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(Biolec) Enzymes and Carbohydrates
(Biolec) Enzymes and Carbohydrates
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SYSTEMATIC NOMENCLATURE OF ENZYMES
Oxidases Oxidation of substrate
- Developed by International Union of ➢ ↓ H atoms, ↑ O atoms
Biochemistry and Molecular Biology (IUBMB)
- Enzymes are subdivided into 6 molecular Reductases Reduction of substrate
classes ➢ ↓ O atoms, ↑ H atoms
- Gets more specific per number
EXAMPLE: Dehydrogenases Removal of 2 H atoms from
substrate introduces a
EC 2.7.3.2 double bond to the product,
SYMBOL MEANING H atoms being accepted by
coenzyme
EC Enzyme Comission
2 Molecular subdivision; 2
means transferases
1 Oxidoreductases Oxidation-reductions
2
Synthetases Formation of new bond
between 2 substrates with
participation of ATP
❖ FISCHER MECHANISM
ISOMERASES
- Known as the Lock and Key Model
SELECTED REACTION CATALYZED - Substrate is fixed in shape to the active
SUBCLASSES site before binding
➢ V0 : initial velocity
➢ Vmax : highest maximum velocity
➢ S: substrate
➢ Km: Michaelis-Menten Equation
- Km= ½ Vmax
➢ When reactants undergo a reaction, it - Small Km: enzyme has high affinity for
needs to cross over the middle part substrate
(peak) before it becomes a product - Large Km: enzyme has low affinity for
➢ If the energy peak is low, then the substrate
reactants will be converted into products ➢ [] : concentration in molarity
faster LINWEAVER-BURK PLOT
➢ If the reactant peak is low and the - double -reciprocal plot
energy peak is significantly higher, - Used to calculate Km and Vmax
the reactants will not be converted into - Determine the mechanism of action of enzyme
products or there will be fewer inhibitors
reactants converted - Inhibitor can be identified with the graph that
was used
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- the competitive inhibitor will bind to the active
site of the enzyme
- Leading to the formation of enzyme inhibitor
complex
- There is no product
- A competitive inhibitor has a part that is
identical to the substrate
➢ This ensures that the active site will
bind to the inhibitor since it has the
same part as the substrate
➢ Intercept on the y-axis: 1/Vmax ➢ The inhibitor will not just bind anywhere
➢ Intercept on the x-axis: -1/Km else
➢ X-axis: 1/[S] - The inhibitor will compete against the
➢ Y-axis:1/Vo substrate for the active site of the enzyme
ENZYME INHIBITION
❖ ENZYME INHIBITOR
- Substance that slows down or stops
the normal catalytic function of an
enzyme by binding to it
➢ There is a structure that
attaches to the enzyme at
some point
❖ MODES OF INHIBITION
- Irreversible MODES OF INHIBITION: REVERSIBLE
- Reversible NONCOMPETITIVE
➢ Competitive
➢ Noncompetitive
➢ Uncompetitive
MODES OF INHIBITION: IRREVERSIBLE
- Inactivates enzymes by forming a covalent
bond with the active site
➢ Covalent bonds share electrons
forming a very strong bond - The substrate is free to bind with the active site
- The structure is not similar to the enzyme’s - The inhibitor will not fight with the substrate for
substrate a place in the active site
MODES OF INHIBITION: REVERSIBLE ➢ It will bind to locations other than the
- May or may not alter conformation of the active site
enzymes - Produces the enzyme substrate inhibitor
- Alters enzyme activities complex
- It is not permanent - The inhibitor can bind even if there is an
- Can be disrupted by the following factors existing substrate already
➢ Presence of excess substrates - Will not produce a product
➢ Presence of substrates with higher - The shape of the active site will change as the
affinity for the enzyme inhibitor binds with the enzyme
MODES OF INHIBITION: REVERSIBLE COMPETITIVE ➢ Causing the substrate not being able to
fit in the active site
➢ Producing no product or no catalytic
process
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- Suffix -ose denotes that a compound is a
carbohydrate
CLASSIFICATION OF CARBOHYDRATES
CATEGORY DESCRIPTION
CARBOHYDRATES
- Hydrate of carbon
➢ water
- Molecular formula of carbohydrates CLASSIFICATION: FUNCTIONAL GROUPS
➢ CnH2nOn
➢ Cn(H2O)n ALDOSE KETOSE
- Refers to the following:
Contains an aldehyde Contains a ketone group
➢ Polyhydroxy aldehydes
group
➔ There is an OH
➢ Polyhydroxy ketones
➢ Compounds that can be hydrolyzed to # OF BONDS PER ELEMENT
them
➔ HYDROLYZED: broken down ELEMENT # OF BOND
into a simpler compound
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Carbon 4
Oxygen 2
Hydrogen 1
4NUMBERING
- The most oxidized end of the molecule
has the lowest number
➢ Double-bond
- They exist in two forms that are referred to as
enantiomers
➢ Mirror image of one another
➢ D/L enantiomers
➢ The d-enantiomers dominate here in
carbohydrates
❖ D AND L MONOSACCHARIDES
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- In drawing the other enantiomer, it
should be looked at as if it is a mirror
image
➢ Mirror image but not
superimposable
- The first carbon and the last carbon
will remain the same
- Glucose and all the other naturally
occurring sugars are d-enantiomers
STEREOISOMERS ❖ ANOMER
- Same molecular formula - Hemiacetal or hemiketals which differ
➢ Same number of carbon, hydrogen, only in configuration at C1
and oxygen atoms ➢ C1 is the asymmetric center or
❖ ENANTIOMERS the anomeric carbon
- The consequence of a chiral carbon ➢ HEMIACETAL- from an
➢ The carbohydrate exists in two aldehyde
forms ➢ HEMIKETAL- from a ketone
- Mirror images of each other - Its asymmetry is a consequence of
- They are nonsuperimposable mutarotation
- There is an imaginary mirror in front ➢ The hydroxyl group will have a
of the two structures different location
➔ Up, down, equator
❖ DIASTEREOMERS
- The structures are not mirror images
of each other CYCLIC FORMATION OF CARBOHYDRATE
- Even if there is one molecule that did - All OH groups to the right of the formula will
not correspond to the other, it is already appear in the bottom of the ring
considered a diastereomer - Left OH groups will appear above the ring
❖ EPIMERS - The rotation of the formula will be
- 2 sugars that differ in configuration counterclockwise
around 1 specific carbon atom - The last oxygen will bind to the first carbon
- Not mirror images and the hydrogen will bind to the oxygen of the
- Almost the same structures but differ in first carbon
one carbon chain ➢ The double bond between carbon and
➢ The positions of the hydrogen oxygen will disappear
and hydroxyl group are flipped - The hydroxyl may stay below or up
horizontally α-stereoisomer β-stereoisomer
❖ REDUCTION
CONFIRMATION - Increased number of hydrogen atoms
- Sodium Borohydride (NaBH4) is used
SIX-MEMBERED RING C-chair, B-boat, S-skew as a reagent
or twist boat - produce s sugar alcohol (alditol)
➢ 1° alcohol
FIVE-MEMBERED RING E-envelope, T-twist - Concerns the C-1 only
- Carbohydrates adapt the chair structure more SUGAR SUGAR ALCOHOL
➢ Due to the issue of stability
➢ Boat structure is less stable than the Glucose Sorbitol
chair structure
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Galactose Galactitol
Mannose Mannitol
DISACCHARIDES
- 2 specific sugar monomers involved and their
configurations
EXAMPLES:
DERIVATIVES: AMINO SUGAR FORMATION ➢ SUCROSE: d-glucose and d-fructose
- Amino sugar as the product ➢ MALTOSE: d-glucose
➢ Existence of an amine group - The order of the 2 monomer units is necessary
- Most monosaccharides can acquire an amine if they are different kinds
group at C-2 EXAMPLE:
➢ Acquired amine group can be acetylated ➢ LACTOSE: d-galactose + d-glucose
to form N-acetyl derivatives - The anomeric configuration of the hydroxyl
groups of each monosaccharide is different
- Joined by a glycosidic bond
- The carbons involved with the linkage is
indicated
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EXAMPLES:
Monosaccharide Units α-D-Glucose and
➢ SUCROSE: 1→2
β-D-fructose
➢ TREHALOSE: 1→1
➢ LACTOSE: 1→4 Glycosidic Linkage 1→2
DISACCHARIDES: STRUCTURE NOMENCLATURE
- Written starting with the nonreducing sugar - Also known as the table sugar
end at the left - Only 1 form exists in either solid state or
- Anomeric and enantionmeric forms are solution
designated by prefixes - Undergo hydrolysis
➢ ANOMERIC: α and β ➢ Through sucrase (body system) or
➢ ENANTIOMERIC: d and l enantiomers acidic condition (laboratory)
EXAMPLE: - Non-reducing sugar
➢ α-D-Glucopyranosyl-(1→4)-β-D-glucopy ➢ Negative in the Tolen’s, Benedict’s and
ranose Fehling’s
➢ The anomeric part in the first
monosaccharide cannot bond because
it used for the glycosidic bond
GLUCOSE: INVERSION
- The change in the direction of rotation of the
plane-polarized light
- Catalyzed by invertase
➢ The glycosidic bond will be broken
down for the component parts of
- The atoms between the glycosidic bonds sucrose to be released
formed are indicated by numbers in - Polarimeter will be used in the laboratory to
parentheses distinguish the polarization
DISACCHARIDE FORMATION
- Monosacchardies with different numbers of DIRECTION IN POLARIMETER
rings can join together
SUCROSE Clockwise
- One water molecule will be one of the products
of this reaction INVERT SUGAR Counterclockwise
- The main product is the formation of
disaccharides
MALTOSE
SUCROSE
α-D-Glucopyranosyl-(1→4)-D-glucose
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➢ Positive in the Tolen’s, Benedict’s, and - Undergo hydrolysis
Fehling’s ➢ Through cellobiase (system) or aidic
- Undergoes mutarotation condition (laboratory)
➢ Inversion POLYSACCHARIDES
- Undergoes hydrolysis - Contain many monosaccharide units bonded
➢ Through sucrase (body system) or to each other by glycosidic linkages
acidic condition (laboratory) - Not sweet
LACTOSE - Yields negative results in Tolen’s and
Bendict’s solutions
- Have limited water solubility
- OH groups present can individually become
hydrated by water molecules
β-D-galactopyranosyl-(1→4)-D-glucose
Monosaccharide Units α-D-Glucose and
β-D-galactose
STORAGE POLYSACCHARIDES
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- FUNCTIONS:
DEGREE OF None (linear)
BRANCHING ➢ Structural component of plant
cell walls
GLYCOSIDIC α(1→4) ➔ Cotton: 95% cellulose
BOND ➔ Wood: 50% cellulose
➢ Source of nutrition
AMOUNT 15-20% of starch is in ➢ As a dietary fiber
this form
➢ Has a role in weight control
- Homopolysaccharide
AMYLOPECTIN ➢ Repeating monosaccharide:
glucose
STRUCTURE Spiral-like - Glycosidic linkage: β(1→4)
- Linear structure
LENGTH OF 100,000 monomer units - 5000 monomer units in length
POLYMER CHAIN
- Unbranched
DEGREE OF A branch occurs once - Molecular mass: 900,000 amu
BRANCHING every 25-30 glucose ❖ CHITIN
units - Gives rigidity to the exoskeletons of
crustaceans, insects, other arthropods
GLYCOSIDIC α(1→4) and α(1→6)** - Cells walls of fungi
BOND - Homopolysaccharide
**α(1→4) is used as a glycosidic
linkage but α(1→6) is used to ➢ Repeating monosaccharide:
branch out N-acetyl-α-D-glucosamine
- Glycosidic linkage: β(1→4)
AMOUNT 80-85% of starch is in - Linear in structure
this form
ACIDIC POLYSACCHARIDES
❖ GLYCOGEN
- Homopolysaccharide
STRUCTURAL POLYSACCHARIDES
➢ Repeating monosaccharide:
glucose FUNCTION Involved in a variety of
- Glycosidic linkage: α(1→4) and celular functions and
α(1→6) tissues
➢ α(1→4) is used as the
glycosidic linkage EXAMPLES Hyaluronic acid, heparin
➢ α(1→6) is used for branching - Presence of COOH makes it acidic
- Length goes up to 1,000,000 monomer ❖ HYALURONIC ACID
units - Heteropolysaccharide
- A branch occurs about once every 8-12 ➢ More than 1 monosaccharides
glucose units in a repeating unit
- Repeating units:
➢ N-acetyl-β-D-glucosamine
STRUCTURAL POLYSACCHARIDES ➢ d-GLUCURONIC ACID
- Glycosidic linkage: alternates between β(1→3)
and β(1→4)
STRUCTURAL POLYSACCHARIDES
- Approximately 50,000 disaccharide units per
FUNCTION Structural element in cain
plant cell walls. - Unbranched
Exoskeletons in animals FUNCTIONS:
➢ Lubricants in the fluid of joints
EXAMPLES Cellulose, chitin
➢ Jelly-like consistency of the vitreous
❖ CELLULOSE humor of the eye
- Water-insoluble ❖ HEPARIN
- Fibrous - Heteropolysaccharide
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- Repeating monosaccharide:
➢ D-guluronate-2-sulfate
➢ N-sulfo-Dglucosamine-6-sulfate
- Glycosidic linkage: α(1→4)
- Approximately 15-90 disaccharide units
per chain
- Unbranched
- FUNCTION: anticoagulant
DIETARY CONSIDERATIONS
SIMPLE COMPLEX
CARBOHYDRATE CARBOHYDRATE
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