bat name combination.
Synonyms: see under subspecies. Nycteris cinerea villosissima: Thomas, 1910: 240; name
Subspecies: combination.
A. v. brasiliensis (Pira, 1904) Remarks: The only subspecies we examined in this study was
Synonyms: A. v. villosissimus. Therefore, the placement of the remaining
Atalapha cinerea brasiliensis Pira, 1904: 12; type locality subspecies should be examined further. Based on our analy-
“Ignape,” [=Iguape] São Paulo, Brazil. ses, we took the most conservative approach by considering
Lasiurus cinereus: Lima, 1926: 111; name combination. them subspecies of A. villosissimus because they are all from
Lasiurus cinereus grayi: Vieira, 1942: 416; part. South America. Previous authors (e.g., Shump and Shump
Lasiurus cinereus villosissimus: Cabrera, 1958: 114; part. 1982) considered all South American forms as synonyms of
L[asiurus]. c[inereus]. brasiliensis: Gardner and Handley, L. c. villosissimus, prior to their being elevated to subspecific
2007; name combination. status by Gardner and Handley (2007).
Lasiurus Aga Tomes, 1857: 43; incorrect subsequent spelling Lasiurus ega panamensis: Handley, 1960: 474; name
of D. ega Gervais. combination.
Atalapha (Dasypterus) Ega: W. Peters, 1870: 914; name Nycteris ega panamensis: Hall, 1981: 221; name combination.
combination.
Dasypterus ega [ega] O. Thomas, 1901a: 247; part; name Dasypterus insularis (Hall and Jones, 1961)
combination. Synonyms:
[Lasiurus (Dasypterus)] ega: Trouessart, 1904: 86; part; Lasiurus intermedius insularis Hall and Jones, 1961: 85; type
name combination. locality “Cienfuegos, Las Villa Province,” Cuba.
Lasiurus ega ega: Handley, 1960: 474; name combination. Lasiurus insularis Silva-Taboada, 1976.
D. e. argentinus Thomas, 1901 Nycteris intermedia insularis: Hall, 1981: 220; name
Synonyms: combination.
Dasypterus ega argentinus O. Thomas, 1901a: 247; type
locality “Goya, Corrientes, Argentina.” Dasypterus intermedius (H. Allen, 1862)
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Appendix I
List of samples used. General localities are given. GenBank accession numbers for each locus are provided. Empty cells indicate that a
particular sample was not sequenced for that locus.
Appendix I. Continued
Genus Species Tissue voucher Locality ND1 Cytb ND2 DBY
Lasiurus cinereus NK8096 Baja Cal KT149060 KP341736 KT149113 KT149135
Lasiurus cinereus NK9191 New Mexico KP341737
Lasiurus cinereus NK9250 Sonora KT149061 KP341738 KT149107
Lasiurus cinereus NK9273 Sonora KP341739
Lasiurus ega AK1635 Tamaulipas KT149038 KP341740 KT149094 KT149139
Lasiurus ega AK7636 Belize KT149039
Lasiurus ega AK7693 Belize KT149040 KP341741 KT149140
Lasiurus ega AK7697 Belize KT149042
Lasiurus ega AK7696 Belize KT149041
Lasiurus ega H4043 Tamaulipas KT149043
Lasiurus ega NK12302 Bolivia KT149044 KP341742 KT149142
Lasiurus ega NK15304 Bolivia KT149045 KP341743 KT149095 KT149143