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(Download PDF) Feature Engineering and Computational Intelligence in Ecg Monitoring Chengyu Liu Online Ebook All Chapter PDF
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Chengyu Liu · Jianqing Li Editors
Feature
Engineering and
Computational
Intelligence in
ECG Monitoring
Feature Engineering and Computational Intelligence
in ECG Monitoring
Chengyu Liu • Jianqing Li
Editors
Feature Engineering
and Computational
Intelligence in ECG
Monitoring
Editors
Chengyu Liu Jianqing Li
The State Key Laboratory School of Biomedical Engineering and
of Bioelectronics, School of Instrument Informatics
Science and Engineering Nanjing Medical University
Southeast University Nanjing, China
Nanjing, China
This Springer imprint is published by the registered company Springer Nature Singapore Pte Ltd.
The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore 189721,
Singapore
Preface
Clinical observation of heart activity from the body surface has become so common
that we now rarely stop to think about it. Advances made over the past 100 years
have been astonishing. What lies next? It would be all too easy to say that there is
little more that can be achieved. That is far from the case, and a well-informed review
of modern computational approaches should encourage new developments, with the
expectation that many will progress to become essential clinically useful techniques.
The book by Chengyu Liu and colleagues (Feature Engineering and Computational
Intelligence in ECG Monitoring) is just what is needed to encourage such new
research.
Electrocardiography started with the development of often cumbersome, complex
and costly equipment. As a result of much research and development, devices that
create the electrocardiogram (ECG) now appear in every hospital and in most family
doctor clinics and ambulances.
The most obvious results from body surface ECGs include the diagnosis of
cardiac conditions such as heart attacks and abnormal rhythms, the detection of
life-threatening atrial fibrillation, and the continuous monitoring of patients to detect
ventricular fibrillation with the ability to initiate life-saving defibrillation.
All such techniques are based on well-founded and obvious features of the ECG.
What is the role of more subtle features that undoubtedly relate to cardiac muscle and
conduction abnormalities and hidden cardiac conditions?
Readers and researchers can now be introduced to modern computational tech-
niques that use what we would generally consider “intelligence” and examine
features that even the trained eye would not see. Then in order to assist future
researchers, information is provided on where to find numerous relevant ECG
examples that can be used in initial research. No ECG is ever perfect, and in real
situations many ECGs are covered in noise that needs to be removed or its influence
avoided by further computational methods.
v
vi Preface
There are many practical areas where new computational techniques would be
invaluable, including the ability to record from multiple body sites while subjects
continue to pursue their normal activities. This is an important area for future
research, as many subjects have abnormal heart conditions that appear only during
specific patient situations or occur very infrequently.
Then finally, the review of applications for these new techniques is essential. It is
for the benefit of patients that there are many applications, and this list can only but
grow with the research techniques described.
Part I Introduction
Feature Engineering and Computational Intelligence
in ECG Monitoring: An Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Chengyu Liu and Jianqing Li
vii
viii Contents
ix
x About the Editors
C. Liu (*)
The State Key Laboratory of Bioelectronics, School of Instrument Science and Engineering,
Southeast University, Nanjing, China
e-mail: chengyu@seu.edu.cn
J. Li
The State Key Laboratory of Bioelectronics, School of Instrument Science and Engineering,
Southeast University, Nanjing, China
School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing,
China
2 Open-Source Advances
This book also aims to emphasize the spirit of open-source research, which is
characterized by participation, sharing, dedication, and ultimately converging into
a community, due to a group behavior, not an individual behavior. One of the
authors has participated in the organization of the PhysioNet Challenge with Pro-
fessor Gari Clifford while working in the United States. People who perform ECG
research know the PhysioNet databases. We need to thank Professor Roger G. Mark
and Dr. George B. Moody from MIT for their outstanding and leading work in open-
access databases. It was their pioneering contributions that allowed later researchers
to easily access a large number of clinical physiological data resources and data
analysis toolkits and then start their own research work. Since 2000, under the
initiative from Roger and George, PhysioNet and the Computing in Cardiology
(CinC) conference have jointly launched the annual Physionet/CinC Challenge,
which has become an important annual event in the field of physiological signal
analysis. After 2015, the organization baton of the Physionet/CinC Challenge was
delivered to Professor Gari D. Clifford, who has significantly enhanced the influence
Feature Engineering and Computational Intelligence in ECG Monitoring: An. . . 5
of the challenge worldwide. The author Chengyu Liu participated in the organization
of the two competitions in 2016 and 2017. We actively sought valuable competition
data from universities, research institutes, and enterprises and then did a lot of work
for data labeling and provided some basic signal processing algorithms as bench-
marks. The competition provided open-source, free, high-quality databases for
researchers worldwide and, more importantly, provided high-value data labeling,
benchmark algorithms, and communication platforms, which greatly promoted the
progress of open sources. After Chengyu returned to work in China in 2017, he has
initiated and organized the annual Chinese Physiological Signal Challenge (CPSC),
which promoted the progress of open sources in China.
From a broader perspective, we need to thank Mr. Linus B. Torvalds, who is the
father of Linux and an important initiator of the open-source concept; Mr. Dennis
M. Ritchie, who is the father of the C language and UNIX as the first modern
programming language; and also Mr. Guido van Rossum, who founded the Python
language, which greatly accelerated the progress of machine learning.
3 Progress So Far
Open source requires sharing and dedication, but before sharing and dedication, we
need to understand the use of existing resources and to participate in the process of
co-constructing the resources. In this sense, one of the purposes of this book is to
provide readers with the progress of current ECG research and then to share,
participate, and contribute under the spirit of open source. Specially, we prepared
Chap. 2 to introduce several open-source ECG databases from our group, two of
which became the challenge data for the CPSC2018 and CPSC2019. Along with the
competition, there are corresponding open-source codes for reference. We should
note that, although data and source code are important, they are not the whole and
essential spirit of open source. The value of data and source code can be significantly
improved with interactive discussions. The true spirit of open source is to form an
interactive community. Everyone can take the existing resources as a ladder and
eventually achieves further and better goals through participation, sharing, contri-
bution, and interaction.
4 Survey of Contents
increase the size of existing ones, as well as creating standard evaluation protocols,
have been made in several research areas, especially to avoid the potential unfair
comparisons between methods. The widely used MIT-BIH ECG database does not
perfectly fit the algorithm development for wearable ECG analysis. The team from
Southeast University has undertaken great work to address this issue and has
constructed several databases of wearable ECGs from both cardiovascular disease
and healthy subjects. “Representative Databases for Feature Engineering and Com-
putational Intelligence in ECG Processing” chapter reviews five open-access data-
bases and describes the specific composition of each database, by supplying both
recording and annotation information since adequate information seems to be the
most important element in feature engineering and computational intelligence in
ECG monitoring. These databases can be used for training ECG algorithms for
feature detection, arrhythmia classification, and signal quality assessment.
“An Overview of Signal Quality Indices on Dynamic ECG Signal Quality
Assessment” chapter: Signal quality assessment (SQA) is usually the first step for
dynamic ECG analysis, to choose the signal episode with good signal quality and
avoid false diagnosis due to artifact or noise. Feifei Liu et al. introduce methods for
developing signal quality indexes (SQIs) and for SQA of dynamic ECGs. SQIs were
developed from the morphology, time domain, frequency domain, and nonlinear
features of ECG signals. The special aspect for SQIs is the newly developed
generalized bSQI method, named as GbSQI. Typical machine learning methods
were used for developing the models for signal quality classification. This chapter
provides a simple review for the commonly used SQIs for quantifying the noise level
not only for dynamic ECGs but also for other physiological signals collected from
the dynamic environment.
“Signal Quality Features in Dynamic ECGs” chapter: Unlike the former chapter
focusing on the SQIs developed by multiple domain features based on the prior
knowledge of ECG, this chapter focuses on only self-correlation features. Herein,
Yixuan Li et al. present a special method combining both long and short template
matching mechanisms and propose a real-time SQA algorithm for wearable ECGs
based on multi-template matching and correlation coefficient matrix. The algorithm
was verified using the data from three types of signal quality classification.
“Motion Artefact Suppression Method for Wearable ECGs” chapter: Noise due to
the artifact and electrode motion is hard to totally eliminate because it overlaps in
both time and frequency domains with the real ECG components. Jianlong Zhao and
Huanqian Zhang present a review of motion artifact suppression methods in wear-
able ECGs. By analyzing the source of motion artifact from the view of the skin–
electrode interface and electrical model in wearable environments, motion artifact
suppression methods from both hardware design and adaptive filter algorithm were
developed. This chapter introduces the basic concepts of analog circuit model of skin
tissue, electrical circuit architecture, skin electrode impedance measurement of
singlechannels and multichannels, as well as the design for adaptive filters based
on least means square (LMS) to suppress the motion artifact.
“Data Augmentation for Deep Learning-Based ECG Analysis” chapter: Deep
learning has become “hot” technology in recent years owing to its admirable
Feature Engineering and Computational Intelligence in ECG Monitoring: An. . . 7
arrhythmia or noise from an ECG segment. Caiyun Ma et al. describe the detailed
physiological concepts used to develop AF detection algorithms and redefine several
AF features in dynamic ECG analysis. SVM was used to train the AF and non-AF
classifier, and the model was verified on the wearable ECG database.
“Applications of Heart Rate Variability in Sleep Apnea” chapter: According to
the World Health Organization survey, about one-third of the world’s population
suffers from sleep disorders, and the proportion has been increasing in recent years.
With the development of wearable ECG, sleep apnea-hypopnea syndrome (SAHS)
can be monitored and detected from single-channel ECGs. Heart rate variability
(HRV) is an important marker of autonomic nervous system (ANS) activity and can
be used for sleep apnea analysis. Xiaotong Dong et al. studied multisource HRV
features (time and frequency domain and nonlinear analysis) from SAHS patients
and found that the features have significant differences between normal sleep and
sleep apnea signals, indicating its usefulness as a preliminary screening tool for
detecting sleep apnea.
“False Alarm Rejection for ICU ECG Monitoring” chapter: High false alarm rates
have been reported in intensive care unit (ICU) monitors, which decrease quality of
care by slowing staff response times while increasing patient burden and stress. A
National Patient Safety Goals report in 2016 recognized reducing the hazards of
clinical alarm fatigue as an important consensus to improve patient safety. Dai Jian
et al. provide an overview on the variable reasons of alarm generation in ICU and
how to reduce false alarms for ECG monitoring. Clinical alarm management system
improvement and intelligent alarms are proposed in this chapter in order to reduce
and suppress the meaningless ECG alarm.
“Respiratory Signal Extraction from ECG Signal” chapter: Respiration is an
important factor to monitor diseases, and abnormal respiratory rate is recognized
as an indicator of catastrophic deterioration of diseases. In special situations, respi-
ratory rate is even more reliable for monitoring cardiac arrest than heart rate. In
practice, respiratory signal is usually derived from the ECG signal. Kejun Dong et al.
focus on the detection of ECG-derived respiration (EDR). This chapter reviews eight
ECG-derived respiration methods and verifies them using the synchronously col-
lected respiratory signals.
“Noninvasive Recording of Cardiac Autonomic Nervous Activity: What Is
Behind ECG?” chapter: The autonomic nervous system (ANS) innervates internal
organs unconsciously and controls the homeostasis of the human body. Studies show
that autonomic nerves are closely related to cardiovascular disease, and its regulation
of cardiovascular disease is multifaceted. Yike Zhang et al. overview the relationship
between the ANS and cardiovascular diseases, including the functions of ANS, ANS
in the cardiovascular system, and ANS dysfunction and related diseases. Then the
important features for quantifying the ANS function are introduced, including HRV
features, heart rate turbulence features, baroreflex sensitivity features, as well as skin
sympathetic nerve activity (SKNA) features. This last SKNA technique is highly
emphasized.
“A Questionnaire Study on Artificial Intelligence and Its Effects on Individual
Health and Wearable Device” chapter: Development of AI-related techniques has
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