Isolation and Characterization (2021)

You might also like

Download as pdf or txt
Download as pdf or txt
You are on page 1of 11

Archives of Microbiology

https://doi.org/10.1007/s00203-021-02380-w

ORIGINAL PAPER

Isolation and characterization of halophilic bacteria with the ability


of heavy metal bioremediation and nanoparticle synthesis from Khara
salt lake in Iran
Hasan Diba1 · Reza Ahangari Cohan2 · Morteza Salimian3 · Rohallah Mirjani1 · Mohammad Soleimani1 ·
Farnaz Khodabakhsh1

Received: 20 January 2021 / Revised: 9 May 2021 / Accepted: 11 May 2021


© The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021

Abstract
Increasing environmental pollutants such as heavy metals have become one of the most severe health dangers because of
rapid industrialization. Exposure to lead and nickel heavy toxic metals can lead to hazardous diseases affecting most of the
organs in humans. Bioremediation is a process that uses the ability of microorganisms or plants to detoxify environmental
contaminants at lower costs than physicochemical techniques. This study isolated halophilic bacteria from Khara salt lake in
Iran and screened their ability to resist lead and nickel. After screening stages, three selected strains including Bacillus sp.
A21, Oceanobacillus sp. A22 and Salinicoccus A43 were identified by16S rDNA sequencing and the related sequences were
submitted to GeneBank with accession IDs MN588312, MN588313, and MN 588,314, respectively. These strains resist 7.2
mM, 4.1 mM, and 6.7 mM lead and 3.6 mM, 3.7 mM, and 4.1 mM nickel, respectively. Investigation of growth pattern and
evaluation of bioremediation ability by atomic absorption spectroscopy revealed that Bacillus sp. A21 could decrease lead
and nickel in culture medium up to 97.5% and 76%, respectively. Oceanobacillus sp. A22 showed higher lead bioremediation
rate (98.8%) and lower nickel-bioremediation rate (73.5%). Salinicoccus sp. A43 showed the least bioremediation ability
(92% lead and 71.7% nickel). The ability of selected strains to synthesize lead and nickel nanoparticles was evaluated using
UV/Vis spectrophotometry and Energy-Dispersive X-ray Spectroscopy (EDX). Particle dimensions were measured using
Scanning Electron Microscopy (SEM). Bacillus sp. A21 and Oceanobacillus sp. A22 strains were able to synthesize lead
nanoparticles; however, Salinicoccus sp. A43 could synthesize both lead and nickel nanoparticles.

Keywords Extremophile · Lead · Nickel · Bioremediation · Halophile · Nanoparticle synthesis

Introduction

Increasing environmental pollutants such as heavy metals


Communicated by Erko Stackebrandt. due to the rapid industrialization of societies have become
one of the most serious health threats. Long-term exposure
* Reza Ahangari Cohan
cohan_r@yahoo.com to heavy metals like lead and nickel cause severe disor-
ders in humans, such as immune weakness, susceptibility
* Farnaz Khodabakhsh
farnaz.khodabakhsh@ajaums.ac.ir to infections, osteoporosis, allergies, cancer, and respira-
tory failure (Yadav et al. 2017). Because heavy metals
1
Department of Genetics and Advanced Medical Technology, are not degradable, their accumulation in nature is one of
Medical Biotechnology Research Center, Faculty the environmental alarms. Therefore, transforming such
of Medicine, AJA University of Medical Sciences, Tehran,
Iran toxic heavy metals into a less dangerous state is quite nec-
2 essary. The use of microorganisms for bioremediation is
Department of Nanobiotechnology, New Technologies
Research Group, Pasteur Institute of Iran, Tehran, Iran known as the main low-cost environmental management
3 (Alvarez et al. 2017). The adsorption and removal proper-
Department of Medical Laboratory, Faculty of Paramedical
Sciences, Kashan University of Medical Sciences, Kashan, ties of heavy metals in some microorganisms depend on
Iran their ecological niches (Liu 1993). Some microorganisms

13
Vol.:(0123456789)
Archives of Microbiology

exhibit a certain tolerance to heavy metals (Gavrilescu Materials and methods


2004) and numerous experiments on different biomasses
of microorganisms have been shown that some of them Sampling
can remove heavy metals by absorbing these metals into
their bodies (Samanta et al. 2012; Mustapha and Hlimoon Samplings were performed at 52°41′22.53″ E and
2015). 32°18′11.87″ N in Khara salt lake in Iran at four levels
Extremophiles are a significant population of microor- including salt mound, soil surface, 5 cm depth, and 10 cm
ganisms that can survive and produce metabolites in hos- depth. The satellite image of sampling points is shown in
tile habitats (Asoodeh et al. 2010). Halophiles and halo- Fig. 1.
tolerants can produce saline-resistant enzymes that act in
the low-moisture areas (Bano et al. 2018). Because of their Isolation of halophilic bacteria
specific physiology, they exhibit resistance to the high con-
centration of solutes, so they appear to be able to grow at Two types of a defined medium (5 g ­L−1 Peptone, 3 g ­L−1
the high concentration of heavy metals for bioremediation Meat Extract, 50 g L­ −1 Yeast Extract, 15 g L
­ −1 Agar, and
purposes (Al-Mailem et al. 2018). Nowadays, there is an 100 g L −1
­ salt) were used to isolate the halotolerant bac-
increasing interest in the screening of extremophiles such teria. The difference in the culture media was in their salt
as halophiles with natural resistance to in situ stresses and composition. Medium D contained 81 g ­L−1 NaCl, 9.7 g
producing different nanoparticles (Diego 2018; Noram- ­L−1 ­MgSO4.7H2O, 7 g ­L−1 ­MgCl2.6H2O, 2 g L ­ −1 ­CaCl2, 60
buena 2020). Halophilic prokaryotes can tolerate and −1 −1
mg ­L ­NaHCO3, and 26 mg ­L NaBr (Amoozegar et al.
detoxify heavy metals which during the processes, metal- 2012), while Medium A contained only 100 g ­L−1 NaCl as
lic ions could convert to nanoparticles (Abdollahnia et al. salt presents in the culture medium. After dilution of the
2020). Lead nanoparticles are reported as rigid, stable, samples to ­10–1 using 0.1 M phosphate buffer (0.0754 M
and thermoelectric fusible material. Nickel nanoparticles ­Na2HPO4.7H2O, 0.0246 ­NaH2PO4.H2O, pH 7.4), 100 µL of
have important applications in catalysts, conducting and the samples was used to inoculate onto the culture media
magnetic materials. Because nickel is oxidized easily, the by speared plate technique. The culture media were incu-
synthesis of nickel nanoparticles is difficult (Wu and Chen bated up to two weeks at 35 ± 1 °C (Amoozegar et al. 2012).
2003). The appearance of colonies during the incubation time was
In this study, isolation and characterization of halotol- evaluated and colonies that showed different features were
erant bacteria were carried out from Khara salt lake in re-cultured and incubated to ensure purity by Gram stain-
Iran as a novel sampling point. After screening and phy- ing and microscopic examination. Each purified colony was
logenetic analysis, the bacteria were evaluated for lead cultured in its respective liquid culture medium and kept
and nickel resistance and their ability to bioremediation in a 15%v/v glycerol solution at −80 °C. The isolates were
of these heavy metals. Finally, the isolated bacteria were then screened for salt tolerance up to 20%w/v as previously
investigated for synthesis of lead and nickel nanoparticles. described.

Fig. 1  The satellite image of


sampling points

13
Archives of Microbiology

Resistance to heavy metals were inoculated into the culture media at the logarithmic
phase with a concentration of 0.5 McFarland. According
Bacterial resistance to heavy metals was investigated using to the growth kinetic patterns, the cells were centrifuged
Minimal Inhibitory Concentration (MIC) method in a at 3000 × g for 15 min and the supernatants were used for
defined saline medium [13] with 10% w/v salt that the bacte- residual lead and nickel determination (Amoozegar et al.
rium showed the resistance. Briefly, different concentrations 2012). Heavy metal concentrations were measured using
of lead (Sigma Aldrich, Cat. No.: 209708) and nickel (Sigma atomic absorption spectroscopy (Thermo Elemental Solaar
Aldrich, Cat. No.: 266981) with the interval of 0.5 mM were M5, UK) in the ISO 17,028 Reference Laboratory of the
added to the medium. If the bacterium was not able to grow Iranian Research Organization for Scientific and Technology
at the mentioned concentration, the interval concentration (IROST), Tehran, Iran.
was decreased to 0.1 mM. For the test, 0.5 McFarland con-
centration (1 × ­106–5 × ­106 CFU/ml) of bacterial cultures
was prepared and then inoculated into the media. The plates Nanoparticle synthesis evaluation
were then surveyed every 24 h up to two weeks.
The cell pellets were achieved by centrifugation of over-
Molecular identification night cultured media (30 mL) at 5000 × g. The pellets were
then mixed with 30 mL solution containing 1 mM lead and
The genomes of screened isolates were extracted by a bac- nickel ions and incubated at 37 °C for 72 h. After incubation,
terial genome extraction kit (MBST, Tehran, Iran). For the suspensions were centrifuged at 5000 × g and the super-
molecular identification using 16S rDNA sequencing, 27F natants were analyzed by T80 + UV/Vis (PG Instrument,
(5`-AGA​GTT​TGATCMTGG​CTC​AG-3`) and 1492R (5`- UK) at 190–500 nm and Energy-Dispersive X-ray spec-
ACG​GYT​ACC​TTG​TTA​CGA​CTT-3`) primers were used trometer (EDX) (SAMx, France). Field Emission Scanning
in Polymerase Chain Reaction (PCR) (5 min. 95 °C; 40 s. Electron Microscopy (FE-SEM) (Mira II LMU TESCAN
95 °C, 40 s. 65 °C, 1.5 min 72 °C for 30 cycles; 10 min. FE-SEM, Czech Republic) was used to measure the size of
72 °C) (Diba et al. 2018). The reaction was performed in nanoparticles.
50 µL volume with 2 Master Mix RED (Ampliqon, Odense
M, Denmark). After electrophoresis on 1.7% w/v agarose
gel, the DNA bands were purified using DNA extraction kit
(Vivantis, Selangor, Malaysia) and sequenced by Macrogen Results
company (Seoul, South Korea). The chromatograms were
evaluated by MEGA X software and the phylogenetic trees Isolation of halophilic bacteria
were generated using the comparison of the sequences via
Basic Local Alignment Search Tool (BLAST) in the EzBio- Two media with differences in salt composition were used
Cloud database (Yoon et al. 2017) and maximum-likelihood for isolation of bacteria. Four isolates were obtained from
(MLH) trees were made with 1000 bootstraps (Kumar et al. soil surface sample which two out of four were from the
2018). Finally, the sequences were submitted to the Gen- medium A that were coded as A21 and A22, and two out of
Bank database. four were from the medium D that were coded as D25 and
D26. One isolate was obtained from 5 cm depth sample from
The growth kinetics of isolated strains the medium D which was coded as D34 and one isolate was
obtained from 10 cm depth sample in the medium A which
To achieve the appropriate sampling time for evaluating was coded as A43. All isolates resisted to salt concentration
heavy metals reduction by strains, the broth defined medium up to 20% w/v (Fig. 2).
was prepared in the presence of heavy metals (with a con-
centration of 1 mM) and 10%w/v salt, then the isolates (at
0.5 McFarland concentration) were inoculated. The growth Lead‑ and nickel‑resistance measurements
kinetics of the cultured bacteria were monitored at 2 h inter-
vals for a total period of 106 h using a spectrophotometer The lead- and nickel-resistance data for the isolates are sum-
(PG Instrument, UK) at 600 nm. marized in Table 1. According to the results, isolates A21,
A22, and A43 were selected because they showed higher
Evaluation of heavy metal removal resistance to both heavy metals. The bacterium was consid-
ered resistant to the heavy metals when it can grow at con-
The broth defined medium was supplemented with 1 mM centrations above 1 mM (Rathgeber et al. 2002; Amoozegar
concentration of heavy metals and 10%w/v salt. The strains et al. 2005).

13
Archives of Microbiology

Fig. 2  The macroscopic phenotypic characteristics of isolated colonies (a) and the gram-stained images (b). 1, 2, 3, 4, 5, and 6 are A21, A22,
A43, D25, D26 and D34 isolates, respectively

Table 1  The metals resistant analysis of the isolates algorithms to a matrix of pairwise distance estimated
Isolate code Lead resistance (mM) Nickel
by the Maximum Composite Likelihood (MCL) method,
resistance and then selecting the topology with a superior log-
(mM) likelihood value. The tree is drawn to scale, with branch
lengths measured in the number of substitutions per site
A21 7.2 3.6
(Kumar et al. 2018). According to phylogenetic trees,
A22 4.1 3.7
A21, A22, and A43 isolates were identified as Bacillus
A43 6.7 4.1
sp. A21, Oceanobacillus sp. A22 and Salinicoccus sp.
D25 0.4 1.6
A43, respectively. The partial 16S rDNA sequences were
D26 0.4 1.6
submitted to GeneBank with accession IDs MN588312,
D34 1.6 0.8
MN588313, and MN 588,314, respectively.

The growth kinetics


Molecular identification
The growth kinetic analysis of microorganisms is carried out
Agarose gel electrophoresis of the PCR products showed to obtain accurate information about the growth behavior
sharp bands at 1500 bp (data not shown). Partial 16S for optimal cultivation efficiency in relevant applications.
rDNA sequencing was performed and phylogenetic trees The growth kinetics of selected strains were estimated in
were generated using EzBiocloud database (https://​www.​ broth medium A containing 1 mM lead and 1 mM nickel to
ezbio​c loud.​n et/) where only type strains are presented. achieve the appropriate sampling time for evaluating heavy
The evolutionary history was concluded by the Maximum metals reduction. The same medium without heavy metals
Likelihood method and Tamura-Nei model (Tamura and was used as control. Figure 4A–C correspond to the growth
Nei 1993). In Fig. 3, the percentage of trees in which kinetic curves of Bacillus sp. A21, Oceanobacillus sp. A22,
associated taxa clustered together is shown next to the and Salinicoccus sp. A43, respectively. The growth kinetics
branches. Initial trees for the heuristic search were done showed polynomial models. Initially, all strains showed a
automatically by applying Neighbor-Join and BioNJ logarithmic phase for 30–40 h and then entered a stationary

13
Archives of Microbiology

Fig. 3  Phylogenetic trees of A21, A22, and A43 isolates based on 16S rDNA sequence. Relationships are shown to type strains only

phase. After the first stationary phase, all strains cultured in Heavy metal removal evaluation
a medium containing heavy metals showed an increase in the
­OD600nm and then re-entered to a second stationary phase. According to the growth kinetic curves, sampling of Bacil-
Whereas, in the control medium, all isolated bacteria entered lus sp. A21 and Oceanobacillus sp. A22 was done at 30th
the death phase immediately after the first stationary phase. h of fermentation, while sampling of Salinicoccus sp. A43

13
Archives of Microbiology

Fig. 4  The growth kinetic curves of (a) Bacillus sp. A21, (b) Oceanobacillus sp. A22, and (c) Salinicoccus sp. A43 in medium A containing 1
mM heavy metals and 10% salt concentration. The same medium without heavy metals was used as control

was performed at the 40th h of fermentation. By analyz- supernatants had the potential to synthesize lead nanoparticles.
ing the concentration of heavy metals using atomic absorp- However, the absorbance values of nickel suspensions were
tion spectroscopy, it was found that lead concentration was negligible for Bacillus sp. A21 and Oceanobacillus sp. A22.
decreased as 97.5 ± 0.1%, 98.8 ± 0.2% and 92 ± 0.4% in the Surprisingly, a slight absorption was observed in the suspension
culture media containing Bacillus sp. A21, Oceanobacil- related to Salinicoccus sp. A43 (Fig. 5). Moreover, EDX analy-
lus sp. A22, and Salinicoccus sp. A43, respectively. On the sis confirmed the identity of synthesized nanoparticles (Fig. 6).
other hand, nickel concertation was decreased 76 ± 1.5%, The size of synthesized nanoparticles was further studied by
73.5 ± 1.6, and 71.7 ± 1.8 by Bacillus sp. A21, Oceanobacil- SEM. The results showed that Bacillus sp. A21 and Oceanoba-
lus sp. A22, and Salinicoccus sp. A43, respectively. cillus sp. A22 produced lead nanoparticles in the size range of
75–100 nm and 10–15 nm, respectively. Salinicoccus sp. A43
Evaluation of nanoparticles synthesis by isolated produced both lead and nickel nanoparticles in the size range
bacteria of 80–100 and 10–20 nm, respectively (Fig. 7).

Nanoparticle synthesis of cell pellets was initially studied using


UV–Vis spectrophotometry (Joglekar et al. 2011). The UV–Vis Discussion
spectrum showed that the suspensions had an adsorption peak
at 290 nm. The lead suspension absorbances were 0.1, 0.62, Industrialization of societies causes human exposure to
and 0.37 for Salinicoccus sp. A43, Oceanobacillus sp. A22, and heavy metals, such as lead and nickel (Yadav et al. 2017).
Bacillus sp. A21, respectively. These results indicated that all Bioremediation using microorganisms, especially bacteria,

13
Archives of Microbiology

Fig. 5  The absorption spectra of suspensions containing cell pellets with metals. (a) Bacillus sp. A21, (b) Oceanobacillus sp. A22, and (c) Salin-
icoccus sp. A43 related to lead nanoparticles synthesis and (d) Salinicoccus sp. A43 related to nickel nanoparticle synthesis

is one of the most useful methods for removing these kinds 10–20% w/v salt reduced 84.79% and 91.27% of the lead
of contaminants because of their ability to grow under con- after 48 h and 96 h, respectively (Asksonthong et al. 2016).
trolled conditions (Khodabakhsh et al. 2011; Alvarez et al. Dabir et al. (2019) isolated 64 different bacterial strains
2017). Halophiles or halotolerant bacteria due to their spe- from the soil samples of coal, salt, and aluminum mining
cific physiology can grow in high concentrations of heavy industries. After molecular identification, Microbacterium
metals for bioremediation purposes (Al-Mailem et al. 2018). oxydans CM3, and Rhodococcus sp. AM1 could absorb 58%
The physicochemical and structural characteristics of dif- and 39% of the lead after 72 h of incubation, respectively
ferent soil horizons provide various niches with the diver- (Dabir et al. 2019). In the current research, we isolated 6
sity of microorganism populations. Therefore, the diversity, bacterial strains from Khara salt lake as a novel sampling
abundance, and activity of bacterial communities are struc- site from the salt mound, soil surface, 5 cm depth, and 10
tured with soil depth (Griffiths et al. 2003). Amoozegar et al. cm depth that could grow up to 20% w/v salt-containing
(2012) isolated 24 bacterial strains from saline areas of Iran media. Among the isolates, three strains showed good resist-
and surveyed their heavy metals absorption ability. Among ance to lead and nickel heavy metals. The isolated bacteria
the strains, Halomonas sp. showed the ability to grow in the molecularly identified via 16S rDNA sequencing as Bacillus
presence of 5 mM lead that could decrease 90% of metal sp. A21, Oceanobacillus sp. A22, and Salinicoccus sp. A43.
in 5% w/v salt concentration at 35 °C (Amoozegar et al. Bacillus sp. A21, Oceanobacillus sp. A22 and Salinicoccus
2012). Banmark and Fardeau (2016) isolated Micrococcus sp. A43 were resistant to 7.2, 4.1, and 6.7 mM of lead and
sp. from industrial wastewater, which showed the strain 3.6, 3.7, and 4.1 mM of nickel at 10% w/v salt concentra-
could decrease 80.9% of nickel and 91.06% of lead (Ben- tion, respectively. Bacillus and Oceanobacillus are genera
malek and Fardeau 2016). Asksonthong et al. (2016) cul- that are related to the Bacillaceae family, Bacillales order,
tured Halomonas elongate and Tetragenococcus halophilus Bacilli class, and Firmicutes phylum of bacteria (Logan and
at high salt concentrations and evaluated the ability of lead Vos 2018). Salinicoccus is related to a different family called
bioremediation. These bacteria in a culture medium with Staphylococcaceae in the Bacillaceae family (Ventosa 2015).

13
Archives of Microbiology

Fig. 6  EDX spectra of synthesized nanoparticles. a Lead nanoparti- Salinicoccus sp. A43 and (d) Nickel nanoparticles produced by Salin-
cles produced by Bacillus sp. A21, (b) Lead nanoparticles produced icoccus sp. A43
by Oceanobacillus sp. A22, (c) Lead nanoparticles produced by

The Halomonas spp. that Amoozegar et al. (Amoozegar This may be due to the reduction or depletion of some easily
et al. 2012) and Asksonthong et al. (2016) (Asksonthong accessible nutrients in the culture media, which forces the
et al. 2016) had isolated are related to proteobacteria phylum bacteria to use other nutrients by changing the metabolic
(Vreeland 2015). Micrococcus sp. that was isolated by Ban- pathways. Results indicated that Bacillus sp. A21 reduced
mark and Fardeau (2016) (Benmalek and Fardeau 2016), as 97.5 ± 0.1% and 76 ± 1.5% of lead and nickel after 30 h of
well, Microbacterium oxydans CM3 and Rhodococcus sp. fermentation. Oceanobacillus sp. A22 reduced 98.8% and
AM1 that were isolated by Dabir et al. (2019) (Dabir et al. 73.5% ± 1.6% of lead and nickel after 30 h of fermentation.
2019) are related to Actinobacteria phylum (Jones 2015). Salinicoccus sp. A43 reduced 92% ± 0.4% and 71.7 ± 1.8%
Tetragenococcus halophilus that was isolated by Askson- of lead and nickel after 40 h of fermentation, respectively.
thong et al. (2016) (Asksonthong, Siripongvutikorn et al. The bioremediation capacity of species Halomonas elongate
2016) is related to the Lactobacillales family (Dicks et al. and Tetragenococcus halophilus that were evaluated by Ask-
2015). Our isolates with different taxonomical classification sonthong et al. (2016) at 10 w/v% salts, showed maximum
are just common in phylum with Tetragenococcus halophilus reduction at 48 h (Asksonthong et al. 2016) and Microbac-
that was isolated by Asksonthong et al. (2016) (Askson- terium oxydans CM3 and Rhodococcus sp. AM1 showed
thong et al. 2016). Evaluation of growth kinetics of isolates maximum reduction at 72 h of fermentation (Dabir et al.
in broth media showed a bi-phasic pattern for all samples. 2019). The relatively short removal time indicates the high

13
Archives of Microbiology

Fig. 7  SEM images of synthesized nanoparticles. a Lead nanopar- by Salinicoccus sp. A43, and (d) Nickel nanoparticles produced by
ticles produced by Bacillus sp. A21, (b) Lead nanoparticles pro- Salinicoccus sp. A43
duced by Oceanobacillus sp. A22, (c) Lead nanoparticles produced

efficiency of our isolates in the removal of lead and nickel. synthesis by the bacterial pellets was initially studied using
Because, one of the major problems in the removal of heavy UV–Vis spectrophotometry that had a peak at 290 nm.
metals from the environment is the duration of the process, Results indicated that Bacillus sp. A21, Oceanobacillus sp.
which may take a long time (Masindi and Muedi 2017). A22 and Salinicoccus sp. A43 had the potential to synthesize
Our results indicated that the introduced strains have the lead nanoparticles. EDX analysis confirmed the identity of
potential ability to rapidly decreasing lead and nickel heavy synthesized lead nanoparticles. SEM analysis showed that
metals from polluted environments. Ramadan et al. (2017) Bacillus sp. A21, Oceanobacillus sp. A22, and Salinico-
isolated Serratia plymuthica from a wastewater plant and ccus sp. A43 produced lead nanoparticles in a size range
evaluated the nanoparticle synthesis potency from it. This of 75–100 nm, 10–15 nm, and 80–100 nm, respectively.
bacterium resisted 8 mM lead and could biosynthesize lead None of our isolates were common in taxonomic properties
nanoparticles. UV–Vis spectroscopy showed a peak at 330 with Serratia plymuthica which is a species related to the
nm. EDS results showed the ability of Serratia plymuthica Enterobacteriaceae family, Enterobacteriales order, Gamma-
to biosynthesis lead nanoparticles. The size of nanoparticles proteobacteria class, and Proteobacteria phylum (Grimont
was 93 nm determined by Dynamic Light Scanning (DLS) and D. 2015). Surprisingly, one of our isolates, Salinicoccus
(Ramadan et al. 2017). In our research, the nanoparticle sp. A43 could produce nickel nanoparticles in the size range

13
Archives of Microbiology

of 10–20 nm. Although some researches have been done on Al-Mailem DM, Eliyas M, Radwan SS (2018) Ferric sulfate and pro-
the possibility of producing nickel nanoparticles from plant line enhance heavy-metal tolerance of halophilic/halotolerant soil
microorganisms and their bioremediation potential for spilled-oil
species (Bibi et al. 2017; Kichekar et al. 2018; Lingaraju under multiple stresses. Front Microbiol 9:394
et al. 2020), no report was found so far on the production of Alvarez A, Saez JM, Costa JSD, Colin VL, Fuentes MS, Cuozzo SA,
nickel nanoparticles from halophilic bacteria. Benimeli CS, Polti MA (2017) Actinobacteria: Current research
and perspectives for bioremediation of pesticides and heavy met-
als. Chemosphere 106:41–62
Amoozegar M, Hamedi J, Dadashipour M, Shariatpanahi S (2005)
Effect of salinity on the tolerance to toxic metals and oxyanions
Conclusion in native moderately halophilic spore-forming bacilli. World J
Microbiol Biotechnol 21(6–7):1237–1243
In the current study, three novel bacteria were isolated from Amoozegar MA, Ghazanfari N, Didari M (2012) Lead and Cadmium
Khara salt lake that showed resistance to lead and nickel Bioremoval by Halomonas sp., an exopolysaccharide-producing
halophilic bacterium. Prog Biol Sci 2:1–11
heavy meals. Among these species, Bacillus sp. A21 and Asksonthong R, Siripongvutikorn S, Usawakesmanee W (2016) Evalu-
Oceanobacillus sp. A22 can synthesize lead nanopar- ation of harmful heavy metal (Hg, Pb and Cd) reduction using
ticles and Salinicoccus sp. A43 can synthesize both lead Halomonas elongata and Tetragenococcus halophilus for protein
and nickel nanoparticles. By further studies on the biore- hydrolysate product. Funct Foods Health Disease 6:95–205
Asoodeh A, Chamani J, Lagzian M (2010) A novel thermostable,
mediation mechanisms, these bacteria can use for lead and acidophilic α-amylase from a new thermophilic “Bacillus sp.
nickel bioremediations in polluted locations to decrease the Ferdowsicous” isolated from Ferdows hot mineral spring in Iran:
exposure of human populations to these toxic heavy met- purification and biochemical characterization. Int J Biol Macro-
als. Moreover, the isolated bacteria could be employed in mol 46(3):289–297
Bano A, Hussain J, Akbar A, Mehmood K, Anwar M, Hasni MS, Ullah
the production of lead and nickel nanoparticles that have a S, Sajid S, Ali I (2018) Biosorption of heavy metals by obligate
variety of applications in the industry. halophilic fungi. Chemosphere 199:218–222
Benmalek Y, Fardeau ML (2016) Isolation and characterization of
Acknowledgements The authors wish to express their deep gratitude metal-resistant bacterial strain from wastewater and evaluation
to all who provided support during this research. of its capacity in metal-ions removal using living and dry bacterial
cells. Int J Environ Sci Technol 13:2153–2162
Authors’ contributions FK and RAC designed the study, HD performed Bibi I, Kamal S, Ahmed A, Iqbal M, Nouren S, Jilani K, Nazar N,
the experiments. HD, FK, and RAC drafted the manuscript. FK, RAC, Amir M, Abbas A, Ata F, Mijid F (2017) Nickel nanoparticle
MS, RM, and MS analyzed the data. All authors read and approved synthesis using Camellia Sinensis as reducing and capping agent:
the final manuscript. growth mechanism and photo-catalytic activity evaluation. Int J
Biol Macromol 103:783–790
Dabir A, Heidari P, Ghorbani H, Ebrahimi A (2019) Cadmium and lead
Funding Not applicable. removal by new bacterial isolates from coal and aluminum mines.
Int J Environ Sci Technol 16(12):8297–8304
Data availability All isolated bacteria were deposited in Iranian Bio- Diba H, Hemmat J, Vaez M, Amoozegar MA (2018) Screening of
logical Resource Center. bacteria producing acid-stable and thermostable Endo-1, 4-β Glu-
canase from hot springs in the North and Northwest of Iran. Adv
Code availability Not applicable. Res Microbial Metab Technol 1:23–30
Dicks LMT, Holzapfel WH, Satomi M, Kimura B, Fujii T (2015) Ber-
gey’s manual of systematics of archaea and bacteria. Wiley online
Declarations library
Diego KDGS (2018) Biosynthesis of gold Nannoparticles by Bacteria
Conflict of interest The authors announce there is no conflict of inter- from hyperalkaline spring and evaluation of their inhibitory activ-
est. ity against pycicyanin production. J Microbiol Biotechnol Food
Sci 8:781–787
Ethics approval Not applicable. Gavrilescu M (2004) Removal of heavy metals from the environment
by biosorption. Eng Life Sci 4:219–232
Consent to participate Not applicable. Griffiths RI, Whiteley AS, O’Donnel AG, Bailey MJ (2003) Influence
of depth and sampling time on bacterial community structure in
Consent for publication All authors reviewed and approved the final an upland grassland soil. FEMS Microbiol Ecol 43:35–43
version of manuscript. Grimont, F. and G. P. A. D (2015) Bergey’s manual of systematics of
archaea and bacteria. Wiley online library
Joglekar S, Kodam K, Dhaygude M, Hudlikar M (2011) Novel route
for rapid biosynthesis of lead nanoparticles using aqueous extract
of Jatropha curcas L. latex. Mater Lett 65:3170–3172
References Jones AL (2015) Bergey’s manual of systematics of archaea and bac-
teria. Wiley online library
Abdollahnia M, Makhdoumi A, Mashreghi M, Eshghi H (2020) Khodabakhsh F, Nazeri S, Amoozegar MA, Khodakaramian G (2011)
Exploring the potentials of halophilic prokaryotes from a solar Isolation of a moderately halophilic bacterium resistant to some
saltern for synthesizing nanoparticles: the case of silver and sele- toxic metals from Aran and Bidgol Salt Lake and its phylogenetic
nium. PLoS ONE 15:e0229886

13
Archives of Microbiology

characterization by 16S rDNA gene. Feyz J Kashan Univ Med hydrothermal vents of the Juan de Fuca Ridge in the Pacific
Sci 15(1) Ocean. Appl Environ Microbiol 68(9):4613–4622
Kichekar SR, Dhage PM, Gaikwad B, Aher HR, Han SH (2018) Bio- Samanta A, Bera P, Khatun M, Sinha C, Pal P, Lalee A, Mandal A
synthesis and characterization of Nickel Nanoparticle Using Oci- (2012) An investigation on heavy metal tolerance and antibiotic
mum sanctum (Tulsi) Leaf Extract. Chem Sci Trans 7:696–702 resistance properties of bacterial strain Bacillus sp. isolated from
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: municipal waste. J Microbiol Biotechnol Res 1:178–189
molecular evolutionary genetics analysis across computing plat- Tamura K, Nei M (1993) Estimation of the number of nucleotide sub-
forms. Mol Biol Evol 35:1547 stitutions in the control region of mitochondrial DNA in humans
Lingaraju K, Niaka HR, Nagabhushana H, Jayanna K, Devaraja S, and chimpanzees. Mol Biol Evol 10:512–526
Nagaraju G (2020) Biosynthesis of nickel oxide nanoparticles Ventosa A (2015) Bergey’s manual of systematics of archaea and bac-
from Euphorbia heterophylla (L.) and their biological applica- teria. Willy online library
tion. Arab J Chem 13:4712–4719 Vreeland RH (2015) Bergey’s manual of systematics of archaea and
Liu S, Suflita JM (1993) Ecology and evolution of microbial popula- bacteria. Wiley online library
tions for bioremediation. Trends Biotechnol 11:344–352 Wu SH, Chen DH (2003) Synthesis and characterization of nickel
Logan NA, Vos PD (2018) Bacillus. Wiley online library nanoparticles by hydrazine reduction in ethylene glycol. J Col-
Masindi V, Muedi KL (2017) Environmental contamination by heavy loid Interface Sci 259:282–286
metals. IntechOpen Yadav KK, Gupta N, Kumar V, Singh JK (2017) Bioremediation of
Mustapha U, Hlimoon N (2015) Microorganisms and biosorption of heavy metals from contaminated sites using potential species: a
heavy metals in the environment: a review paper. J Microb Bio- review. Int J Environ Pollut 37:65–84
chem Technol 7:5 Yoon, S-H, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J (2017)
Norambuena J (2020) Mechanism of resistance focusing on copper, Introducing EzBioCloud: a taxonomically united database of 16S
mercury and arsenic in extremophilic organisms, how acidophiles rRNA gene sequences and whole-genome assemblies.Int J Syst
and thermophiles cope with these metals physiological and bio- Evol Microbiol 67:1613–1617
technological aspects of extremophiles. Elsevier, pp 23–37
Ramadan OA, Sabty AA, Kesht AT, Amer AA (2017) Biosynthesis and Publisher’s Note Springer Nature remains neutral with regard to
characterization of lead sulfide nanoparticles using wastewater jurisdictional claims in published maps and institutional affiliations.
bacteria. Biochemestry Letters 13:64–84
Rathgeber C, Yurkova N, Stackebrandt E, Beatty JT, Yurkov V
(2002) Isolation of tellurite-and selenite-resistant bacteria from

13

You might also like