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JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA
124
nigrocincta is native to Indonesia and
Mindanao Island in the Philippines. There are Muli et al. (2014) reported that A. mellifera
also a number of subspecies and strains of adansonii (honeybee) is about the most
Apis (Baffoni et al., 2016). common that has been given due attention in
Nigeria probably because of its beneficial
Honey is a sweet food created by bees using attributes as a natural agent of pollination and
nectar from flowers. It is composed of 17% as the most important of all insect pollinators.
water and 82% carbohydrates; it has low The aim of the study was to explore the
content of fat, dietary fiber, and protein. A importance of species traits and species
mixture of sugars and other carbohydrates, phylogenetic relationships
honey is mainly fructose (about 38%) and
glucose (about 32%), with remaining sugars MATERIALS AND METHODS
including maltose, sucrose, and other The study was carried out in apiaries located
complex carbohydrates. Honey also contains in Ago-Iwoye in Ijebu North Local
minerals, vitamins and metals. Compared to Government Area. Ago Iwoye has a latititude
other bee species, honey bees have been of 6.9424oN and a longitude of 3.9216oE
reported to increase the yield in animal respectively while Odo-Epo has a latitude of
pollinated crops which account for 35% of 6.7888oN and a longitude of 3.9684oE.
the global food production (Guo et al., 2015).
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
Oladipupo-Alade et al., 2021 125
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA
126
Citrate Utilization Test was added and shaken gently; it was allowed
About 2.4 g of citrate agar was dissolve in to stand for 20 mins to permit the reagent to
100 ml of distilled water. About ten rise. A red or red-violet colour at the top
milliliters (10 ml) of citrate medium was surface of the tube indicates a positive result
dispensed into each tube and covered, then while yellow colouration indicates a negative
sterilized and allowed to cool in a slanted result.
position. The tubes were inoculated by
streaking the organisms once across the Urease Test
surface. A change from green to blue The surface of a urea agar slant was streaked
indicates utilization of the citrate. with a portion of a well-isolated colony or
inoculate slant with 1 to 2 drops from an
Oxidase Test overnight brain-heart infusion broth culture.
Few drops of oxidase reagent were added The cap was left loosely and incubates the
onto Whatman filter paper. Smeared with a tube at 35°-37°C in ambient air for 48 hours
loop-full of organisms. Colonies from low to 7 days. It was examined for the
glucose, non-selective media were used. development of a pink colour after 7days.
Appearance of purple color within 30
seconds indicates a positive test.
Phylogenetic Analysis of 16SrRNA Genes
Sugar Fermentation Tests of Bacterial Isolates from Well Water and
Sugar indicator broth was prepared using Soil Sample
peptone water medium containing 1% The phylogenetic analyses based on the 16S
fermentable sugar and 0.01% phenol red. rDNA gene were further used to characterize
About ten milliliters of sugar broth was the organism in order to establish
dispensed into each of the test tubes, durham relationships among them. The partial 16S
tube which would trap the gas if produced rDNA sequences obtained were utilized in
was inverted carefully. The test tubes were search of reference nucleotide sequence
autoclaved and inoculated with a loopful of available in NCBI GenBank database using
24 h old culture of the test organisms after BlastN algorithm. Maft version 7.0 was
then incubated for 2-7 days at 36±1°C and employed in the multiple alignment of
observed daily for acid and gas production. nucleotide sequences while trees were drawn
Yellow colouration indicates acid production based on character method (Maximum
while gas production was indicated by Likelihood) for comparing set of data against
displacement of the medium in the durham set of models of evolution using MEGA 7.
tube. These techniques include: distance based
(Neighbour-Joining (NJ) with cluster-based
Indole Test algorithm) used in calculating pairwise
Tryptone broth (5 ml) was placed into distance between sequences and group
different test tubes after which a loopful of sequences that are most similar and character
the bacterial isolates was inoculated into the based method (Maximum Likelihood) for
test tubes, leaving one of the test tubes comparing set of data against set of models of
uninoculated to serve as control. The test evolution to the best model for the variation
tubes were then incubated at 37 °C for 48 h. pattern of sequences.
After incubation, 0.5 ml of Kovac’s reagent
some were mucoid, some were wet and some
RESULTS were dry, also, in colour some were whitish,
The results of the morphological appearances gold yellow, dull green, and some were
of sampled honey bees were observed to have colourless as presented in Table 1.
different colonial patterns, all were flat but
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
Oladipupo-Alade et al., 2021 127
Table 1. Microbiological characteristics of sampled honey bee bacteria isolates from OOU
and Odoepo
Isolation Isolation
AGW1 Flat mucoid colourless, cream colony
AGW2 flat mucoid whitish cream colony
AGW3 Flat dry whitish cream colony
AGW4 Flat mucoid cream, gold yellow colony
AGW5 Flat dry cream colony
AWW4 Flat dry cream colony
AWW5 Flat dry whitish cream colony
IJW1 Flat dry whitish cream colony
IJW2 Flat mucoid whitish colourless colony
IJW3 Flat dry whitish cream colony
IJW4 Flat dry green colony
IJW5 Flat dry cream colony
ORW1 Flat mucoid colourless colony
ORW2 Flat dry pink colony
ORW3 Flat dry cream colony
AGW6 Flat mucoid cream colony
AGW7 Flat dry cream colony
AGW8 Flat dry cream colony
AGW9 Flat dry whitish cream colony
AGW10 Flat dry cream colony
AGW11 Flat dry colourless, creamcolony
The corresponding results for the The result of the percentage identity and
biochemical tests carried out indicate that closest accession of the isolates showed that
most of the isolates are gram positive and Enterobacter aerogenes had the closest
gram-negative cocci. Result from oxidase accession number on serial number 6.7. and
test showed purple colouration within 5 – 10 8 also recorded the highest percentage
minutes. The result of sugar fermentation test identity (99%) while in another study, Billiet
revealed a change in colour from purple to et al. (2015) reported Phyla Firmicutes,
yellow indicated acid production due to Actinobacteria, and alpha-, beta-, and
fermentation of the sugar and gas production gamma-proteobacteria as major microbiota
was shown by the presence of bubble in the in the gut of Honey bee. (Table 3).
inverted Durham tubes. For the indole test a
red ring formation was seen at the surface of
the tubes as positive test. Urease positive
cultures produced a purple pink color as a
result of change in the colour of the indicator
for urease positive isolates and are presented
in Table 2.
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA 128
Table 2. Biochemical characterization of bacterial isolates recovered from OOU and Odoepo, Ogun State
Sample GRM CAT OXI CIT INDO UREA COA LAC MAL GLU SUC ORG
AGS1a -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AGS1b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AGS1c -ve rod +ve -ve -ve +ve -ve -ve +ve +ve +ve +ve E. coli spp.
AWS2a +ve coci +ve -ve +ve -ve +ve +ve +ve +ve +ve +ve Staphylococcus spp.
AWS2b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AWS2c -ve rod +ve -ve -ve -ve -ve -ve -ve -ve +ve -ve Shigella spp.
AWS2d -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
IJS3a -ve rod +ve +ve +ve -ve -ve -ve -ve -ve -ve -ve Pseudomonas spp.
IJS3b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
IJS3c -ve rod +ve -ve -ve -ve -ve -ve -ve -ve +ve -ve Shigella spp.
IJS3 d -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
ORS4a -ve rod +ve -ve +ve -ve +ve -ve +ve +ve +ve -ve Proteus spp.
ORS4b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
ORS4c -ve rod +ve -ve -ve +ve -ve -ve +ve +ve +ve +ve E. coli spp.
AGS2a -ve rod +ve -ve -ve +ve -ve -ve +ve +ve +ve +ve E. coli spp.
AGS2b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AGS2c -ve rod +ve -ve -ve -ve -ve -ve -ve -ve +ve -ve Shigella spp.
AGS2d -ve rod +ve -ve -ve -ve -ve -ve -ve -ve +ve -ve Shigella spp.
AGS2e -ve rod +ve -ve -ve +ve -ve -ve +ve +ve +ve +ve E. coli spp.
AGS3a -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AGS3b -ve rod +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve Salmonella spp.
AGS3c -ve rod +ve -ve -ve +ve -ve -ve +ve +ve +ve +ve E. coli spp.
Key: -ve- Negative, +ve- Positive, NA- Nutrient agar, SSA- Salmonella Shigella agar, EMB- Eosine Methylene Blue, GRAM- Gram reaction, CAT- Catalase, OXI-
Oxidase, CIT- Citrate, IND- Indole, COA- Coagulase, LAT- Lactose, MAL- Maltose, GLU- Glucose, ORG- Organism
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
Oladipupo-Alade et al., 2021
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Table 3. Percentage Identity and closest accession of Isolate from OOU and Odoepo
Bacteria Isolates Percentage Closest S/No.
identity accession
Aeromonas hydrophila 84% KY938147.1 39
Cedeca davisae 88% MF111213.1 3
Cronobacter dublinensis 84% MK557935.1 4,5
Enterobacter aerogenes 99% FJ976592.1 6, 7, 8
Enterobacter asburiae 94% MK577384.1 40
Escherichia coli 89% MK621270.1 35-38
Klebsiella michiganensis 97% MG516135.1 19
Klebsiella oxytoca 98% KP886828.1 11,16
Kluyvera cryocrescens 99% MK047301.1 9,10
Providencia alcalifaciens 97% MG754372.1 14,17
Providencia vermicola 91% KJ833796.1 12
Pseudomonas aeruginosa 93% MK288113.1 27-34
Pseudomonas plecoqlossicida 95% MK467545.1 18, 20
Salmonella enteric 98% LS483428.1 13
Serratia marcenscens 94% LC041158.1 21-26
Serratia nematodiphila 93% MK447122.1 15
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA
130
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from 590 cfu/mgml to 175 cfu/mgml of gram analyzed. Additionally, most of the 16S
positive bacteria on Nutrient and MRS agar. rDNA gene sequences were found very
comparable.
A maximum likelihood reconstruction of the
phylogenetic analysis of bacteria isolates Most of these bacteria were broadly
from honey bees in the area under study is classified as facultative anaerobes, tolerant of
similar to one obtained from the work of acidic environments and ferment sugars to
Anderson et al. (2013), both works recorded produce lactic or acetic acid. These bacteria
distance phylogenetic tree for 16 bacterial are considered beneficial gut inhabitants of
isolates and 25 bacterial isolates respectively humans and other animals and are involved
presented by the neighbor-joining method. in immunomodulation, interference with
Several actinobacterial isolates were enteric pathogens and the maintenance of a
classified in suborders of Corynebacterium healthy microbiota (Anderson et al., 2016).
and Micrococcineae. Hence culture-based
method adopted during this study revealed Some of the obligatory aerobic bacteria were
important members of ‘‘core” bacterial adapted to highly acidic environments rich in
community present in alimentary canals of sugar. As revealed by biochemical assays,
honey bees present in apiaries located in area many of these bacteria ferment sugars to
under study. produce lactic acid and various other end
products, and several can reduce nitrate to
The phylogenetic tree of the partial 16S nitrite suggesting a potential function in
rDNA gene sequences of the bacterial nitrogen metabolism within the gut. Like
isolates from the gut of honey bees showed ants, bees also belong to hymenoptera which
relatedness among the bacteria when aligned are eusocial insects that survive in colonies
with reference strains in GenBank, which with queen and thousands of worker bees
revealed that the bacterial population in the which can forage large distances for
gut of honey bee foragers in OOU and Odo- collecting nectars and pollens and return to
Epo were diverse, including Cedeca davisae, the hive. Hence their contact with various
Cronobacter dublinensis, Enterobacter environments acts as a vector of diverse
aerogenes, Kluyvera cryocrescens, bacterial flora. More than fifty bacterial
Klebsiella oxytoca, Providencia vermicola, species from 31 genera have been found
Salmonella enteric, Providencia associated with different ants including
alcalifaciens, Serrati nematodiphila, Escherichia, Staphylococcus, Enterobacter,
Pseudomonas plecoqlossicida, Klebsiella Pseudomonas, Bacillus, Streptococcus and
michiganensis, Serratia marcenscens, Klebsiella (Emery et al., 2017). A number of
Pseudomonas aeruginosa, Escherichia coli, opportunistic pathogenic bacteria have
Aeromonas hydrophila and Enterobacter already been reported from different insects
asburiae. Klebsiella spp. which were more including phytophagus insect aster
abundant and prominent in the digestive guts leafhopper (Macrosteles quadrilineatus) in
of adult honeybees across all selected association with plants (Erban et al., 2017).
ecozones. Nectar has considered as an environmental
bacterial reservoir. An array of bacterial
The richness of these bacterial assemblages species belongs to Firmicutes and
suggests their ecological importance. For Enterobacteriaceae are reported from nectar.
instance, the abundance of one representative Different Bacillus species were frequently
of Enterobacter aerogenes was estimated at reported from the nectars of Acacia and
29% of the total microbial gut samples Mesquite (Anderson et al., 2013). Acacia
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA
132
plants (Acacia arabica, Acacia modesta and environmental bacteria in the bee guts (Tarpy
Acacia nilotica) are major bee plants in local et al., 2015). The possible routes of bacterial
flora of the study area (Guo et al., 2015). contamination in honey bee and its by-
Therefore, interaction of worker bees in the products are human, hive tools, sugar feeders,
study areas nectar from the blossom of wind and dust. Beekeepers skin infections,
Acacia flowers catalyzed the transmission of fecal contamination and sneezing can
environmental bacteria in the bee guts (Tarpy introduce pathogenic microbes into the hive
et al., 2015). The possible routes of bacterial environment.
contamination in honey bee and its by-
products are human, hive tools, sugar feeders, Hence bee guts can act as a carrier of
wind and dust. Beekeepers skin infections, opportunistic bacterial pathogens.
fecal contamination and sneezing can Additionally, due to political and economic
introduce pathogenic microbes into the hive disruption in the study area caused by the war
environment. against terrorism, most of the beekeepers
were not able to keep their bees properly.
Hence bee guts can act as a carrier of Like in Europe, a remarkable decline in the
opportunistic bacterial pathogens. bee hives was observed during the early
Additionally, due to political and economic 1990s caused by the Soviet collapse, rather
disruption in the study area caused by the war than from widespread ecological factors
against terrorism, most of the beekeepers (Zheng et al., 2017).
were not able to keep their bees properly.
Like in Europe, a remarkable decline in the CONCLUSION
bee hives was observed during the early The findings from this study showed that
1990s caused by the Soviet collapse, rather microbiota component community of A.
than from widespread ecological factors mellifera adansonii in OOU was composed
(Zheng et al., 2017). of more Gram-negative bacteria than Gram-
positive bacteria in Odo Epo. From the study,
A number of opportunistic pathogenic dominant digestive guts’ microbiota was
bacteria have already been reported from Cedeca davisae, Cronobacter dublinensis,
different insects including phytophagus Enterobacter aerogenes, Kluyvera
insect aster leafhopper (Macrosteles cryocrescens, Klebsiella oxytoca,
quadrilineatus) in association with plants Providencia vermicola, Salmonella enteric,
(Erban et al., 2017). Providencia alcalifaciens, Serratia
nematodiphila, Pseudomonas
Nectar has considered as an environmental plecoqlossicida, Klebsiella michiganensis,
bacterial reservoir. An array of bacterial Serratia marcenscens, Pseudomonas
species belongs to Firmicutes and aeruginosa, Escherichia coli, Aeromonas
Enterobacteriaceae are reported from nectar. hydrophila and Enterobacter asburiae.
Different Bacillus species were frequently Klebsiella spp. was more abundant and
reported from the nectars of Acacia and prominent in the digestive guts of adult
Mesquite (Anderson et al., 2013). Acacia honeybees across the two areas under study.
plants (Acacia arabica, Acacia modesta and These comparable differences in species
Acacia nilotica) are major bee plants in local were due to their ecological and geographical
flora of the study area (Guo et al., 2015). distribution which reflected on their
Therefore, interaction of worker bees in the microbiota diversity in relation to
study areas nectar from the blossom of geographical distribution of associated
Acacia flowers catalyzed the transmission of honeybees. Geographical locations dictate
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
Oladipupo-Alade et al., 2021 133
JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021
PHYLOGENETIC RELATIONSHIP BETWEEN THE GUT BACTERIAL FLORA OF HONEYBEE (Apis Mellifera) FROM APIARIY
IN OGUN STATE, NIGERIA
134
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JOURNAL OF RESEARCH IN FORESTRY, WILDLIFE AND ENVIRONMENT, VOLUME 13, NO. 2, JUNE, 2021