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Climate Change and Non-infectious Fish Disorders
Climate Change and
Non-infectious Fish Disorders
Edited by
and
George K. Iwama
Quest University Canada, Squamish, British Columbia, Canada
CABI is a trading name of CAB International
CABI CABI
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Wallingford 8th Floor
Oxfordshire OX10 8DE Boston, MA 02111
UK USA
© CAB International 2020. All rights reserved. No part of this publication may be reproduced in any form
or by any means, electronically, mechanically, by photocopying, recording or otherwise, without the prior
permission of the copyright owners.
A catalogue record for this book is available from the British Library, London, UK.
Contributors vii
Preface ix
Patrick T.K. Woo and George K. Iwama
v
Contributors
Asbjørn Bergheim, IRIS-International Research Institute of Stavanger AS, PO Box 8046, N-4068 Stavanger,
Norway. E-mail: asbjorn@oxyvision.com
Clara Boglione,* Department of Biology, University of Rome ‘Tor Vergata’, Rome, Italy. E-mail: boglione@
uniroma2.it
Annette Bolton, Institute of Environmental Science and Research, Christchurch, New Zealand. E-mail:
annette.bolton@esr.cri.nz
Jacob W. Brownscombe, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada.
Current address: Department of Biology, Dalhousie University, 1355 Oxford Street, Halifax, Nova Scotia,
Canada B4H 4R2. E-mail: jakebrownscombe@gmail.com
Siew Chin Chua, Ridge View Residential College, National University of Singapore, Singapore. E-mail: siew-
chin@nus.edu.sg
Esther Clews, Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail: tmsec@
nus.edu.sg
John Colt, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and
Atmospheric Administration, 2725 Montlake Blvd, East Seattle, WA 98112, USA. E-mail: john.colt@noaa.gov
Steven J. Cooke, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. E-mail:
steven.cooke@carleton.ca
Chris K. Elvidge, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. Current
address: Department of Environmental and Biological Sciences, University of Eastern Finland, Joensuu,
Finland 80101. E-mail: chris.k.elvidge@gmail.com
Erin Faught, Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary,
Alberta T2N 1N4, Canada. E-mail: erinfaught@gmail.com
Sveinung Fivelstad,* Department of Safety, Chemistry and Biomedical Laboratory Sciences, Faculty of
Engineering and Science, Western Norway University of Applied Sciences, Inndalsveien 28, PO Box 7030,
N-5020 Bergen, Norway. E-mail: sveinung.fivelstad@hvl.no
Pedro M. Guerreiro, Centro de Ciências do Mar (CCMAR), University of Algarve, 8005-139 Faro, Portugal.
E-mail: pmgg@ualg.pt
Philip Harrison, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. Current
address: Department of Biology, University of Waterloo, Waterloo, Ontario N2H 3G1, Canada. E-mail:
pharrison@uwaterloo.ca
Juan Hernandez-Perez, Department of Biological Sciences, University of Calgary, 2500 University Drive NW,
Calgary, Alberta T2N 1N4, Canada. E-mail: juanhrnndzp@gmail.com
George K. Iwama,* Quest University Canada, Squamish, British Columbia, Canada. E-mail: george.iwama@
questu.ca
Robert J. Lennox,* Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. Current
address: Norwegian Research Centre (NORCE) Environment, Laboratory for Freshwater Ecology and
Inland Fisheries, Nygårdsgaten 112, 5008 Bergen, Norway. E-mail: robertlennox9@gmail.com
Shie-Yui Liong, Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail:
tmslsy@nus.edu.sg
Akinyi C. Nyaoke,* California Animal Health and Food Safety Laboratory System (CAHFS), San Bernardino
Branch, University of California Davis, Davis, California, USA. E-mail: canyaoke@ucdavis.edu
vii
Anne Berit Olsen, Norwegian Veterinary Institute Bergen, PO Box 1263 Sentrum, N-5811 Bergen, Norway.
E-mail: anne-berit.olsen@vetinst.no
Pål A. Olsvik, Institute of Marine Research, Bergen, Norway; and Faculty of Biosciences and Aquaculture,
Nord University, Bodø, Norway. E-mail: Pal.Olsvik@hi.no
Seng Keat Ooi, Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail: sk.
ooi@nus.edu.sg
Yan Xiang Ow, Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail:
tmsowyx@nus.edu.sg
Kathryn Peiman, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. E-mail:
KathrynPeiman@cunet.carleton.ca
Graham D. Raby, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada. Current
address: Great Lakes Institute for Environmental Research, University of Windsor, 2601 Union St,
Windsor, Ontario N3B 3P4, Canada. E-mail: graham.d.raby@gmail.com
Srivatsan Raghavan, Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail:
tmsvs@nus.edu.sg
Sofie C. Remø, Institute of Marine Research, Bergen, Norway. E-mail: Sofie.Remo@hi.no
Paul W. Sammarco, Louisiana Universities Marine Consortium (LUMCON), 8124 Hwy. 56, Chauvin, LA
70344-2110, USA. E-mail: psammarco@lumcon.edu
Kevin B. Strychar,* Annis Water Resources Institute, Grand Valley State University, 740 West Shoreline Drive,
Muskegon, MI 49441-1678, USA. E-mail: strychak@gvsu.edu
Jani T.I. Tanzil,* Tropical Marine Science Institute, National University of Singapore, Singapore. E-mail: jani.
tanzil@nus.edu.sg
Serene H.X. Tay, Department of Civil and Environmental Engineering, National University of Singapore,
Singapore. E-mail: serene.tay@u.nus.edu
Willem B. Van Muiswinkel,* Cell Biology and Immunology Group, Department of Animal Sciences,
Wageningen University, PO Box 338, 6700 AH Wageningen, the Netherlands. E-mail: willem.vanmuiswin-
kel@gmail.com
Mathilakath M. Vijayan,* Department of Biological Sciences, University of Calgary, 2500 University Drive
NW, Calgary, Alberta T2N 1N4, Canada. E-mail: mmvijaya@ucalgary.ca
Hélène Volkoff,* Departments of Biology and Biochemistry, Memorial University, Newfoundland and
Labrador, St John’s, Newfoundland A1B3X9, Canada. E-mail: hvolkoff@mun.ca
Rune Waagbø,* Institute of Marine Research, PO Box 1870 Nordnes, N-5817 Bergen, Norway. E-mail: rune.
waagbo@hi.no
Jonathan M. Wilson,* Department of Biology, Wilfrid Laurier University, 75 University Ave W, Waterloo,
Ontario, Canada. E-mail: jmwilson@wlu.ca
Patrick T.K. Woo,* Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
E-mail: pwoo@uoguelph.ca
viiiContributors
Preface
Credible evidence on climate change with global warming is rapidly accumulating, and interpretations of
available data are not disputed by reputable scientists. The aquatic environment (e.g. rivers, lakes, oceans) is
greatly affected, and major contributors to climate change are carbon dioxide (CO2; e.g. from the extensive
use of fossil fuels in transportation, by industries) and methane (CH4; e.g. from the gas and oil industry, from
agricultural activities including large-scale breeding and raising of livestock for food) released into the atmos-
phere. These ‘greenhouse gases’ trap heat radiating from the Earth and thus raise the environmental tempera-
ture. Also, dissolved atmospheric CO2 in the water not only acidifies aquatic ecosystems it also decreases the
amount of dissolved oxygen at higher temperatures. This may lead to hypoxic conditions for many aquatic
organisms including fish. Other negative effects associated with global warming include: (i) prolonged
droughts often associated with widespread forest fires in some regions; (ii) heavier than usual rainfalls with
high winds in other areas; (iii) changes in wind severity and patterns; and (iv) the increase and more rapid
melting of glaciers and the North and South Poles, elevating sea levels which can modify ocean currents and
salinities as well as alter aquatic food webs and the composition of animal communities. Many of these
changes directly affect aquatic organisms including their development, physiology, behaviour, health and
migration patterns.
The United Nations ‘2015 Paris Agreement’on climate change was signed by nearly 200 countries, and an
important part of the pledge was to reduce the output of greenhouse gases as soon as possible so that global
warming would be less than 2°C above pre-industrial levels. At present, it is about 1°C and is expected to
rise to 3°C or higher if we continue with our current energy policies. The recent ‘2018 UN Special Report’
tabled by the Intergovernmental Panel on Climate Change (IPCC; prepared by 91 authors and review editors
from 40 countries) indicates that the ‘Paris Agreement’ needs modifications. Many of the negative impacts
due to global warming would be reduced at 1.5°C compared to at 2°C or higher. Limiting warming to 1.5°C
is now considered possible especially if we make concerted efforts to integrate and implement most, if not
all, of the IPCC recommendations. The lower temperature increase would provide us with more time: (i) to
reduce the output of CO2 (e.g. by industries and in transportation to use less-polluting fuels, by national
governments to impose a global ‘carbon tax’); (ii) to provide incentives for the development of ‘cleaner’ fuels,
and for research into renewable and sustainable energy; (iii) to develop novel and practical strategies for
removal and storage of atmospheric CO2; and (iv) for aquatic organisms and ecosystems to adapt to changes
in the environment.
The other important greenhouse gas is CH4 but the amount of atmospheric CH4 is significantly lower than
CO2. However, scientists are beginning to be concerned about the gas as a CH4 molecule traps more heat
than a CO2 molecule. Also, the amount in the atmosphere continues to rise rapidly due to various anthropo-
genic activities and the concentration of the gas has doubled since the year 1800. One suggestion is that it
be converted into and be removed as CO2.
There are simple lifestyle changes we can make to reduce our individual carbon footprint. We suggest
focusing on two changes because they are within our control and consequently are achievable. Collectively,
these actions (also suggested by others at various times) will have significant impact on reducing emissions
of the two greenhouse gases. They are to reduce unnecessary travel (by cars and/or planes) and modify our
preference from an essentially red-meat diet to either a plant-based or a fish-based diet.
Animal protein is an important component in a well-balanced diet for humans. Fish is an excellent and
affordable protein for about 4.2 billion people, and we expect the demand for it will continue to increase as
our global population grows. However, the information we have on the effects of environmental changes on
fish and on its disorders/diseases are scattered in numerous specialized journals and reports. Consequently,
ix
we are delighted CABI, UK has commissioned the publication of a multidisciplinary two-volume set on cli-
mate change and its effects on fish. Chapter contributors and topics for review are selected by the editors,
and the chapters address current and expected changes, point out gaps in our knowledge, and articulate sug-
gestions for future studies.
The current volume, entitled Climate Change and Non-infectious Fish Disorders (CCNFD) is the first of
the two-volume set, and it focuses on the development, physiology and health of fish. CCNFD has 11 chap-
ters organized into two parts. Chapters 1 and 2 (Part I) are mainly for aquatic biologists including colleagues
who study non-infectious fish disorders and infectious fish diseases. These two chapters also set the stage for
discussions in the remaining nine chapters. Chapter 1 presents an overview (both historical and current) on
climate change while Chapter 2 is focused on abiotic changes in tropical marine and brackish ecosystems.
Part II (Chapters 3–11) is on non-infectious disorders such as abnormal development, neoplasms, metabo-
lism, feeding, the immune system, migration and overall health of fish. The companion volume to CCNFD is
Climate Change and Infectious Fish Diseases (editors: P.T.K. Woo, J.A. Leong and K. Buchmann), and will
include abiotic and biotic changes to temperate and tropical freshwater ecosystems, sequestration of atmos-
pheric CO2, and selected infectious microbial (12 chapters) and parasitic (10 chapters) infections on fish with
strategies to minimize negative effects ongoing changes to the environment have or will have on fish health
and production.
The principal audience for CCNFD includes research scientists in universities, aquatic biologists and fish
health consultants in private or government laboratories. It is also useful to environmentalists and ecologists
who monitor changes to the aquatic system. The book may be appropriate for the training of fish health
specialists, and for graduate students and senior undergraduates who conduct field studies on fish and/or
monitor changes to the aquatic environment.
xPreface
Previous titles by Patrick T.K. Woo
Fish Diseases and Disorders, Volume 3, 2nd Edition: Viral, Bacterial and Fungal Infections
Edited by P.T.K. Woo and D.W. Bruno
2011 944 pages ISBN 978 1 84593 554 2
Fish Diseases and Disorders, Volume 1, 2nd Edition: Protozoan and Metazoan Infections
Edited by P.T.K. Woo
2006 800 pages ISBN 978 0 85199 015 6
1 An Overview with Discussions on
Freshwater and Marine Ecosystems
in North America
Kevin B. Strychar1* Paul W. Sammarco2
1
Annis Water Resources Institute, Grand Valley State University, Muskegon,
Michigan, USA; 2Louisiana Universities Marine Consortium (LUMCON),
Chauvin, Louisiana, USA
*strychak@gvsu.edu
5:1
4:1
3:1
2:1
1:1
1930 2016
CLIMATE CENTRAL
Fig. 1.1. The number of high warming trends outpacing the number of cooling trends from 1930 to 2016. (Reprinted
from Climate Central, 2017, with permission.)
S UMME R
Summers
growing,
RING
AUTUMN
winters
shrinking
SP
WINTER
CLIMATE CENTRAL
Fig. 1.2. As warming trends begin to outpace cooling trends each decade, expected changes include shifting seasons
where summer lasts longer. (Adapted from Climate Central, 2017, with permission.)
Overview3
(A) SEASONAL WARMING (B) SEASONAL WARMING (C) SEASONAL WARMING
Montana Winter Spring Summer Autumn Minnesota Winter Spring Summer Autumn Michigan Winter Spring Summer Autumn
4°F
3°F 3°F
3°F
2°F 2°F
2°F
1°F 1°F
1°F
0°F 0°F
0°F
1970 2014 1970 2014 1970 2014
Linear Seasonal Trends Fitted to 1970–2014 Data Linear Seasonal Trends Fitted to 1970–2014 Data Linear Seasonal Trends Fitted to 1970–2014 Data
CLIMATE CENTRAL Source: NOAA/NCDC Climate at a Glance CLIMATE CENTRAL CLIMATE CENTRAL
Source: NOAA/NCEI Climate at a Glance Source: NOAA/NCEI Climate at a Glance
3°F 3°F
2°F 2°F
1°F 1°F
0°F 0°F
1970 2014 1970 2014
Linear Seasonal Trends Fitted to 1970–2014 Data Linear Seasonal Trends Fitted to 1970–2014 Data
CLIMATE CENTRAL CLIMATE CENTRAL
Source: NOAA/NCEI Climate at a Glance Source: NOAA/NCEI Climate at a Glance
Fig. 1.3. Season mean temperatures from the 1970s through to 2014 are compared in (A) Montana, (B) Minnesota,
(C) Michigan, (D) California and (E) Texas. (Adapted from Climate Central, 2017, with permission.)
WARMER AIR
Available
water
MORE EVAPORATION
MORE PRECIPITATION
1°F increase =
4% more water vapour
– Temperature +
CLIMATE CENTRAL
Fig. 1.4. The relationship between the warming atmosphere and its effect on precipitation. (Adapted from Climate
Central, 2017, with permission.)
If the Earth’s climate continues to warm, this will hold that water without condensing and producing
affect both our terrestrial and marine climatic rain. This is why the Sahara Desert has been
zones, their environmental characteristics (e.g. polar expanding in recent decades (Thomas and Nigam,
ice caps), and the organisms that reside within 2018; University of Maryland, 2018).
them. For instance, for every 0.6°C (1.0°F) increase In the northern latitudes, the polar ice caps,
in temperature, the atmosphere can hold 4% more which are the result of snow accumulated over
water vapour (Climate Central 2017). As a conse- thousands of years, will also decrease as a result of
quence, rather than equal volumes of snow being this warming. As snow and ice continue to melt and
observed in northern climates/latitudes from year disappear, the reflectivity or albedo (Zeng and
to year, more rain (rather than snow) may be expe- Yoon, 2009) of the Earth will decrease and more
rienced. In more tropical areas, that does not neces- radiant energy from the sun will be absorbed by the
sarily mean there will be more precipitation, land and the waters. The northern hemisphere pos-
mainly because the atmosphere in those areas can sesses more land than the southern hemisphere,
Overview5
The World’s Population in 2000, by Latitude
(horizontal axis shows the sum of all population at each degree of latitude)
Fig. 1.6. World population by latitude versus longitude. (Reprinted from Rankin, 2008, with permission.)
Aspects of both observed and predicted climate Literacy Council, 2015b). Approximately 97% of
change have been considered in detail for terrestrial that water is salt water and 3% is fresh water, but
ecosystems, and many studies have compared only 1% of the fresh water is readily available while
future developments for these habitats (e.g. Franklin the remainder is either locked up deep underground
et al., 2016; Hölzel et al., 2016). We will consider or in glaciers and ice caps. Despite this scarcity of
the potential effects of climate change in marine fresh water, 40% of the world’s fish species are
and freshwater habitats in the following sections. found in freshwater habitats (Tedesco et al., 2017)
where temperatures vary from 2°C in the winter to
summer temperatures as high as 24°C (Santhosh,
1.1.5 Temperate climate change, water
2018). Limited information, however, is currently
resources and fisheries
available describing how these freshwater ecosys-
Water, essential to all of life covers approximately tems will be affected by climate change. Most cli-
two-thirds of the Earth’s surface (The Environmental mate change models examine the effects of global
EQUATOR EQUATOR
CLIMATE CENTRAL
Fig. 1.8. Expected poleward movement of the jet streams in response to warming of the atmosphere as part of
climate change. (Reprinted from Climate Central, 2013, with permission.)
Overview7
described that while predator–prey interactions are Notaro et al. (2015) claim that in the short term,
important, the environment (i.e. climate change) the Great Lakes region will accumulate more lake-
had a much greater impact on species richness. effect snow; they will also, however, remain ice free
While changes in temperature (i.e. 0.1–0.2°C) may longer in the autumn and winter with earlier ice
appear to be small, researchers of many lakes break-up in the spring. As this region continues to
around the world demonstrate what some of the warm and experience greater evaporation, the long-
negative impacts of these changes can be in the long term precipitation trend will be for less snowfall,
term. Witze (2017) described changes in a lake in more rainfall, and delayed or shortened frost periods.
east Africa (Lake Tanganyika) where an increase of In the Arctic, should an ice-free summer occur, many
0.2°C per decade has resulted in less mixing, more authors have indicated this would cause a collapse in
stagnation, and nutrients becoming trapped at the plankton blooms which serve as food for birds, fish
lake bottom near the benthic community, resulting and whales (Berwyn, 2017). Examining the magni-
in biological productivity decreasing substantially tude and speed at which climate change is occurring,
(e.g. sardine catches have dropped by 50%). Lake Comte and Olden (2017) compared 80 years of
Poopó (Bolivia), Lakes Chad and Tanganyika marine versus freshwater laboratory experimental
(Africa), and Lake Urmia (Iran) are examples where data involving ~2960 ray-finned fishes (~485 species)
temperatures have increased, lake volumes have to thermal sensitivity. They suggested the data showed
decreased, and the plant and animal species are significant thermal sensitivity to tropical marine fishes
disappearing (Weiss et al., 2018). Read (limnologist, and freshwater fishes located at higher latitudes in the
US Geological Survey, Middleton, Wisconsin; cited northern hemisphere; these fishes will either relocate,
in Witze, 2017) and colleagues examined more than rapidly adapt or acclimatize, or the local population(s)
2000 lakes in Wisconsin (USA) from 1989 to 2014 will die. Considering the frequency and duration of
and describe how fish populations have changed each warming trend, and the evolutionary trends
over this period. Many of these lakes experienced regarding how quickly a species can adapt, we predict
decreases in walleye (Sander vitreus) fish popula- that many fish species will be unable to cope with
tions. Projecting how lake temperatures change such changes. As climate change and global warming
through to 2089, these authors describe how major continues, many scientists predict: (i) increases in
decreases in walleye populations would most likely stream and river flow (based on changes in seasonal
occur in more than 75% of the state’s lakes. These intensity and distribution of rainfall) (Yin et al., 2017;
results have been supported by Hansen et al. (2016) Worqlul et al., 2018); (ii) increased precipitation,
who similarly predict a natural decline of walleye, flooding and evaporation (The Climate Reality
which prefer cooler waters, versus largemouth bass Project, 2017; Wang et al., 2017); (iii) as evaporation
(Micropterus salmoides), which prefer warmer continues to become exacerbated, the disappearance
water. Hansen et al. (2016) also concluded that lake of some lakes and streams (United Nations
temperatures will increase and further suggest that Environment Programme, 2018); and (iv) increased
if greenhouse gas emissions continue to escalate, frequency of pathogen outbreaks (Taylor et al., 2018;
temperatures may exceed 2.8°C (5.0°F) by 2090. Zhan et al., 2018) and algal blooms, and decreases in
With lower greenhouse gas emissions, they project the abundance and diversity of particular species.
that lake temperature may only reach ~2.5°C above While in some ways these changes might be wel-
mean current averages by the year 2090. come to some, for example farmers across the USA
In the Great Lakes, ice cover has steadily declined have experienced growing seasons longer than
since the 1970s (Climate Central, 2016). This low- usual by nearly 2 weeks and earlier springs (Kunkel,
ered ice cover results in warmer surface waters, 2016), parallel changes are not welcome to others.
which then compounds problems of pollutants, algal In colder climates, long winters support local econ-
blooms and the quality of drinking water. The vast omies via ice fishing, hockey, snowmobiling and
volumes of water (oceans and, to a lesser degree, other outdoor activities. In addition, the ‘deeper
freshwater lakes, etc.) absorb and retain a great deal freeze’ helps control disease. Milder winters will
of heat energy from the sun. On an annual basis, the allow increased survival of disease-carrying pathogens
upper ocean layers are considered to have absorbed (e.g. Lyme disease – Pfeiffer, 2018; mosquitoes –
more than 43 times (i.e. 43 ×) the total amount of European Commission Joint Research Centre,
energy consumed by the US population in 2012 (last 2018) and increased respiratory illnesses caused from
year data was available). allergies (Staudt et al., 2010). Many fruit-bearing
Overview9
The expansion of coral reefs into previously tem- increasingly blue which is similar to the blue water
perate or sub-temperate regions is expected to have a in deeper mesophotic zones (University of Hawai’i,
latitudinal limit. To what extent this poleward 2018; Fig. 1.9). This light spectrum is not well suited
encroachment will proceed remains to be seen. The to the growth of shallow-water tropical corals. The
rate at which it occurs will be limited by reproductive third physical factor which will most likely limit the
success, larval dispersal and larval recruitment – and shifts in temperate and tropical climatic zones is a
this will be at least partially environmentally seasonal one. As the seasons move from summer to
mediated. winter, day length grows increasingly shorter in the
winter. Shorter day lengths translate to less light per
day for any benthic algal-symbiotic organism, such
1.3.2 Light
as a coral. Thus, not only will the light penetration
That limit of northward and southerly expansion of become more limited, and the light spectrum be
coral reefs into previously temperate regions will changed with latitude, so will the total amount of
most likely be limited by three physical factors. The light available to shallow-water or deep-water cor-
first involves the amount of light penetrating to the als during the late autumn, winter and early spring
benthic surface. As one moves further north from periods (Fig. 1.10; Fondriest Environmental Inc.,
the Tropic of Cancer and south from the Tropic of 2014).
Capricorn, the sun’s rays impact the sea at an angle
which decreases with increasing distance from the
1.3.3 Temperature
equator (Harris, 2018). The amount of light reach-
ing a zooxanthellate coral is critical to its survival. Another limiting factor will be seawater tempera-
The second factor is the character of the wave spec- ture. Corals thrive within a narrow temperature
trum associated with that decreasing light. As that range – ~18–28°C (Levinton, 2017). Much recent
angle decreases, light passes through more and more research regarding temperature tolerance has
water to penetrate to a given depth. As the maximum focused on temperatures increasing beyond the
depth of light penetration decreases, the colour spec- known limits for corals. This has been spurred by
trum reaching the benthic surface changes, becoming the devastating mass coral bleachings observed to
7.5 m 25'
15.0 m 50'
90° North
0.8
0.6
occur repeatedly since the early 1980s (Goreau and associated with shallower depths which may sur-
Hayes, 1994; Hoegh-Guldberg et al., 2007; Hughes pass their temperature tolerances (e.g. 31.1°C, east-
et al., 2017). Much less attention has been paid to ern Gulf of Mexico, July–August 2017; NOAA,
the lower limit of the corals’ temperature range 2018). The development of these two coral reefs
(Coles and Jokiel, 1978; Coles and Fadlallah, 1991; may well be attributed to the Yucatan (Gyory et al.,
Saxby et al., 2003). Yet this factor will most likely 2013) and Loop Current (Texas Pelagics, 2016) of
help us to understand what may define the latitudi- the Gulf of Mexico, both of which are derived from
nal limit of expansion of tropical and subtropical the Caribbean Current. These currents impact the
corals into the current temperature zones. In the edge of the continental shelf and bathe these banks
Abrolhos Islands, Australia, zooxanthellate corals in warm Caribbean seawater year-round. Because
can exist below 18°C, but their growth rates are of this, seawater temperatures remain within the
diminished (Johannes et al., 1983). Their calcifica- physiological tolerance limits of corals and other
tion rates, however, remain stable at these marginal zooxanthellate organisms, providing them with an
cool temperatures (18°C). Competition for space environment conducive to calcium carbonate reef
with benthic algae in these sub-temperate waters was development.
determined to be the limiting factor for further On the other hand, the Stetson Banks, which are
southerly expansion of the coral community. These only 48 km to the north-west of the Flower Garden
factors may well contribute to setting the limit for the banks, and ~157 km from shore are not true coral
southerly and northerly expansion of corals under reefs. They are comprised of uplifted layers of clay-
current climate change/global warming conditions. stone and sandstone (Lankford and Curray, 1957).
This point is best illustrated by an example from The cooler winter temperatures, which fall below
the National Oceanic and Atmospheric Admin 18°C there, do not permit the tropical and sub-
istration (NOAA) Flower Garden Banks National tropical corals to contribute substantially to the
Marine Sanctuary, Gulf of Mexico where there are development of a calcium carbonate cap. Thus,
the two most northerly coral reefs. They occur at only a few degrees difference in temperature, at the
the edge of the continental shelf, approximately 185 lower end of the corals’ temperature range, can
km south-west of Galveston, Texas, USA. They pos- limit or thwart reef development.
sess well-developed coral communities and are gen-
erally protected from coral bleaching, which has
1.3.4 Replacement of zooxanthellate
decimated other reefs in the Caribbean and around
corals by azooxanthellate corals in the reef
the world. This protection is generally attributed to
community?
their distance from shore, associated insulation from
contaminants derived from groundwater runoff, and Could temperate ahermatypic/azooxanthellate c orals
from the warm summer seawater temperatures replace zooxanthellate corals, colonizing warmer
Overview11
habitats in lower latitudes? Azooxanthellate scler- water with low light penetration (Sammarco et al.,
actinian corals exist throughout the world’s oceans 2016). It has been suggested that mesophotic reef
(Freiwald, 2002). They can disperse successfully, as communities may be connected to shallow coral
do the zooxanthellate corals, and this has been reef ecosystems, and that they may provide an
demonstrated through their dispersal to and colo- important source of larvae for threatened coral and
nization of offshore oil and gas production plat- fish populations in shallower water, and, indeed,
forms in the Gulf of Mexico (Sammarco et al., there is some genetic evidence for this (van Oppen
2012a, b). The only azooxanthellate species which et al., 2011).
have been able to proliferate to an extraordinary This concept may be correct, to a certain degree;
degree and dominate some benthic communities in but there are several constraints regarding recoloni-
the Gulf of Mexico are the invasive Indo-Pacific zation from this deeper-water coral community in
corals Tubastraea coccinea and Tubastraea micran- the event of mass shallow-water mortality. First,
thus (Sammarco et al., 2010, 2012a, b, 2014). corals which exist at these deeper depths are adapted
These species have been able to monopolize benthic to grow and reproduce in that environment. The
substratum within several years of colonization. endosymbiotic zooxanthellae of shade-adapted cor-
Ahermatypic corals, particularly those in deep als, or deep-water corals, have more chlorophyll per
water and in temperate and polar climatic zones zooxanthellar cell, being adapted for very efficient
also possess colder temperature tolerances than photon capture in a region where light is scarce
their hermatypic counterparts. In summary, it (Porter et al., 1984). There is evidence that these
would appear that ahermatypic corals will remain populations would adapt to new environmental
an important part of the benthic community as conditions (Dustan, 1979, 1982). Secondly, the spe-
global warming continues to increase. They will cies diversity of corals is lower in deeper waters and
not, however, assume the same niche as the her- they represent a smaller proportion of the shallow-
matypic scleractinian corals, since they will not be water coral community (Bak et al., 2005; Kahng
significant contributors of calcium carbonate to the et al., 2010; Bongaerts et al., 2017). There are some
benthic substratum. In general, their growth will be species overlaps between the deeper and shallower
less extensive than those of their hermatypic coun- habitats with some species which only occur in these
terparts. Invasive azooxanthellate coral species environments (Loya, 1972). It is possible that the
such as T. coccinea and T. micranthus will retain latter may not be adapted to shallower water. Thus,
their ability to dominate the benthos in isolated the question of recolonization from deeper waters
habitats. They will not, however, build calcium remains unknown and needs further research.
carbonate-based reefs, as their hermatypic counter- Replacement of dead or dying coral communities
parts, and if the oceans waters warm to 34°C, they vertically from deep-water reefs is possible but may
will not survive (Strychar et al., 2005). be limited to some degree by adaptations of deep-
water species to increased light levels and other
environmental factors. Also, the range of species
1.3.5 Mesophotic reefs as potential larval
which could colonize shallower depths is probably a
sources for shallow-water reefs
small subset of those already living there.
It has been suggested that those zooxanthellate cor-
als which die in shallow water due to rising seawa-
1.3.6 Origin(s) of recolonizing corals
ter temperatures could be replaced by zooxanthellate
corals which live in deeper, somewhat cooler and Could damaged reefs be recolonized horizontally
darker waters on mesophotic reefs (Serrano, 2013; rather than vertically, as discussed above (i.e. from
Laverick et al., 2016). These reefs are insulated by other latitudes)? This actually has a high probability
depth from high-temperature environmental per- of occurring. This is based on the geological and
turbations. Mesophotic reefs may be defined as palaeontological records. It would most likely not
follows: ‘Mesophotic coral reef ecosystems (MCEs) be a short- or medium-term solution to the problem
occur in tropical regions extending from depths of of replenishing reefs severely affected by increased
30 m to the limit of zooxanthellate corals (approx. seawater temperatures, but a long-term one requir-
150 m)’ (Ocean Research and Conservation Group, ing most likely minimally hundreds of years.
2018). They are characterized by light-dependent There are precedents for this in the geological
coral, algae and other organisms that are found in record. For example, the Caribbean experienced two
Overview13
The possession of, say, three clades requires more
1.3.10 Immune responses of coral relative
genetic variation and metabolic energy than pos-
to heat stress
sessing a single clade. Accommodating each clade
requires both the genetic code to do so and also, If we assume that bleaching (i.e. heat stress) is tied
upon demand, the energetic resources for the pro- to the immune system, and that zooxanthellae are
duction of recognition cells. Accepting multiple maintained within the host by being recognized
clades multiplies the demand on genetic material immunologically as ‘self’, then the question arises
and energetic resources. Heat stress increases the regarding how the number of clades carried by a
demand on the coral host by producing mac- coral affects susceptibility to bleaching. The most
rophages to destroy dysfunctional algal cells of one logical and parsimonious answer would be that
clade while, for example, in a three-clade system, having more than one clade with differential tem-
maintaining the other two. Similarly, it is likely that perature susceptibilities per clade confers better
those corals that have multiple clades are more fitness on the holobiont. This is because of the
susceptible to heat stress and mortality than those cumulative broader temperature tolerances between
possessing a single clade, because there is less the clades. However, more clades require more
energy available to deal with this stress and other immunorecognition proteins to address the pres-
confounding stresses. ence of benign symbionts. Possession of a single
Azooxanthellate corals represent the extreme end clade may mean that only one protein is required.
of this spectrum because they lack zooxanthellae. The system whereby several clades in a single col-
T. coccinea may serve as an example of this point. ony enhance survival is driven by simple directional
This species does not possess zooxanthellae, but selection and specialization of temperature toler-
does possess pigments. The animal tissues of this ances. These tolerances may be spread among two
species will bleach its pigments under heat stress, but or more symbiotic clades, conferring a broader
not until seawater temperature reaches > 36°C temperature tolerance for the holobiont. The data,
(Strychar et al., unpublished data). This is a very however, suggest a different situation. For example,
resilient coral and is temperature resistant. Some Acropora hyacinthus (Great Barrier Reef) can pos-
corals are aposymbiotic, wherein possession of sess up to three clades simultaneously in a colony;
zooxanthellae is facultative. An example of such a and yet, as shown through controlled laboratory
coral is Oculina, including Oculina diffusa, the experiments, this species is highly susceptible to
genus of which occurs throughout the western bleaching with only modest increases in seawater
Atlantic and the Mediterranean. O. diffusa has at temperatures. It is the most temperature sensitive of
least two clades of zooxanthellae, B-1 and B-2 three species from three families tested. On the
(LaJeunesse, 2001, 2002, 2004; Banaszak et al., other hand, Favites complanata possesses two
2006; Riddle, 2006) and exhibits bleaching under clades of zooxanthellae and is less susceptible to
heat stress (Savage et al., 2002) and disease condi- bleaching than A. hyacinthus. Further, Porites solida
tions (Kushmaro et al., 1996, 1997, 1998, 2001; has only one clade of zooxanthellae and is the most
Rosenberg et al., 1998; Sutherland et al., 2004; resistant to bleaching and least sensitive to elevated
Anonymous, 2009). We would predict that, since temperatures. Furthermore, the azooxanthellate coral
accepting a zooxanthellar clade is a presence/absence T. coccinea, possessing no zooxanthellae, exhibits no
character, it would exhibit the same level of immu- signs of heat stress up to temperatures of 36°C, at
nity as a zooxanthellate coral with the same poten- which point the coral begins to ‘bleach’ its tissue
tial number of clades. Likewise, we would expect pigments and eventually dies. In this case, the
this species to have similar heat sensitivities or sus- immune system need only recognize ‘self’ cells, as
ceptibility to disease as other corals that accept three there is no need to allow other symbiotic cell types
clades of zooxanthellae. In fact, Acropora formosa to enter the organism. This would imply that neces-
can accept three clades of zooxanthellae and is listed sity for a relatively sophisticated immune system is
on the International Union for Conservation of diminished in a symbiotic coral, whereas in azoox-
Nature (IUCN) red list of endangered species anthellate coral, immunity is focused on self-
(Carpenter et al., 2008) because of mass mortalities defence. We hypothesize that this is because the
due to both heat stress and disease. Oculina vari- host, when it invests energy into defence, directs all
cosa, known to have only one zooxanthellar clade, of it into a single macrophagic type; metabolic
is similarly listed (Roberts and Hirshfield, 2004). energy is not allocated across the production of
Overview15
syndrome) in humans – a chronic infection which receded zooxanthellate ones in evolutionary time.
p
suppresses the immune system, opening the host to It has been proposed that scleractinian corals
secondary infections, which can be fatal. Bleaching evolved 225 MYA during the mid-Triassic (Romano
is an acute response to heat perturbation; disease is and Palumbi, 1996), and endosymbiosis with zoox-
a chronic response to a pathogenic perturbation. We anthellae evolved 200 MYA during the late-Triassic
raise the question, are diseased corals compromised (Stanley and Swart, 1995; Stanley and van de
to a greater degree than temperature-bleached cor- Schootbrugge, 2009). Azooxanthellate corals
als because the probability of recovery may be appear to have had less adaptive radiation than
lower due to a potential chronic infection? If so, can their zooxanthellate counterparts, making them
we expect the immune response to vary species- more evolutionarily conservative. For example, the
specifically for the coral and the disease, respec- zooxanthellate coral genus Acropora (Acroporidae)
tively? Alternatively, perhaps the query should be is known to have arisen about 60 MYA during the
the other way around. Are corals stressed due to Paleocene (Carbone et al., 1994) or 45 MYA dur-
high temperature under pre-bleaching or bleaching ing the Eocene (von Fritsch, 1875; Latham, 1929),
conditions and compromised allowing infection by and currently has as many as 180 described species
disease? And do they have a lower probability of (Veron, 1996), mostly in the Indo-Pacific. One of
recovery due to infection? the reasons for their broad phylogenetic radiation
may be derived from their mode of reproduction
(simultaneous multi-species broadcast spawning of
1.3.12 Evolution of zooxanthellate versus
sperm and eggs into the water column) and their
azooxanthellate corals
propensity for hybridization (Willis et al., 2006).
Azooxanthellate corals appear to have broader The genus Tubastraea (Dendrophylliidae) is a
environmental tolerances than zooxanthellate ones. brooder and, similar to Acropora, apparently
They are not depth-restricted because of light. They emerged during the early Eocene, 55 MYA. Yet
also have broader temperature tolerances. They are Tubastraea is known to have only eight species,
heterotrophs. Increases in nutrient enrichment are two of which are extinct (Cairns, 2001). This genus
often accompanied by increases in plankton popu- is approximately 10 million years older than
lations, which can serve as a stress for zooxanthel- Acropora. The major point is that azooxanthellate
late corals but as additional food sources for the corals may be the older, more conservative, and less
azooxanthellate corals. A comparison between azo- specific group in terms of environmental limita-
oxanthellate and zooxanthellate corals may be tions yet have retained the ability to disallow colo-
somewhat analogous to a comparison between nization by foreign symbionts by possessing more
horseshoe crabs and fruit flies, respectively. caspases.
Horseshoe crabs (Tachypleus tridentatus) are an
extremely old taxon, dating back in their current
1.4 Climate Change/Global Warming
morphological form to the late Ordovician, approx-
and the Long-term CO2 Problem
imately 450 million years ago (MYA) (Rudkin
et al., 2008). Their physiological tolerances are very The problems we face with climate change and
high with respect to variations in temperature, global warming will not be solved in the short term.
salinity, oxygen concentrations, etc. (Sekiguchi and This is because the amount of: (i) atmospheric CO2
Shuster, 2009). On the other hand, Drosophila spp. is already massive; (ii) heat this has created second-
(fruit flies) have a very high genetic variability and arily in our atmosphere over the past 150 years is
have speciated numerous times. Currently 1450 elevated; and (iii) heat which has, in turn, been
species of Drosophila are documented to occur introduced into our oceans is increasing. It has
naturally. The genetic variability in this genus is been estimated that > 25 × 1022 KJ of heat have
formidable, and the physiological and environmen- been absorbed into the oceans since 1957 as a by-
tal tolerances of each species are very narrow product of CO2 release (Church et al. 2011). The
(Dobzhansky, 1970; Steiner, 1977). ocean is a large heat sink. Water also has a high
Zooxanthellate corals are more species diverse thermal capacity, which means it is slow to warm
than the azooxanthellate ones – at the generic and and slow to cool. Even if we stop introducing CO2
family levels, in the Caribbean and the Indo-Pacific into the atmosphere today, it will be 2075 before
(Veron, 1996, 2000). Azooxanthellate corals the oceans will begin to cool.
Overview17
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*jani.tanzil@nus.edu.sg
SEAGRASS
CORAL
Fig. 2.1. Global mangrove, seagrass and coral distribution in relation to mean sea temperature. Regional divisions are
based on tropical (> 24°C) and temperate (4–24°C). (Adapted from Wells, 2006.)
There are, however, vast differences and uncertain- biological, physical and human systems has never
ties in the extent of model-projected climate been more compelling, in part because of improved
changes. These can be attributed to several factors reporting of published studies from under-represented
such as the climate model (both global and regional) regions of the world especially in the tropics
dynamics, spatial resolutions of these models (Rosenzweig and Neofotis, 2013).
(including the difficulty in downscaling), inade- In this chapter, we present updates on current
quate understanding of atmospheric and oceanic conditions and expected changes on key abiotic
processes that lead to limitations in modelling and parameters (i.e. temperature, rainfall, circulation,
different assumptions of climate scenarios. These seawater carbonate chemistry, sea level, salinity, oxy-
cascades of uncertainties lead to a need for a better gen, nutrients) and the range of predicted impacts on
quantification and understanding of climate pro- key tropical marine and brackish water ecosystems,
jections. Especially, when the results of the climate namely coral reefs, seagrasses and mangroves.
models are used as inputs for impact models, these
uncertainties propagate further, thus augmenting
2.1.1 Rising temperatures
the uncertainties in climate projections (Mearns
et al., 2001). However, despite such uncertainties, While rates of warming vary between regions,
the evidence linking impacts of climate change on there is clear evidence that surface air and seawater
(°C)
–2 –1.5 –1 –0.5 0 0.5 1 1.5 2 3 4 5 7 9 11
(%)
–50 –40 –30 –20 –10 0 10 20 30 40 50
(m)
–0.4 –0.3 –0.2 –0.1 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8
Fig. 2.2. Change in average surface temperature (A), change in average precipitation (B) and change in average
sea level (C) based on multi-model mean projections for 2081–2100 relative to 1986–2005 under the representative
concentration pathway (RCP)2.6 (left) and RCP8.5 (right) scenarios. (From IPCC, 2014.)
100 m
30°N
250 m
PACIFIC 500 m
Taiwan OCEAN 750 m
Strait
a
St
u Se
ra
it Sea Current
4000 m
Equator r
k
sa Halmahera
Malu
Karimata Strait as
ak t Sea
M trai 4500 m
S Lifamatola
~45 m Passage
Banda 5000 m
Java Sea
ait e
bo
Pa
Lo
280 m Om or 6000 m
Tim
SEC 6500 m
Fig. 2.3. Schematic of the South China Sea Throughflow (dashed red arrows), the Indonesian Throughflow (solid red
arrows) circulations and reversing monsoon currents (dashed orange arrows). NEC, North Equatorial Current; NECC,
North Equatorial Counter Current; SEC, South Equatorial Current.
formation in the Southern Ocean and stronger through two pathways – one via the Mindoro Strait
stratification of the water column caused by a into the Sulawesi Sea, and another via the Karimata
slowdown of upwelling from the deep Pacific Strait into the Java Sea. The shallow Karimata Strait
Ocean. Changes to the ITF will not only effect the pathway of SCSTF brings water from the South
heat flux between oceanic basins, but also the envi- China Sea into the Makassar Strait in the upper
ronment in its pathways, especially in the Maritime 45 m layer and is mainly dependent on local mon-
Continent, which extends through the world’s soon wind (Gordon et al., 2012). The Mindoro
marine biodiversity hotspot (Fig. 2.1). Strait pathway of SCSTF impacts the ITF, especially
Less known and understudied, but likely to be during El Niño events (Tozuka et al., 2009; Gordon
important to the Maritime Continent, is the South et al., 2012). As mentioned, the ITF is weaker dur-
China Sea Throughflow (SCSTF), which has its ing El Niño and this is globally balanced by the
main inflow through the Luzon Strait and outflows SCSTF which intensifies during El Niño events due
via the Karimata, Mindoro and Taiwan straits to higher flow from the western Pacific Ocean
(Fig. 2.3). The SCSTF acts as a heat and freshwater through the Luzon Strait which induces an increase
conveyor, playing a potential important role in of southwards flow of buoyant surface water into
regulating the SST pattern in the South China Sea the Sulawesi Sea via the Mindoro Strait. This inten-
and its adjoining tropical Indian and Pacific Ocean sification of the SCSTF inhibits tropical Pacific
(Qu et al., 2006). The Kuroshio Current drives the surface water injection into the Makassar Strait.
pathway of SCSTF through the Luzon Strait in the During La Niña, the impact of the SCSTF is mini-
western North Pacific Ocean as it moves north- mal which allows inflow from the tropical Pacific
wards. As the South China Sea is a recipient of that intensifies the ITF.
heavy rainfall, the surface water of the SCSTF is Another important ocean circulation process
freshened as it moves across the basin (Qu et al., that climate models predict will weaken over the
2009). Water then exits the South China Sea basin 21st century and impact the tropics is the Atlantic