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Biology The Essentials 2nd Edition Mariëlle Hoefnagels


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CHAPTER 6

DNA: The Molecule of Life

Learning Outcomes
In this chapter students will:
6.1 Describe the structure of the DNA molecule and how this structure allows for the
storage of information, the replication of DNA, and protein synthesis.
(Modules 6.1, 6.2)
6.2 List the similarities and differences between the various nucleic acid molecules.
(Modules 6.3, 6.6)
6.3 Describe the process of protein synthesis, including how the genetic information is
transferred during transcription and translation. (Modules 6.3–6.7)
6.4 Define gene expression, and describe the various ways in which cells are able to
regulate gene expression, including signal transduction. (Modules 6.8, 6.9)
6.5 Differentiate between the categories of mutations and the relative effects of each on the
expression of genes. (Modules 6.10–6.12)
6.6 Describe how certain mutations can result in cancer, and what can be done to treat
cancer or prevent it. (Module 6.12)
6.7 Describe how scientists manipulate DNA to produce genetically modified products.
(Modules 6.13–6.15)
6.8 Describe how scientists can analyze DNA profiles and how this information is applied.
(Modules 6.16–6.18)
6.9 Summarize the practice of gene therapy: what it is, how it works, its successes, and its
failures. (Module 6.19)

Module Outlines
6.1 DNA is a polymer of nucleotides.
• CORE IDEA: A molecule of DNA is a double helix made of two intertwined
polynucleotide strands. Each strand is a long string of nucleotides. Each nucleotide
consists of the same sugar and phosphate, and one of four possible bases.
A. DNA history
1. In the early 1900s, biologists hypothesized a molecule acted as a chemical basis of
inheritance.
2. By the 1950s, scientists had identified the hereditary material as DNA
(deoxyribonucleic acid) and its 3-D structure.
3. DNA is one type of nucleic acid.
B. The double helix
1. Every living cell contains chromosomes.
a. Humans have 46 chromosomes.
2. Each chromosome consists of one molecule of DNA plus organizing proteins.
3. Overall structure of DNA is a double helix.
a. Two strands wrap around each other.

Copyright © 2017 Pearson Education, Inc. 75


b. Hydrogen bonds between bases hold the two strands together.
4. The precise chemical structure of DNA is common to all life on Earth.
C. Nucleotides
1. Each molecule of DNA is made of individual subunits called nucleotides.
2. Each nucleotide is composed of the following:
a. A five-carbon sugar (deoxyribose in DNA)
i. Identical in all organisms
b. A negatively charged phosphate group
i. Identical in all organisms
c. A base
i. Varies—adenine (A), guanine (G), thymine (T), and cytosine (C)
ii. All genetic information is encoded in this four-letter alphabet.
3. Polynucleotide
a. One molecule of DNA contains two polynucleotides wrapped around each other.
i. This forms a double helix.
b. Each polynucleotide is a strand of individual nucleotides.
c. Any combination of the four bases is possible along its length.
4. Sugar-phosphate backbone
a. A polynucleotide consists of bases attached to a sugar-phosphate backbone.
b. The backbone alternates sugar and phosphate groups that form a long chain.
c. The backbone is identical among all DNA molecules.
i. It is the bases that change from one molecule to the next.
5. Base pairs
a. Each nucleotide contains one of four bases.
i. Adenine (A), guanine (G), thymine (T), and cytosine (C)
b. Each kind of base can form only hydrogen bonds with only one other kind of base.
i. A with T
ii. G with C
c. The hydrogen bonds within base pairs hold the two strands of the double helix
together.
d. Due to the base-pairing rules, the sequence of one strand dictates the identity of the
nucleotides on the other strand.
6.2 During DNA replication, a cell duplicates its chromosomes.
• CORE IDEA: Genetic instructions are passed down via DNA replication: The double
helix of a DNA molecule is peeled apart, and each separated strand serves as a template
to build a new strand following the base-pairing rules.
A. Duplicating DNA
1. For the continuity of life, a complete set of genetic instructions in the form of DNA
must pass from one generation to the next.
B. Semi-conservative replication
1. During DNA replication, the two strands of the original DNA molecule separate.
2. Each DNA strand serves as a template to guide the production of the other strand.
a. Base-pairing rules dictate that A can pair only with T, and G can pair only with C.
3. In the end, two new DNA molecules are produced.
a. Semi-conservative—each contains one newly created strand and one strand from
the original molecule.
C. The process of DNA replication
1. The double helix is peeled apart.
a. Helicase attaches to the origins of replication in the DNA.

76 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
b. Helicase peels apart the two DNA strands and forms replication bubble.
c. This exposes the bases.
2. New strands are synthesized.
a. DNA polymerase builds a new DNA molecule that is complementary to the
existing strand.
b. Base-pairing rules dictate that A can pair only with T, and G can pair only with C.
c. This happens on both original DNA strands simultaneously.
3. DNA fragments are fused together.
a. DNA polymerase creates the new DNA molecule in fragments.
b. DNA ligase joins individual fragments of DNA.
6.3 DNA directs the production of proteins via RNA.
• CORE IDEA: DNA and RNA are both nucleic acids with some common features and
some differences. Within a cell, DNA acts as the molecule of heredity by directing the
production of RNA, which in turn directs the production of proteins.
A. Nucleic acids
1. A molecule of DNA (deoxyribonucleic acid) shares many structural similarities with
a molecule of RNA (ribonucleic acid).
a. Both are nucleic acids.
b. Both are polymers of nucleotides.
i. Each nucleotide consists of a sugar, a phosphate, and a base.
2. DNA and RNA have three important structural differences.
a. Number of strands
i. DNA—double-stranded (double helix)
ii. RNA—single-stranded
b. Sugar
i. DNA—deoxyribose (missing one oxygen compared to ribose)
ii. RNA—ribose
c. Base
i. DNA—adenine (A), guanine (G), thymine (T), and cytosine (C)
ii. RNA—adenine (A), guanine (G), and cytosine (C), but uracil (U) instead of
thymine (T)
B. The flow of genetic information
1. DNA is the molecule of heredity because it directs the production of proteins.
2. DNA first directs the production of RNA.
3. RNA then controls the manufacture of proteins.
4. Proteins perform the majority of cellular functions.
a. Proteins are responsible directly or indirectly for physical traits.
6.4 Genetic information flows from DNA to RNA to protein.
• CORE IDEA: Genetic information flows from DNA to messenger RNA in the nucleus
through the process of transcription. At the ribosomes in the cytoplasm, each mRNA
codon is translated into an amino acid of a protein.
A. Every trait you were born with is encoded by the DNA of your genes.
1. DNA itself does not produce your appearance.
2. DNA directs the production of proteins.
3. Proteins are responsible for your physical traits.
B. Flow of genetic information through the cell
1. Transcription—DNA to RNA
a. This occurs in the nucleus.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 77
2. Translation—RNA to protein
a. RNA leaves nucleus through nuclear pores.
b. This occurs in the cytoplasm on ribosomes.
C. Transcription overview
1. Flow of genetic information starts in the nucleus with DNA.
2. DNA directs production of RNA through the process of transcription.
3. Transcription makes mRNA (messenger RNA).
4. It follows base-pairing rules:
a. C is transcribed to G, and G is transcribed to C.
b. T is transcribed to A, but A is transcribed to U (uracil).
5. mRNA exits the nucleus and travels to the ribosome.
D. Translation overview
1. In translation, mRNA serves as instructions to build a sequence of amino acids.
2. mRNA contains successive codons—a sequence of three nucleotides—which
specifies one amino acid.
3. Ribosomes read each codon and attach the proper amino acid to a growing chain.
4. The resulting string of amino acids is a polypeptide.
6.5 Transcription creates a molecule of RNA from a molecule of DNA.
• CORE IDEA: During translation, the DNA double helix separates, and one strand is
used to generate a molecule of RNA. The RNA is processed to become messenger RNA,
which then exits the nucleus via a nuclear pore.
A. Transcription
1. Transcription is the transfer of information from DNA to messenger RNA (mRNA).
2. It occurs in the nucleus of eukaryotic cells.
B. RNA polymerase binds a promoter.
1. RNA polymerase binds to the promoter (DNA sequence).
2. Promoter acts as a “start here” signal marking the beginning of a gene.
3. By controlling whether or not RNA polymerase can bind, promoters turn genes on or
off.
C. RNA polymerase synthesizes a molecule of RNA.
1. After RNA polymerase binds to the promoter, it peels open the double helix.
2. One strand serves as a template for the formation of RNA.
3. RNA polymerase moves down the DNA.
a. It follows base-pairing rules.
b. C is transcribed to G, and G is transcribed to C.
c. T is transcribed to A, but A is transcribed to U (uracil).
4. As completed RNA peels away, DNA strands rejoin.
5. Transcription ends when RNA polymerase reaches a DNA “stop” sequence—
terminator.
D. RNA splicing
1. In eukaryotic cells, the RNA is processed before it leaves the nucleus.
2. RNA splicing
a. Introns: Stretches of RNA that do not code for amino acids are removed.
b. Exons: Stretches of RNA that do code for amino acids remain in the RNA.
3. One mRNA may be spliced in multiple ways to code for multiple proteins.
4. In addition, extra nucleotides are added as a “cap” and a “tail” to the RNA.
E. The mRNA leaves the nucleus.
1. The finalized RNA molecule is now called messenger RNA (mRNA).
2. mRNA leaves the nucleus through nuclear pores.

78 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
6.6 Translation involves the coordination of three kinds of RNA.
• CORE IDEA: Translation is accomplished by ribosomes, made from rRNA and protein.
Ribosomes use two kinds of RNA to produce a string of amino acids. The genetic code
dictates the correspondence between RNA triplets and amino acids.
A. Translation
1. Translation is the process through which messenger RNA (mRNA) is used to
produce a molecule of protein.
2. Translation takes place in the cytoplasm on ribosomes.
B. Ribosomes
1. Ribosomes are cellular structures that perform the translation of mRNA
polynucleotides into amino acid polypeptides.
2. Ribosomes are made of ribosomal RNA (rRNA) and proteins.
a. Each ribosome consists of two subunits that join to form the functional ribosome.
3. Within each ribosome are binding sites for mRNA (carrying the message) and transfer
RNA (tRNA).
a. tRNA brings the amino acids that match the codon to the ribosome.
4. The ribosome reads the mRNA three nucleotides at a time—codon.
5. Each codon encodes one amino acid.
C. Transfer RNA
1. tRNAs (transfer RNAs) have an anticodon at one end.
a. Follows base-pairing rules
b. C with G, and G with C
c. U with A, and A with U
2. The other end of the tRNA holds the amino acid that corresponds to that codon.
D. The genetic code
1. The correspondence between an RNA codon and its amino acid is called the triplet
code.
2. Every RNA codon encodes just one possible amino acid.
3. A given amino acid may be encoded by multiple codons.
4. There is one start codon (AUG) that signals the start of the genetic message.
5. There are three stop codons that signal the end of the message.
6. Each codon between start and stop codons encodes one amino acid.
6.7 Translation creates a molecule of protein via the genetic code.
• CORE IDEA: Translation begins when the ribosome assembles from its subunits at the
start codon of an mRNA. Elongation then proceeds, adding one amino acid at a time.
When a stop codon is reached, the ribosome machinery disassembles.
A. Translation
1. Ribosomes use information coded in messenger RNA (mRNA) to create
corresponding amino acid polypeptides.
2. Each ribosome contains binding sites for the mRNA and molecules of transfer RNA
(tRNA).
B. Initiation—Ribosome assembles.
1. Ribosomes exist as two separate components: the large and small subunits.
2. Translation begins when mRNA binds to a small ribosomal subunit.
3. A tRNA then binds the start codon of mRNA.
a. Start codon binds to anticodon of tRNA carrying amino acid methionine.
b. Start codon is UAC.
4. Large subunit then binds, creating a complete ribosome.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 79
C. Elongation—Polypeptide grows longer.
1. Additional amino acids are added one by one.
2. The anticodon of the incoming tRNA carrying its amino acid pairs with the mRNA
codon via the RNA base-pairing rules.
3. The new amino acid is added to the end of the growing polypeptide chain.
4. The old empty tRNA (from the previous step) exits the ribosome.
5. The ribosome moves the remaining tRNA to the spot just vacated.
6. The process continues, with each entering tRNA bringing a new amino acid to be
added.
D. Termination—Ribosome disassembles.
1. Elongation continues until the ribosome reaches a stop codon on the mRNA.
2. Stop codons do not code for amino acids, indicating the end of translation.
a. Stop codons are UAA, UAG, and UGA.
3. The completed polypeptide is freed, the ribosome splits back into subunits, and
mRNA and tRNA are released.
4. The released mRNA may then begin another round of translation, producing another
protein.
6.8 Gene expression is regulated in several ways.
• CORE IDEA: Through gene regulation (the turning on and off of genes), cells control
gene expression (the production of proteins). There are several points along the path from
DNA to RNA to protein that can be regulated.
A. Gene expression
1. Every cell in your body contains every one of your genes.
2. Each cell type looks and acts differently because each produces different proteins.
3. Gene regulation: Mechanisms that turn on and off certain genes in a particular cell.
4. Genes contain information used to produce proteins.
5. Turning a gene off means that gene expression—the flow of genetic information from
DNA to RNA to protein—is not being completed.
B. Gene regulation in action
1. If you examined genes from a set of cells, you would see that certain genes are turned
on in some cells and not others.

Gene type Intestinal cell Nerve cell White blood cell


Gene for glucose- Active Active Active
digesting enzyme
Antibody gene Active
Lactase gene Active
Hemoglobin gene

2. In the examples used, only intestinal cells produce the digestive enzyme lactase.
3. None of the cell types shown produce hemoglobin.
C. X chromosome inactivation
1. If a chromosome is condensed, the genes it contains are inaccessible and will not be
used to produce proteins.
2. X chromosome inactivation: In female mammals, one X chromosome in each body
cell is highly compacted and almost entirely inactive.
3. Ensures that males (who have only one X chromosome) and females (who have two)
have the same number of active genes.
4. The inactive X condenses down into a Barr body.

80 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
D. Control of gene expression
1. Transcription factors
a. In a typical eukaryotic cell, the majority of genes are “off”—not being used to
produce proteins.
b. Transcription factors are proteins that bind to the DNA before transcription can
begin.
2. Control of RNA
a. Before leaving the nucleus, RNA can be altered in several ways.
b. A cap and tail are added.
c. Introns (noncoding regions) are spliced out and exons (coding regions) may be
rearranged.
i. This produces several possible messenger RNAs from a single gene.
d. microRNAs (small RNA molecules) bind to mRNA, preventing them from
producing protein.
3. Protein control: Initiation, activation, breakdown
a. Translation (where messenger RNA is used to produce proteins) offers more places
for regulation.
b. The cell can control whether translation proceeds, how proteins are modified after
translation, and when proteins are broken down.
6.9 Signal transduction pathways can control gene expression.
• CORE IDEA: Cells can communicate with each other via molecules that trigger signal
transduction pathways in the receiving cell. The result is gene regulation. Such
communication is particularly important in the developing embryo.
A. Multicellular life depends on cell-to-cell signaling.
B. Signal transduction
1. Within multicellular organisms, cells typically communicate with each other by
producing signal molecules that exit one cell and bind to a receptor protein on the
outside of another cell.
2. Binding triggers a signal transduction pathway—a series of relay molecules that
convey a message from the outside of the cell into the cell’s cytoplasm and nucleus.
3. The signal usually results in the turning on or off of one or more genes.
C. Cell-to-cell signaling in a developing embryo
1. Development is the growth of an animal from an embryo into an adult.
2. It involves cell division (to increase body size) that must be carefully coordinated.
3. Chemical signals are passed between neighboring cells to properly control the
formation of organs as well as the overall organization of the body.
4. Induction occurs when one group of cells influences the development of an adjacent
group of cells.
a. It switches genes on or off in target cell.
b. Inductive signals can cause cells to change shape, migrate, or even destroy cells (as
in removal of webbing in the developing hand).
5. Homeotic genes are master control genes.
a. Homeotic genes are master control genes.
b. In developing embryos, they produce protein signals that turn groups of other genes
on or off.
b. Homeotic genes help establish the overall structure of an organism.
c. For example, specific homeotic genes direct which end of the embryo will be the
head, while others direct which body parts will develop in which locations.
i. The mutant fly has an extra set of wings due to mutation in a homeotic gene.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 81
6.10 Mutations can have a wide range of effects.
• CORE IDEA: Mutations, changes to the nucleotide sequence of DNA, can occur
spontaneously or be caused by mutagens. Point mutations occur at a single nucleotide,
whereas insertions and deletions can affect many mRNA codons.
A. Mutations
1. A mutation is any change in the nucleotide sequence of DNA.
2. Occasionally, mutations lead to improvements that make an organism better suited to
its environment.
a. These are the raw material of evolution by natural selection.
3. More often, mutations are harmful and will not enhance the survival of the affected
organism.
4. Some mutations involve a single nucleotide change, while others affect a larger
number of nucleotides.
B. Mutagens
1. Some mutations are spontaneous.
a. Due to errors during DNA replication
2. Other mutations are caused by mutagens—physical or chemical factors in the
environment that can damage DNA.
3. Many mutagens are carcinogens—cancer-causing agents.
a. Exposure to ultraviolet radiation, X-rays, tobacco products, and high-fat foods
increases risk.
b. Avoiding mutagens can help reduce the risk of developing cancer.
i. Apply sunscreen when outdoors, and include vitamins C and E from fresh fruits
and vegetables into a daily diet.

Mutations
Point mutations Frameshift mutations
Silent Missense Nonsense Insertions Deletions

C. Point mutations
1. A point mutation is the substitution of one DNA nucleotide for another.
2. Silent mutation does not change amino acid produced, so protein is unchanged.
a. Some amino acids are encoded by more than one RNA sequence.
3. Missense mutation substitutes one amino acid for another, so protein is changed.
a. Change in protein may be small or large depending on which amino acid is
substituted.
4. Nonsense mutation changes an amino acid codon to a stop codon, producing a
shortened protein.
a. A shortened protein is almost always defective.
D. Frameshift mutations
1. After a DNA gene is transcribed in messenger RNA, it is read as a series of codons.
a. A codon is three consecutive nucleotides.
2. Insertion mutations add nucleotides.
3. Deletion mutations delete nucleotides.
4. If an insertion or deletion throws off the reading frame, it is called a frameshift
mutation.
a. They often result in completely different and usually defective proteins.

82 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
6.11 Loss of gene expression control can result in cancer.
• CORE IDEA: Cancer is caused by out-of-control cell growth due to a breakdown of the
cell cycle control system. This can occur when proto-oncogenes (such as genes that code
for growth factors and tumor suppressors) are mutated to oncogenes.
A. Cancer
1. Cell division is a normal, necessary process that produces new cells from preexisting
cells.
2. Cell cycle control system controls the rate and timing of cell division.
3. A cell occasionally loses the ability to control its cell cycle.
4. A tumor is a mass of body cells growing out of control.
5. Cancer is a tumor that spreads to other tissues.
B. Proto-oncogenes and oncogenes
1. The cell cycle control system regulates the timing of cell duplication.
2. The cell cycle control system consists of proteins that integrate information from the
environment and communicate “start” and “stop” signals to the nucleus.
3. A mutation in a gene producing one of these proteins can cause the cell to fail to
respond to one of these signals.
4. A cell with such a mutation runs through the cycle again and again, producing new
cells when it should not.
5. A proto-oncogene is a normal, necessary gene that produces a protein that properly
regulates the cell cycle.
6. An oncogene is a mutated proto-oncogene that produces an abnormal protein that fails
to regulate the cell cycle.
a. The result is out-of-control growth.
C. Growth factors
1. A proto-oncogene is a gene that produces a protein that normally regulates the cell
cycle.
2. A proto-oncogene may produce a growth factor.
a. Growth factor is a protein that stimulates cell division.
b. Growth factors normally stimulate growth only when it is appropriate.
c. A mutation in a growth factor gene can make a protein that promotes cell division
when it should not.
i. A tumor may result.
D. Tumor suppressor genes
1. Tumor suppressor genes normally code for proteins that inhibit cell division.
2. A mutation that deactivates a tumor suppressor gene may result in uncontrolled
growth.
6.12 Cancer is caused by out-of-control cell growth.
• CORE IDEA: All tumors start in a single cell. If a tumor cannot move beyond its
original location, it is benign; if it is capable of spreading, it is malignant and causes
cancer. There are several ways to prevent and treat cancer.
A. Progression of cancer
1. Cancer is caused by abnormal growth of the body’s own cells.
2. Cancer always begins when DNA within a single cell undergoes a series of mutations.
a. Proto-oncogenes mutate into oncogenes.
b. Transformation is conversion of a normal cell into a cell that multiplies
continuously.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 83
3. If the mutated cell is not destroyed by the immune system, its descendants will form a
tumor.
4. Cancers are named for the place where they originate.
a. Lung cancer starts in the lung.
b. A cancer may spread from where it originates.
5. Metastasis is the spread of cancer cells from their site of origin through the body.
6. Types of cancer
a. Benign tumor (sometimes called a cyst or polyp) is one that cannot spread from its
original location.
i. They can be dangerous if their growth disrupts the organ in which they are
located (e.g., brain or intestine).
ii. They are not usually fatal because they do not spread.
b. A malignant tumor is one that can spread to other parts of the body.
i. Genetic and cellular changes enable it to spread.
ii. Malignant tumors are cancer.
iii. The spread of tumors is called metastasis.
B. Cancer treatment
1. Surgery
a. If a tumor is benign, surgery is often sufficient to remove it.
b. If a tumor is malignant, surgery to remove as much as possible is combined with
the next treatments.
2. Radiation therapy exposes specific areas to high-energy radiation.
a. Such radiation disrupts cell division to kill cancer cells.
b. Can also damage normal body cells.
3. Chemotherapy uses drugs to disrupt cell division.
a. Affects cells through the body.
b. May have negative side effects.
C. Cancer prevention
1. Some mutations that lead to cancer are inherited and can’t be prevented.
2. Some mutations that lead to cancer are spontaneous and can’t be prevented.
3. Most cases of cancer are caused by carcinogens.
a. Carcinogens are agents that promote the development of cancer.
4. Factors to reduce your cancer risk and increase your odds of survival if you do get it:
a. Healthy diet
b. Protection from sun—UV radiation
c. Not smoking
d. Regular screenings
e. Exercise
6.13 Genetic engineering involves manipulating DNA for practical purposes.
• CORE IDEA: Genetic engineering, the manipulation of genes for practical purposes, is
an application of biotechnology. A typical genetic engineering challenge is to clone a
gene in order to produce large quantities of a desired protein.
A. DNA can be mixed and matched.
1. A gene from one species may be cut and pasted into the DNA of a different species.
a. Chemical language of DNA is identical in all life.
B. How to clone a gene
1. Gene cloning: A gene that synthesizes the protein is . . .
a. Isolated—cut out gene of interest using restriction enzyme.

84 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
b. Inserted into a piece of bacterial DNA called a plasmid—also cut with same
restriction enzyme.
i. Cutting with the restriction enzyme produces sticky ends.
ii. Both the gene of interest and the plasmid will have complementary sticky ends.
iii. DNA ligase is used to paste together the fragments of DNA.
c. A plasmid with gene of interest inserted is called a recombinant plasmid.
2. As the bacteria multiply, large amounts of the gene, and thus protein, are produced.
3. See the human insulin example on pages 138–139.
C. Genetic engineering
1. Biotechnology is the manipulation of organisms or their components to make useful
products.
2. DNA technology is a set of methods for studying and manipulating genetic material.
3. Genetic engineering is the direct manipulation of genes for practical purposes.
D. Restriction enzymes
1. Restriction enzymes are used to cut DNA at only specific nucleotide sequences.
2. Each kind of restriction enzyme recognizes just one short sequence of DNA—
restriction site.
3. Restriction fragments have sticky ends.
4. Fragments cut with the same enzyme will have complementary sticky ends.
6.14 DNA may be manipulated in many ways within the laboratory.
• CORE IDEA: Scientists can manipulate DNA in various ways: it can be cut with
restriction enzymes, isolated from a cell and put into a genomic library, visualized using
nucleic acid probes, synthesized directly, or produced from a cell’s messenger RNA.
A. Genomic libraries
1. It is often useful to start with a whole genome—an organism’s entire set of DNA.
a. There are 3 billion nucleotides in humans.
2. From the genome, recombinant DNA—a DNA molecule containing nucleotides from
more than one source—can be made.
3. The entire genome is cut up with restriction enzymes to create a large set of
fragments.
4. Each fragment is inserted into a separate plasmid.
a. A plasmid is a small circular bit of bacterial DNA.
b. DNA ligase is used to join fragment to plasmid.
5. A genomic library is a collection of cloned DNA fragments that includes an
organism’s entire genome.
6. Once created, a genomic library can be used to hunt for and manipulate any gene from
the starting organism.
B. Nucleic acid probes
1. A researcher may wish to select just one DNA fragment from an entire genomic
library.
2. A nucleic acid probe can be used.
a. A nucleic acid probe is a complementary molecule made using radioactive or
fluorescent building blocks.
3. Because the sequence of the probe is complementary, the probe binds to the fragment
of interest and helps to visualize it.
C. DNA synthesis
1. DNA can be created from scratch using an automated DNA synthesizer.
2. These machines produce customized DNA molecules of any sequence.
3. Sequences can be joined to produce DNA molecules of any length.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 85
D. Complementary DNA
1. Within a cell, transcription produces mRNA from the DNA.
2. The mRNA is used to produce proteins.
3. Reverse transcriptase can synthesize DNA molecules from mRNA.
4. Complementary DNA (cDNA) represents just the genes that were being transcribed
in the cell at the time.
6.15 Plants and animals can be genetically modified.
• CORE IDEA: Genetic engineers can use plasmids to create transgenic plants and
animals. While GM plants currently make up a significant part of our food supply, GM
animals do not. The use of such organisms carries risks and benefits.
A. Genetically modified organisms (GMOs)
1. Genetically modified organisms (GMOs) are ones that have acquired one or more
genes by artificial means.
2. Transgenic organism: Gene transferred from another species.
a. A goat carrying a gene from a human.
3. Production of transgenic GMOs is one of the most widespread applications of genetic
engineering.
B. Transgenic plants
1. Genetically modified food crops can be produced by inserting a desired gene into a
plasmid.
a. A plasmid is a small, circular, independently replicated piece of DNA originally
isolated from a bacterium.
b. Recombinant plasmid carries the gene of interest.
2. Plasmid acts as a temporary DNA carrier to insert a gene of interest into the genome
of a plant.
3. The genetically modified plant then expresses the trait from the newly inserted gene.
4. Genetically modified food crops are widely consumed in the United States.
5. Some agricultural scientists hope the GM crops can increase food production, pest
resistance, and the nutritional value of crops.
6. Examples
a. Bt corn has a gene for an insecticide from the bacterium Bacillus thuringiensis.
b. Golden rice contains daffodil genes that produce beta-carotene. This rice could help
with vitamin A deficiency and resulting blindness.
c. A GM papaya variety resistant to the devastating ring spot virus was introduced in
Hawaii.
C. Transgenic animals
1. There is a millennia-old tradition of selectively breeding farm animals.
2. Scientists are working on various genetic modifications to food animals to make them
healthier or more productive.
3. To date, none of these animals are in our food supply.
a. In late 2015, the Food and Drug Administration approved a transgenic salmon for
consumption. It may be years before such fish are available for consumption.
4. Pharmaceutical companies have produced various GMOs that secrete medically useful
human proteins.
a. Procedure for producing Erythropoietin in goats is diagrammed on page 143.
D. Safety and ethical concerns
1. Use of GMOs has rapidly replaced traditional plant and animal breeding programs in
agriculture.

86 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
2. Regulations are still being drafted, so it is important for all citizens to be educated
about the possible risks and benefits of this technology.
3. See the table of pros and cons on page 143.
6.16 PCR can be used to multiply samples of DNA.
• CORE IDEA: Each round of the polymerase chain reaction (PCR) uses ingredients—
heat-stable DNA polymerase enzyme, DNA nucleotides, a sample to be studied, and
primers that target a specific sequence—to precisely double the amount of DNA.
A. PCR
1. Polymerase chain reaction (PCR) is a laboratory technique by which a specific
segment of DNA can be targeted and copied quickly and precisely.
2. Using PCR, a scientist can obtain enough DNA from a trace amount of blood or tissue
to allow further analysis.
3. Starting with just a single copy, automated PCR can generate billions of copies of a
DNA segment with a high degree of accuracy.
B. The PCR technique
1. In PCR, a sample of DNA is subjected to rounds of heating and cooling in a machine
called a thermal cycler.
2. The quantity of the desired region of DNA is doubled in each round.
3. DNA polymerase, a naturally occurring enzyme, is used to synthesize a new DNA
strand that is complementary to a single-stranded DNA sample.
a. DNA polymerase used was originally isolated from hot springs bacteria so it can
tolerate the high temperatures that would inactivate other organisms’ enzymes.
4. Technique
a. A double-stranded DNA molecule starts the process.
b. The sample is heated to near boiling.
i. Heat causes the hydrogen bonds that hold the double helix together to break apart.
c. The DNA strands separate due to high heat.
d. A heat-stable DNA polymerase is used to rebuild each of the missing strands.
e. The mixture is cooled, allowing the double-helix hydrogen bonds to re-form.
f. Each cycle doubles the amount of DNA.
g. Repeat the steps for the next cycle.
C. How DNA segments are targeted and copied
1. An investigator does not copy the entire DNA sample obtained (e.g., from a crime
scene).
2. PCR copies one specific region with the DNA.
3. Primers are used to target specific regions.
a. Primer: Short, chemically synthesized, single-stranded DNA molecules with
sequences that are complementary to sequences at each end of the target DNA
sequence.
4. DNA polymerase binds the primers and synthesizes to new DNA molecules using free
nucleotides included in the mixture.
5. By adding the correct primers and other needed ingredients, a large sample of the
DNA within a specific region can be obtained.
6. The DNA produced is then used for further analysis.
6.17 DNA profiles are based on STR analysis.
• CORE IDEA: DNA profiling can prove that two DNA samples came from the same
individual. PCR creates a sample of DNA containing specific short tandem repeats that
vary widely among people. Gel electrophoresis visualizes these sites.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 87
A. DNA profiling
1. DNA profiling is a set of laboratory techniques that allows an investigator to
determine with certainty whether two samples of DNA came from the same
individual.
B. Short tandem repeats
1. DNA profilers focus on specific sites within the genome that are known to vary
considerably from person to person.
2. Short tandem repeats (STRs) are sites where a short nucleotide sequence is repeated
many times in a row.
a. They are scattered throughout the genome.
b. Locations within the chromosome and the repeated sequences are the same from
individual to individual.
c. The number of repeats varies widely with the human population.
C. STR analysis
1. STR analysis is the current method for generating a DNA profile.
2. A comparison of the lengths of short tandem repeats is made at 13 predefined sites
within the human genome.
3. These sites vary so widely that no two humans have ever had the same number of
repeats at all 13 sites.
a. Exception: identical twins
4. Method
a. DNA is collected from the crime scene and the suspect.
b. PCR is used with specific primers to copy just the STR sites.
c. PCR produces large amounts of DNA from the STR sites.
d. Samples are analyzed by gel electrophoresis.
D. Gel electrophoresis
1. Gel electrophoresis allows visualization of DNA samples based on length.
2. DNA samples are loaded into the top of a gel.
3. Current is applied.
4. All DNA molecules are negatively charged so they migrate through the gel toward the
positive pole.
5. A dense thicket of fibers within the gel slows the migrations.
6. As a result, smaller pieces of DNA migrate toward the bottom of the gel faster than
larger pieces.
7. When the power is turned off, the DNA stops migrating.
8. Staining reveals the locations of the bands.
9. The banding pattern is compared to determine if the suspect’s sample matches the
crime scene sample.
6.18 Whole genomes can be sequenced.
• CORE IDEA: By digesting a cell’s DNA with enzymes and sequencing the fragments,
the entire genome of an organism can be determined. The human genome contains
21,000 genes that encode for 100,000 different proteins.
A. Genome sequencing
1. In 1995, a team of biologists announced that they had determined the DNA sequence
of the entire genome of Haemophilus influenza, a disease-causing bacterium.
2. This was the first successful experiment in genomics, the science of studying the
complete set of genes (genomes) and their interactions.
3. Many detailed genomes from a variety of species, including our own, have been
sequenced.

88 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
B. The Human Genome Project
1. In 2003, researchers announced that they had sequenced virtually all of the genes from
a human.
2. The Human Genome Project found that our chromosomes contain about 21,000
genes within about 3 billion DNA nucleotides.
3. Human genome can be compared with other organisms.
a. Compare the number of nucleotides.
b. Compare the number of genes: Rice has 42,000; mice have 22,000; humans have
21,000.
4. See human genome facts on page 148.
C. Whole-genome shotgun method
1. The whole-genome shotgun method sequences the entire genome of an organism
using several separate techniques.
2. Method
a. Genome(s): DNA is obtained from one or more individuals.
b. DNA fragments: DNA is digested with a variety of restriction enzymes, which chop
the DNA into small segments.
c. Sequences of DNA: Sequence of each DNA fragment is determined by an
automated sequencing machine.
d. Overlapping sequences: Computer programs use overlapping regions from each
fragment to determine the original order of the sequences.
e. Final sequence: The complete genome is uploaded to a database.
D. Proteomic
1. DNA ultimately controls cells.
2. Proteins actually perform the tasks that keep all cells functioning.
3. Proteomics is the field that examines the complete set of proteins encoded by a
genome.
4. The number of human proteins (about 100,000) far exceeds the number of genes
(about 21,000).
6.19 Gene therapy aims to cure genetic diseases.
• CORE IDEA: Human gene therapy involves the production of a recombinant retrovirus
carrying an RNA version of a normal human gene. The virus can infect bone marrow
cells, transferring the proper gene to a diseased individual.
A. Gene therapy
1. Many human diseases are caused by a mutation in a single gene.
2. Gene therapy is the alteration of a person’s genes in order to treat a disease.
3. It works in theory, and some people have been cured.
B. Obtaining a healthy gene
1. Gene therapy begins by isolating a normal gene from a healthy person.
2. Enzymes are used to produce an RNA version of the target DNA gene.
3. This RNA gene is then combined with an infectious, but harmless, retrovirus (a virus
with an RNA genome).
4. The retrovirus most commonly used is a crippled version of the cold virus.
C. Injecting the healthy gene
1. Once the recombinant retrovirus has been engineered to carry the healthy gene, that
gene needs to get inside a diseased person’s cells.
2. Bone marrow cells are ideally suited for this purpose because they multiply for a long
time.
a. Take bone marrow cells from the patient.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 89
b. Infect bone marrow cells with recombinant retrovirus.
i. Inside the bone marrow cell, RNA for the normal gene is converted into DNA.
ii. That DNA inserts itself into the cell’s genome.
3. The goal is to cure the patient, perhaps permanently, with a single injection.
D. A case study in gene therapy
1. Severe combined immunodeficiency disease (SCID)
a. This disease is caused by the absence of an enzyme required in the immune system.
b. SCID patients must remain isolated within protective “bubbles.”
c. SCID patients succumb to infections that would be easily fought off by a normal
immune system.
2. Since 2000, gene therapy has cured 22 children with SCID.
a. Four of the patients developed leukemia and one died because the retrovirus caused
some blood cells to become cancerous.
3. Gene therapy remains promising, but there is little evidence of safe and effective
applications.
4. Research continues with new, tougher safety regulations.

Key Terms

6.1 DNA is a polymer of nucleotides.


Base Double helix Polynucleotide
Base pair Nucleic acid Sugar
Deoxyribonucleic acid Nucleotide
DNA Phosphate
6.2 During DNA replication, a cell duplicates its chromosomes.
DNA replication Semi-conservative
6.3 DNA directs the production of proteins via RNA.
Deoxyribonucleic acid Ribonucleic acid
DNA RNA
6.4 Genetic information flows from DNA to RNA to protein.
Codon mRNA Translation
Messenger RNA Transcription
6.5 Transcription creates a molecule of RNA from a molecule of DNA.
Exon RNA polymerase Transcription
Intron RNA splicing
Promoter Terminator
6.6 Translation involves the coordination of three kinds of RNA.
Anticodon rRNA Translation
Codon Start codon Triplet code
Ribosome Stop codon tRNA
Ribosomal RNA Transfer RNA
6.7 Translation creates a molecule of protein via the genetic code.
Elongation Initiation Termination
6.8 Gene expression is regulated in several ways.
Barr body Gene regulation Transcription factor
Exon Intron X chromosome inactivation
Gene expression microRNA

90 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
6.9 Signal transduction pathways can control gene expression.
Development Induction
Homeotic gene Signal transduction pathway
6.10 Mutations can have a wide range of effects.
Carcinogen Mutation Silent mutation
Missense mutation Nonsense mutation
Mutagen Point mutation
6.11 Loss of gene expression control can result in cancer.
Cancer Oncogene Tumor suppressor gene
Cell cycle control system Proto-oncogene
Growth factor Tumor
6.12 Cancer is caused by out-of-control cell growth.
Benign tumor Malignant tumor Radiation therapy
Chemotherapy Metastasis Surgery
6.13 Genetic engineering involves manipulating DNA for practical purposes.
Biotechnology Genetic engineering Restriction site
DNA ligase Recombinant plasmid Sticky ends
DNA technology Restriction enzyme
Gene cloning Restriction fragment
6.14 DNA may be manipulated in many ways within the laboratory.
cDNA Genome Recombinant DNA
Complementary DNA Genomic library Restriction enzyme
DNA ligase Nucleic acid probe Reverse transcriptase
6.15 Plants and animals can be genetically modified.
Genetically modified organism Plasmid Transgenic organism
GMO Recombinant plasmid
6.16 PCR can be used to multiply samples of DNA.
DNA polymerase Polymerase chain reaction Thermal cycler
PCR Primer
6.17 DNA profiles are based on STR analysis.
DNA profiling Short tandem repeats STR analysis
Gel electrophoresis STR
6.18 Whole genomes can be sequenced.
Genome Human Genome Project Whole-genome shotgun method
Genomics Proteomics
6.19 Gene therapy aims to cure genetic diseases.
Gene therapy

Word Roots
• Poly = much or many
• Semi = half
• Anti = against or opposite
• Micro = very small
• Proto = first

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 91
• Onco = tumor or mass
• Trans = across, beyond, or through

Student Misconceptions and Teaching Tips


6.1 DNA is a polymer of nucleotides.
○ Use the analogy of a ladder to describe the structure of DNA.
The sugar-phosphate backbone is the two sides of the ladder.
The hydrogen bonds are the rungs (or steps) of the ladder.
6.2 During DNA replication, a cell duplicates its chromosomes.
○ DNA replication can be described as using a copying machine. The idea is to make
identical copies.
○ Unlike a copy machine, semi-conservative replication shows each DNA helix to be half
old and half new.
○ Short movies or animations will help tremendously. You may have to watch several to
find one at an appropriate level for nonmajors. You might try turning off the sound so
that students focus on what is happening and not the complicated description and
abundance of terms.
6.3 DNA directs the production of proteins via RNA.
○ DNA directs the synthesis of proteins. This may be confusing. Where do carbohydrates
and lipids come from? Proteins either are the final product or are the molecular machines
(enzymes) to make the final product. RNA is also made from the DNA (transcription).
6.4 Genetic information flows from DNA to RNA to protein.
○ Contrast replication with transcription/translation.
Replication copies DNA. It’s used only in mitosis or meiosis.
Transcription/translation makes proteins—used in every cell every second of your
life.
○ Transcription is like shorthand for those who remember that term. It’s kind of a copy of
DNA.
○ Translation is nucleic acid language being translated into the completely different
language of proteins.
○ A review of the relationship between amino acids and proteins would be helpful.
6.5 Transcription creates a molecule of RNA from a molecule of DNA.
○ Short movies or animations will help tremendously. You may have to watch several to
find one at an appropriate level for nonmajors. You might try turning off the sound so
that students focus on what is happening and not the complicated description and
abundance of terms.
○ Promoters and terminators are in the DNA sequence. They mark the start and end of a
gene.
Compare to start and stop codons that are in the mRNA (Module 6.6).
○ Transcription is not a copy of the entire DNA.
mRNA is kind of a copy of DNA.

92 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
mRNA is in RNA, not DNA; it’s only one gene, not all of them; it is modified to
remove introns; and it has a “cap” and “tail” that are not from the DNA sequence.
○ Introns and exons are difficult to remember. Introns are “in between” the coding regions.
Watch for students who associate “intron” with what is kept in, or “exon” with what
is exited from the mRNA.
○ If you cover Module 6.18, refer the students to RNA splicing to explain how one gene
can make more than one protein.
6.6 Translation involves the coordination of three kinds of RNA.
○ There are three kinds of RNA: rRNA, tRNA, and mRNA. All three are made by
translation. We focus on mRNA, but tRNA and rRNA are made the same way. DNA
codes for proteins and RNA.
6.7 Translation creates a molecule of protein via the genetic code.
○ Short movies or animations will help tremendously.
You may have to watch several to find one at an appropriate level for nonmajors.
You might try turning off the sound so that students focus on what is happening and
not the complicated description and abundance of terms.
6.8 Gene expression is regulated in several ways.
○ A glucose-digesting enzyme is part of cellular respiration. Every cell has to do cellular
respiration to make ATP to live. That gene will be turned on in every cell.
○ The hemoglobin gene is turned on only in red blood cells. Students may not know the
difference between red and white blood cells.
6.9 Signal transduction pathways can control gene expression.
○ An analogy for signal transduction is the following: Someone comes to the door of the
room (signal molecule). This person can’t come in the room, so she or he passes a message
to someone standing in the doorway (receptor protein embedded in plasma membrane). The
person at the door relays this message to someone standing inside the room (relay proteins).
The message is then taken to the instructor standing at the lectern (DNA in the nucleus).
6.10 Mutations can have a wide range of effects.
○ Mutations can be good (beneficial), bad (harmful), or nothing at all (silent).
○ A mutation can be nothing at all if it is silent. Redundancy in the genetic code covers up
for minor mutations that do not change the amino acid at all.
○ A missense mutation may change the protein very little or very much depending on the
switch.
You might show students amino acid structures just to show how some are similar
and some are very different.
Sickle-cell disease is a single nucleotide change; it changes a single amino acid,
which significantly changes the structure of hemoglobin.
○ Frameshift mutations can be illustrated using three-letter words.
Original: THE CAT ATE THE RAT.
Insertion: THE CAT ART ETH ERA T.
Deletion: THE _ATA TET HER AT.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 93
6.11 Loss of gene-expression control can result in cancer.
○ Why would we have genes for cancer? We don’t. We have genes that control the cell
cycle. Proto-oncogenes are normal healthy genes that, if they go wrong (turn into
oncogenes), can cause cancer. Oncogenes are discovered when we find the cause of a
particular kind of cancer. Then we look for the original (unmutated) gene. That original
gene is then a proto-oncogene.
○ Growth factors can be described as the “gas pedal” for cell division. Tumor suppressor
genes are the “brakes.” Both are required to control the speed of cell division in each cell.
If one is faulty, the cell may speed out of control.
6.12 Cancer is caused by out-of-control cell growth.
○ Students will feel they know a great deal about cancer. Encourage them to share their
knowledge and use it to guide discussion.
○ Be prepared for students who have had cancer themselves or have a family member or
friend who has had cancer.
6.13 Genetic engineering involves manipulating DNA for practical purposes.
○ The human insulin story is an excellent case history of the use of genetic engineering.
A quick Web search will reveal details students will find interesting and easy to relate to.
Many people may have or know someone who has insulin-dependent diabetes.
6.15 Plants and animals can be genetically modified.
○ Examples of the genetically modified crops in the text would be excellent case studies.
Students will find the general information more interesting if it is tied to a story they relate to.
6.16 PCR can be used to multiply samples of DNA.
○ A short video or animation can be very useful in conveying the idea of PCR.
○ The fact that PCR targets specific sequences will be further explored in Module 6.17.
6.17 DNA profiles are based on STR analysis.
○ The Innocence Project makes a very interesting case study for this topic. The use of
modern DNA profiling on old cases has released many unjustly imprisoned individuals.
Do a Web search for the project’s home page.
6.18 Whole genomes can be sequenced.
○ Refer the students to Module 6.5 on RNA splicing to explain how one gene can make
several proteins.
○ The Human Genome Project has many interesting individuals and technological
discoveries. Bring the real face of science into the class as you describe some of the
people involved in the project.
6.19 Gene therapy aims to cure genetic diseases.
○ A case study on SCID would bring a human face to gene therapy.

Class Activities
6.1 DNA is a polymer of nucleotides.
○ A simple diagram of DNA can be made from any Internet source. Remove the labels.
Allow students—working individually, in in-class groups, or at home with homework—
to label the parts. Use an image that is not identical to that on page 116.

94 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
6.2 During DNA replication, a cell duplicates its chromosomes.
○ Illustrate semi-conservative replication with strips of cloth or yarn. Larger items will have
to be used in larger lecture halls. The original two halves of the DNA helix should be in
one color. The “new” DNA should be in another color. Ask students how DNA
might be copied.
If the original DNA is blue and the new DNA is orange, will the original blue DNA
helix peel apart, copy in orange and . . . what next?
Will the two blues go together and the two oranges go together? No, that’s
conservative.
Will a blue and an orange go together? Yes, that’s semi-conservative.
○ Depending on your expectations, you might ask the students to practice the base-pairing
rules.
If I give you a strand of DNA that is ATGC, what is the matching strand? TACG
• This text does not emphasize the 3′-5′ orientation of the DNA molecule.
Many different examples can easily be made.
6.3 DNA directs the production of proteins via RNA.
○ A table for comparison of DNA and RNA can be made. Include similarities as well as
differences.
6.4 Genetic information flows from DNA to RNA to protein.
○ Given a list of terms, students can (individually or in groups, in or out of class) draw the
flow of genetic information through the cell.
Terms: nucleus, cytoplasm, DNA, RNA, ribosome, protein, nuclear pore, nuclear
envelope, transcription, translation
○ From the Instructor Exchange in MasteringBiology: Students Perform a Protein Synthesis
Play. Posted on June 1, 2011, by Instructor Exchange, written by Kelly A. Hogan and
James Oh, University of North Carolina at Chapel Hill.
6.5 Transcription creates a molecule of RNA from a molecule of DNA.
○ Depending on your expectations, you might ask the students to practice the base-pairing
rules.
If I give you a strand of DNA that is ATGC, what is the matching strand of mRNA?
UACG
• This text does not emphasize the 3′-5′ orientation of the DNA molecule.
Many different examples can easily be made.
6.6 Translation involves the coordination of three kinds of RNA.
○ Depending on your expectations, you might ask the students to practice the base-pairing
rules.
If I give you a strand of mRNA that is UAC, what is the matching anticodon on the
tRNA? AUG
• This text does not emphasize the 3′-5′ orientation of the molecules.
Many different examples can easily be made.
6.7 Translation creates a molecule of protein via the genetic code.
○ An interesting class activity would be to act out the process of translation. Use two chairs
to represent the two pockets in a ribosome. Student volunteers will be tRNA bringing in

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 95
an amino acid (amino acid name written on note card or sheet of paper). Make an mRNA
sequence. Have the students “read” the mRNA, and the appropriate tRNA brings the
amino acid and sits down. Transfer the growing amino acid chain as appropriate. You
might staple or tape the amino acids together.
6.8 Gene expression is regulated in several ways.
○ Have students suggest other cell types or other genes that might be added to the chart on
page 128.
6.9 Signal transduction pathways can control gene expression.
○ Ask students what the difference is between a duck foot and a chicken foot. Obviously,
the webbing is different. How does this benefit the chicken or duck? Chickens walk.
Having webbing would be a bad trait. Ducks swim. Having webbing is beneficial. A bird
had a mutation that never removed the webbing between its toes. Is that bad or good?
Depends on whether this is a walking bird or a swimming bird. This is a good foreshadow
of natural selection.
○ Induction is also involved in a tadpole’s tail being reabsorbed as it changes into an adult,
and in human females shedding the lining of the uterus during menstruation.
6.10 Mutations can have a wide range of effects.
○ Different examples of mutation can be provided to students as exercises.
○ Using the table on page 133, what type of mutation is given? How much will this
mutation change the protein?
6.11 Loss of gene-expression control can result in cancer.
○ Without books or notes, ask students to predict the outcome of a mutation using the
figures for mutated oncogene, growth factor, and tumor suppressor gene.
6.12 Cancer is caused by out-of-control cell growth.
○ Ask students why surgery cannot be used for all types of cancer. If you miss some cells or
the cancer has spread, it can return.
○ What are the side effects of radiation or chemotherapy? Hair loss, vomiting, nausea, and
so forth, are all associated with killing fast-growing cells. The goal is to kill the cancer
(the patient’s own cells gone wrong) before harming the patient too greatly.
○ Ask for suggestions on ways to prevent cancer. Be prepared for excellent suggestions and
pseudoscience.
6.13 Genetic engineering involves manipulating DNA for practical purposes.
○ Ask students to bring in examples of the use of genetic engineering in the news.
Genetically modified organisms (GMO) are often in the news. Discuss how the genetic
engineering was done. What was the source of the gene being inserted?
6.14 DNA may be manipulated many ways within the laboratory.
○ Practice the idea of complementary base pairing by having students make their own
nucleic acid probe. Pass out short DNA sequences. Ask student to create the
complementary DNA strand as a probe.
6.15 Plants and animals can be genetically modified.
○ Consider a debate on the pros and cons of genetically modified organisms. Do a Web
search for instructions on how best to conduct a debate in class that maintains order and
civility as well as maintains scientific facts as a basis of discussion.

96 INSTRUCTOR’S GUIDE FOR SIMON, BIOLOGY: THE CORE, 2e Copyright © 2017 Pearson Education, Inc.
6.16 PCR can be used to multiple samples of DNA.
○ Model PCR.
Create a short DNA sequence down a sheet of paper. Make one copy on a sheet of
paper. Use large letters to make the activity easier. Pass out additional pieces of
paper to the class. Sheets of paper may be cut into quarters lengthwise to save paper.
Start with the original DNA sequence. Cut it in half down the DNA helix. Ask what
step this represents.
Give each half to a student. The student writes the complementary base pair
sequence on their sheet of paper. Ask what step this represents.
Both halves of the DNA are present now and hydrogen bonding would occur. Ask
what step this represents. This is the end of the first cycle.
Each student passes their DNA pieces to 2 new people who copy the DNA
sequence. This is the end of the second cycle.
Repeat for multiple cycles. How many new copies of DNA are generated at the end
the series of cycles? Are they identical to the original DNA sample?
6.17 DNA profiles are based on STR analysis.
○ Paper-based activities are available that would make excellent activities in or out of class.
Do a Web search for STR analysis or gel electrophoresis.
6.18 Whole genomes can be sequenced.
○ To simulate the whole-genome shotgun method, find a paragraph from any book. Copy
partial phrases from the paragraph. Make sure that parts of the phrases overlap. Pass these
phrases out to individual students or student groups in class. Have them talk to each other
to find overlapping sequences to reconstruct the paragraph.
6.19 Gene therapy aims to cure genetic diseases.
○ As an in-class discussion or on a discussion board, ask students or teams of students to
invent their own gene therapy cure. They must choose a disease that is due to a mutation
of a single gene and explain the background and importance of their chosen disease.

Copyright © 2017 Pearson Education, Inc. Chapter 6 DNA: The Molecule of Life 97
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BUSH-FIRE ON THE MAKONDE PLATEAU

This ascent, though barren of results in other respects, has


produced one small monument of African art, a drawing of our
climbing caravan, which is here offered to the reader’s inspection.
The native artist has quite correctly indicated the steepness of the
mountain by the vertical line representing the road. The confusion of
circles and curves at the lower end stands for the buildings of the
Mission station:—the foundations of a church vast enough, should it
ever be finished, to hold all the converted heathen of Africa and the
adjacent continents; the ci devant cowhouse, in which the two aged
clergymen have found a primitive refuge after the destruction of their
beautiful buildings by the Majimaji, the boys’ school and the girls’
school—two large bamboo huts in the native style; and the dwellings
of the native teachers and boarders. The curly labyrinth at the upper
end of the line is the top of the mountain with its gneiss blocks. The
two uppermost climbers are the kirongozi or guide and one of our
men, the third is Captain Ewerbeck, and the fourth myself. The
District Commissioner is readily recognizable by the epaulettes with
the two stars denoting his military rank, which belong to the uniform
worn on duty by this class of officials. Of all attributes of the white
man this seems to make the greatest impression on the native mind,
since, in every drawing in my possession where
officers are represented, their rank is invariably (and
always correctly) indicated by the number of stars. In
the same way the native draughtsman never makes a
mistake with regard to the stripes on the sleeves of
non-commissioned officers, black or white. The
advantages of a well-developed corporation are here
evident! Ewerbeck and Seyfried are about the same
age as myself, and our chest and other measurements
are pretty nearly identical. This I suppose must be
the reason why the inhabitants of Lindi, and later on
those of the interior, have promoted me to the rank
of captain; at Lindi I went by the name of Hoffmani
mpya, “the new captain” (Hauptmann). The drawing
here reproduced is evidence of my promotion, the
artist having bestowed the epaulettes on me as well
as on Ewerbeck. The figures behind us are of no
importance, they are only the rest of our party. Now,
however, comes the psychologically noteworthy
point; I figure in the picture twice over, first
laboriously climbing the mountain, and then in
majestic pose at the top, in the act of photographing
OUR ASCENT the African landscape. You must know that the tripod
OF MTANDI
MOUNTAIN. shown in the drawing is that of my 13 × 18 cm.
DRAWN BY camera, the zig-zags between its legs are the brass
JUMA struts which keep it rigid; the long snake-like line is
the rubber tube for the release of the instantaneous
shutter—of which, as a matter of fact, I could make
no use on account of the mist,—and the photographer is, as above
stated, myself. The men behind me are my personal attendants to
whom the more fragile parts of the apparatus are usually entrusted.
The graphic reproduction of this ascent is no great achievement on
the part of the native intellect, but nevertheless it is a very important
document for the beginnings of art in general and for the African
point of view in particular. To the ethnographer, of all men, the most
apparently insignificant matters are not without importance, and
this is why the prospect of working undisturbed for many months in
these surroundings is such a delight to me.
Our ascent of Mtandi was concluded, at any rate for the present, by
a ceremonious breakfast, to which the two missionaries had kindly
invited us. Englishmen, as is well known, live extremely well in their
own country; but abroad, too, even in the far interior of a continent,
they know how to make the best of things. I was here impressed with
the fact that Masasi must be a “very nourishing district,” as Wilhelm
Raabe would say. We had no champagne, it is true—Archdeacon
Carnon had set it before us on the previous day, in a huge water-jug,
apologizing for the absence of champagne glasses. We showed him
that we were able to appreciate his hospitality, even in the absence of
such refinements.
The merriest part of our whole Mtandi expedition, however, was
the ride home, with the Mission pupils trotting along beside us. The
little fellows looked warlike enough with their bows and arrows, and
seemed desirous of shouting each other down. I could not at first
make out what they wanted, but on reaching home, that is to say, our
police-post, I soon understood that their object was nothing less than
to offer me the whole of their martial equipment for my ethnographic
collection. But not as a present—giving things away for nothing is not
in the negro’s line, and in this he resembles our German rustics. On
the contrary, these young people demanded fancy prices for the bows
which they had made on purpose to sell them to the mzungu, that
remarkable character who buys all sorts of native rubbish. I
purchased such of their wares as seemed suitable for my objects, and
thought it advisable to prevent disappointment to those whose offers
had been refused by giving each a copper or two out of the famous jar
of which we shall hear again later on. Before doing so, however, I
instituted a pleasing experiment, instructive for myself and highly
enjoyable for the youth of Masasi, in the shape of an archery
competition.
Comparative ethnography has for a long time past busied itself
with the task of classifying and analyzing all the technical and mental
activities of man. Thus some decades ago, the American, Morse,[12]
ascertained that all men who shoot, or ever have shot, with the bow,
have certain definite ways of drawing it. There are about half-a-
dozen distinct methods, which are so distributed over the globe that,
in some places the same release (or “loose” as it is technically called)
is known to be common to the whole of a large area, while elsewhere
the most abrupt contrasts may be observed between contiguous
nations or tribes. It might be supposed that there could be no
possible differences in so simple an action as that of drawing a bow;
but experiment shows otherwise, and this experiment I have made
over and over again in the course of my lectures.
It is a thousand to one that any German (leaving out of
consideration the English and the Belgians, who still practise archery
according to the rules of the game, and can distinguish a good “loose”
from a bad one), when he has taken the bow in his left hand and
grasped the arrow and the string in his right, will hold the notch as it
rests on the string between his thumb and forefinger, and thus only
indirectly draw the string by means of the arrow. This, which is the
“loose” we used on the little toy bows of our boyhood, is the very
worst conceivable, as anyone who understands the other methods
can convince himself by every shot he tries. It is obvious that the
arrow must slip from the fingers if a moderately strong pull is given.
The best proof of the inferiority of this particular “loose” is the fact
that it is very seldom found among those sections of mankind who
still use the bow as a serious and effective weapon, whether in war or
hunting. These handle it after a very different fashion. Only where
the bow is a mere survival, and only used as a toy by children (the
most conservative class in the community), as for instance among
ourselves, this method, quite useless for an effective shot, is
practised simply because no better is known.
If I felt compelled to take the boys at Masasi Mission as a standard
for estimating the culture of the race, I should have to say that here
too the bow is a survival, for nine-tenths of the whole multitude shot
in the same way as our boys at home, but with one difference; we
hold the bow horizontally, the African boys held it vertically, the
arrow lying on the left side of the string between the index and
middle finger. Only one-tenth of the whole number used a different
“loose,” and these, significantly enough, were older boys, who
therefore had evidently taken over with them into their Christianity a
considerable dose of old African conservatism.
My competition was arranged with a view, not so much of
registering the number of hits and misses, as of observing the
method of drawing; but, notwithstanding, I must say that the little
archers acquitted themselves by no means contemptibly. It is true
that the distances were short, and my mark was scarcely a small one,
being a copy of the Tägliche Rundschau; but the greater number sent
their arrows inside the rings I had hastily drawn on this improvised
target. They were proud of their success, too; and when I praised a
good shot it was good to see the triumphant looks that the little black
hero cast round on his admiring companions.
As to the other methods, if I were asked the question in my Leipzig
lecture-room, I should have to answer it at once. As it is, I am
enabled to claim the privilege of the investigator and excuse myself
from giving further information till I have collected sufficient
material by a series of fresh observations. I hope to gratify my
readers’ thirst for knowledge when I have traversed the whole plain
north of the Rovuma, and, encamped on the cool heights of the
Makonde plateau, find leisure to look back and take stock of my
studies. Till then—Au revoir, Messieurs!
MNYASA HUNTER WITH DOG. DRAWN BY SALIM MATCLA
CHAPTER VI
NATIVE LIFE SEEN FROM THE INSIDE

Masasi, end of July, 1906.

Every normal human being is a walking demonstration of the theory


of adaptation to environment. I have been in Africa barely two
months, and only as yet a fraction of a month in the interior, and yet
I feel quite at home already. After all, I could scarcely do otherwise.
On the 21st, when we had only lived together a few days, Mr.
Ewerbeck marched away before daybreak, by the light of a lantern
borne before him through the darkness of the tropic night, to attend
to higher duties at Lindi, viz., the reception of the eight delegates
from the Reichstag, now fairly embarked on that desperate
adventure which for many months past has kept our daily press busy
celebrating their heroism.
Nils Knudsen remains behind as the last relic of civilization. His
name alone is sufficient to indicate his Scandinavian origin, and he
is, in fact, a fair-haired descendant of the Vikings. He joined the
expedition so unobtrusively that at first I scarcely noticed the
presence of a third European. While Ewerbeck and I marched
proudly at the head of our long line of followers, Knudsen usually
brought up the rear, and in camp he remained modestly in the
background. Now that we have fixed our headquarters at Masasi, he
has become prominent by virtue of his office; he is supposed to keep
things straight here and exercise some supervision over the native
local authorities. Whether this is necessary, I am at present unable to
judge, having as yet no insight into the difficulties of internal
administration in a large district like Lindi. However, a man who
knows the country as well as Ewerbeck does, would hardly have
taken such a measure without good reason. In the meantime I have
persuaded Knudsen to quit his tent—which, to judge by its venerable
appearance, must have been left behind as too far gone to take away,
by Vasco Da Gama when he landed in this part of Africa—and come
to live with me in the rest-house. Now he is installed, with his scanty
possessions—two old tin trunks, which do not even appear to be full
—on one side of the spacious apartment, while I with my princely
outfit reside on the other. He is, however, abundantly compensated
for the niggardliness with which fortune has treated him by goodness
of heart and fineness of feeling. Knudsen’s life has been adventurous
enough, and recalls to some extent the fate of that English sailor who
was wrecked among the aborigines of South-East Australia, and had
to live as a savage among savages. My fair-haired neighbour did not
fare quite so badly as that; but he has had plenty of time to “go Fanti”
had he been so disposed. So far as I have yet ascertained anything
about his personal affairs, he started life as cabin-boy on board a
merchant vessel, from which he ran away about ten years ago, when
it was anchored in a harbour of Madagascar. He wandered about this
island for some years, and at last found his way across to the
mainland and into the hinterland of Lindi. He says that he never
learnt a trade, but professes to know something of a great many, and
can act on occasion as mason, builder, carpenter, and locksmith.
Indeed he erected all the buildings at the Luisenfelde mines, far
south near the Rovuma, which I may yet be able to visit, and was
general factotum there as long as they continued working. Since then
the municipality of Lindi has appointed him head instructor at the
industrial school, from which post he is at present on leave of
absence.
THROUGH THE BUSH ON A COLLECTING EXCURSION

Our manner of life here is, of course, essentially different from that
followed on the march. Life on the march is always full of charm,
more especially in a country quite new to one; and mine has so far
been entirely without drawbacks. In African travel-books we find
that almost every expedition begins with a thousand difficulties. The
start is fixed for a certain hour, but no carriers appear, and when at
last the leader of the expedition has, with infinite pains, got his men
together, they have still endless affairs to settle, wives and
sweethearts to take leave of, and what not, and have usually vanished
from the traveller’s ken on the very first evening. In my case
everything went like clockwork from the start. I can blame no one
but myself for the quarter of an hour’s delay in starting from Lindi,
which was caused by my being late for breakfast. On the second
morning the askari could not quite get on with the folding of the
tent, and Moritz with the best will in the world failed to get my
travelling-lamp into its case, which was certainly a very tight fit. But
with these exceptions we have all behaved as if we had been on the
road for months. Anyone who wants a substantial breakfast first
thing in the morning, after the English fashion, should not go
travelling in Africa. I have given directions to wake me at five.
Punctually to the minute, the sentinel calls softly into the tent,
“Amka, bwana” (“Wake up, sir”). I throw both feet over the high
edge of the trough-like camp bed, and jump into my khaki suit. The
water which Kibwana, in the performance of his duties as
housemaid, has thoughtfully placed at the tent door overnight, has
acquired a refreshing coolness in the low temperature of a tropic
night in the dry season. The shadow of the European at his toilet is
sharply outlined on the canvas by the burning lamp, which, however,
does not confine its illumination to its owner, but radiates a circle of
light on the shining brown faces of the carriers and the askari. The
former are busy tying up their loads for the march, while the soldiers
are ready to rush on the tent like a tiger on his prey, so soon as the
white man shall have finished dressing and come out. In the
twinkling of an eye the tent is folded, without a word spoken, or a
superfluous movement; it is division of labour in the best sense of
the word, faultlessly carried out. Meanwhile the traveller goes to his
camp-table, takes a hurried sip of tea, cocoa, or whatever his
favourite beverage may be, eating at the same time a piece of bread
baked by himself, and now stands ready for the march. “Tayari?”
(“Ready?”) his voice rings out over the camp. “Bado” (“Not yet”) is
the invariable answer. It is always the same lazy or awkward
members of the party who utter this word beloved of the African
servant. The beginner lets himself be misled by it at first, but in a few
days he takes no more notice of the “Bado,” but fires off his “Safari!”
(literally “Journey!”) or (as speedily introduced by me), “Los!”[13] at
the band in general, flourishes his walking-stick boldly in the air,
thereby indicating to the two leading askari the direction of the
march, and the day’s work has begun.
I do not know how other tribes are accustomed to behave at the
moment of starting, but my Wanyamwezi are certainly neither to
hold nor to bind on these occasions. With evident difficulty each one
has got his load lifted to head or shoulder, and stands in his place
bending under the weight. At the word of command arises an uproar
which baffles description. All the pent-up energy of their throats
rings out into the silent forest; stout sticks rattle in a wild, irregular
rhythm on the wooden cases, and, alas! also on the tin boxes, which
furnish only too good a resonator. The noise is infernal, but it is a
manifestation of joy and pleasure. We are off! and, once on the
march, the Wanyamwezi are in their element. Before long the chaos
of noise is reduced to some order; these men have an infinitely
delicate sense of rhythm, and so the din gradually resolves itself into
a kind of march sung to a drum accompaniment, whose charm even
the legs of the askari—otherwise too dignified for such childish
goings-on—cannot resist.

READY FOR MARCHING (MASASI)

Oh! the beauty of these early mornings in the tropics! It is now


getting on for six o’clock; the darkness of night has quickly yielded to
the short twilight of dawn; the first bright rays gild the light clouds
floating in the sky, and suddenly the disc of the sun rises in its
wonderful majesty above the horizon. With swift, vigorous strides,
and still in close order, the procession hastens through the dew-
drenched bush, two soldiers in the van, as if in a military expedition;
then, after an interval we Europeans, immediately followed by our
personal servants with guns, travelling-flask and camp-stool. Then
comes the main body of the soldiers followed by the long line of
carriers and the soldiers’ boys, and, lastly, to keep the laggards up to
the mark, and also to help any who have to fall out from exhaustion
or illness, two soldiers bringing up the rear. An admirable figure is
the mnyampara or headman. His position is in a sense purely
honorary, for he receives not a farthing more wages than the lowest
of his subordinates. Perhaps even this expression should not be used;
he is rather primus inter pares. The mnyampara is everywhere. He
is in front when the master sends for him, and he is back at the very
end of the line (which becomes longer with every hour of the march)
if there is a sick man needing his help. In such a case he carries the
man’s load himself, as a matter of course, and brings him safely to
camp. It seems to me that I have made an unusually happy choice in
Pesa mbili. He is young, like the great majority of my men, probably
between 23 and 25, of a deep black complexion, with markedly
negroid features, and a kind of feline glitter in his eyes; he is only of
medium height, but uncommonly strong and muscular; he speaks
shocking Swahili—far worse than my own—and withal he is a
treasure. It is not merely that he is an incomparable singer, whose
pleasant baritone voice never rests whether on the march or in camp,
but he thoroughly understands the organization of camp life, the
distribution of tasks and the direction of his men. The demands
made on such a man by the end of the day’s march are arduous
enough.
The delicious coolness of the morning has long since given place to
a perceptibly high temperature; the white man has exchanged his
light felt hat or still lighter travelling-cap for the heavy tropical
helmet, and the naked bodies of the carriers are coated with a
shining polish. These, who have been longing for the day to get warm
ever since they awoke shivering round the camp fire at four, have
now reached the goal of their desires; they are warm—very warm—
and the white man will do well to march at the head of the caravan,
otherwise he will find opportunities more numerous than agreeable
for studying the subject of “racial odours.” After two hours, or two
hours and a half, comes the first halt. The European shouts for his
camp-stool and sits watching the long string of loads coming up and
being lowered to the ground. A frugal breakfast of a couple of eggs, a
piece of cold meat, or a few bananas, here awaits the traveller, but
the carriers, who started without a meal, steadily fast on. It seems
incomprehensible that these men should be able to march for many
hours with a load of sixty or seventy pounds, while practising such
abstinence, but they are quite content to have it so. In the later hours
of the day, it is true, they begin to flag, their steps become slower and
shorter, and they lag more and more behind the personal “boys” who
have no heavy loads to carry. Yet when they reach camp at last, they
are as merry and cheerful as they were in the early morning. The
same noise—though now with quite different words from the throats
of the singers—overwhelms the European, who has long been seated
at the halting-place. My company seem to be obsessed by the
“Central-Magazin” at Dar es Salam, where they entered my service;
they are celebrating this spacious building in the closing song of their
day’s march.

CAMP AT MASASI

The duties of my followers—whether boys, askari, or porters—are


by no means over when they have reached camp. By the time they
come up, the leader of the expedition has looked round for a place to
pitch his tent, a matter which seems to me to require special gifts.
The fundamental principles to bear in mind are: that it should be
within reach of good drinking water and free from noxious insects,
such as ticks, mosquitoes, and jiggers. The second point, but one by
no means to be overlooked, is the position of the tent-pole with
regard to the course of the sun, and the next the shade of leafy trees,
if that is attainable. I find it simplest to draw the outline of the tent
on the sandy ground, after the spot has been carefully swept,
indicating the place where I want the door to be by a break in the
line. That is quite enough for my corporal in command. Scarcely have
the two unfortunates, whose shoulders are weighed down by my
heavy tent, come up panting and gasping for breath, when the loads
are unrolled, and in a twinkling every warrior has taken up his
position. “One, two, three!” and the two poles are in their places, and
the next moment I hear the blows of the mallet on the tent-pegs.
While this is going on, the two boys, Moritz and Kibwana, are
amusing themselves with my bed. This occupation seems to
represent for them the height of enjoyment, for it seems as if they
would never be done. Neither scolding nor threats can avail to hasten
their movements. It seems as if their usually slow brains had become
absolutely torpid. Mechanically they set up the bedstead;
mechanically they spread the cork mattress and the blankets over it;
in the same dull, apathetic way they finally set up the framework of
the mosquito-net. The soldiers have taken their departure long
before my two gentlemen condescend to carry the bed into the tent.
My carriers meanwhile have found all sorts of work to do. Water
has to be fetched for the whole caravan, and fires to be made, and the
sanitary requirements of the camp provided for; and noon is long
past by the time their turn comes and they can live their own life for
an hour or two. Even now they cannot be said to revel in luxury. This
southern part of the German territory is very poor in game, and in
any case I have no time for shooting, so that meat is almost an
unknown item in my people’s menu. Ugali, always ugali—stiff
porridge of millet, maize or manioc, boiled till it has almost a
vitreous consistency, and then shaped with the spoon used for
stirring into a kind of pudding—forms the staple of their meals day
after day.
INTERIOR OF A NATIVE HUT IN THE ROVUMA VALLEY

Here at Masasi the tables are turned; my men have a good time,
while I can scarcely get a minute to myself. My escort are quite
magnificently housed, they have moved into the baraza or council-
house to the left of my palatial quarters and fitted it up in the native
way. The negro has no love for a common apartment; he likes to
make a little nest apart for himself. This is quickly done: two or three
horizontal poles are placed as a scaffolding all round the projected
cabin, then a thick layer of long African grass is tied to them, and a
cosy place, cool by day and warm by night, is ready for each one. The
carriers, on the other hand, have built themselves huts in the open
space facing my abode, quite simple and neat, but, to my
astonishment, quite in the Masai style—neither circular hut nor
tembe. The circular hut I shall discuss in full later on, but in case
anyone should not know what a tembe is like, I will here say that the
best notion of it can be got by placing three or four railway carriages
at right angles to one another, so that they form a square or
parallelogram, with the doors inward. This tembe is found
throughout most of the northern and central part of German East
Africa, from Unyamwezi in the west to the coast on the east, and
from the Eyasi and Manyara basin in the north to Uhehe in the
south. The Masai hut, finally, can best be compared with a round-
topped trunk. Though the Masai, as everyone knows, usually stand
well over six feet, their huts, which (quite conformably with the
owners’ mode of life as cattle-breeders par excellence) are neatly and
fragrantly plastered with cowdung, are so low that even a person of
normal stature cannot stand upright in them. My Wanyamwezi,
however, never attempt to stand up in their huts; on the contrary,
they lie about lazily all day long on their heaps of straw.
My activities are all the more strenuous. The tropical day is short,
being only twelve hours from year’s end to year’s end, so that one has
to make the fullest possible use of it. At sunrise, which of course is at
six, everyone is on foot, breakfast is quickly despatched, and then the
day’s work begins. This beginning is curious enough. Everyone who
has commanded an African expedition must have experienced the
persistence of the natives in crediting him with medical skill and
knowledge, and every morning I find a long row of patients waiting
for me. Some of them are my own men, others inhabitants of Masasi
and its neighbourhood. One of my carriers has had a bad time. The
carrier’s load is, in East Africa, usually packed in the American
petroleum case. This is a light but strong wooden box measuring
about twenty-four inches in length by twelve in width and sixteen in
height, and originally intended to hold two tins of “kerosene.” The
tins have usually been divorced from the case, in order to continue a
useful and respected existence as utensils of all work in every Swahili
household; while the case without the tins is used as above stated.
One only of my cases remained true to its original destination, and
travelled with its full complement of oil on the shoulders of the
Mnyamwezi Kazi Ulaya.[14] The honest fellow strides ahead sturdily.
“It is hot,” he thinks. “I am beginning to perspire. Well, that is no
harm; the others are doing the same.... It is really very hot!” he
ejaculates after a while; “even my mafuta ya Ulaya, my European
oil, is beginning to smell.” The smell becomes stronger and the
carrier wetter as the day draws on, and when, at the end of the
march, he sets down his fragrant load, it is with a double feeling of
relief, for the load itself has become inexplicably lighter during the
last six hours. At last the truth dawns on him and his friends, and it
is a matter for thankfulness that none of them possess any matches,
for had one been struck close to Kazi Ulaya, the whole man would
have burst into a blaze, so soaked was he with Mr. Rockefeller’s
stock-in-trade.
Whether it is to be accounted for by a strong sense of discipline or
by an almost incredible apathy, the fact remains that this man did
not report himself on the first day when he discovered that the tins
were leaking, but calmly took up his burden next morning and
carried it without a murmur to the next stopping place. Though once
more actually swimming in kerosene, Kazi Ulaya’s peace of mind
would not even now have been disturbed but for the fact that
symptoms of eczema had appeared, which made him somewhat
uneasy. He therefore presented himself with the words a native
always uses when something is wrong with him and he asks the help
of the all-powerful white man—“Dawa, bwana” (“Medicine, sir”),
and pointed significantly, but with no sign of indignation, to his
condition. A thorough treatment with soap and water seemed
indicated in the first instance, to remove the incrustation of dirt
accumulated in seven days’ marching. It must be said, in justice to
the patient, that this state of things was exceptional and due to
scarcity of water, for Kazi Ulaya’s personal cleanliness was above the
average. I then dressed with lanoline, of which, fortunately, I had
brought a large tin with me. The patient is now gradually getting over
his trouble.
Another case gives a slight idea of the havoc wrought by the jigger.
One of the soldiers’ boys, an immensely tall Maaraba from the
country behind Sudi, comes up every morning to get dawa for a
badly, damaged great toe. Strangely enough, I have at present
neither corrosive sublimate nor iodoform in my medicine chest, the
only substitute being boric acid tabloids. I have to do the best I can
with these, but my patients have, whether they like it or not, got
accustomed to have my weak disinfectant applied at a somewhat
high temperature. In the case of such careless fellows as this
Maaraba, who has to thank his own lazy apathy for the loss of his
toe-nail (which has quite disappeared and is replaced by a large
ulcerated wound), the hot water is after all a well-deserved penalty.
He yells every time like a stuck pig, and swears by all his gods that
from henceforth he will look out for the funsa with the most
unceasing vigilance—for the strengthening of which laudable
resolutions his lord and master, thoroughly annoyed by the childish
behaviour of this giant, bestows on him a couple of vigorous but
kindly meant cuffs.
As to the health of the Masasi natives, I prefer to offer no opinion
for the present. The insight so far gained through my morning
consultations into the negligence or helplessness of the natives as
regards hygiene, only makes me more determined to study other
districts before pronouncing a judgment. I shall content myself with
saying here that the negro’s power of resisting the deleterious
influences of his treacherous continent is by no means as great as we,
amid the over-refined surroundings of our civilized life, usually
imagine. Infant mortality, in particular, seems to reach a height of
which we can form no idea.
Having seen my patients, the real day’s work begins, and I march
through the country in the character of Diogenes. On the first few
days, I crawled into the native huts armed merely with a box of
matches, which was very romantic, but did not answer my purpose. I
had never before been able to picture to myself what is meant by
Egyptian darkness, but now I know that the epithet is merely used on
the principle of pars pro toto, and that the thing belongs to the whole
continent, and is to be had of the very best quality here in the plain
west of the Makonde plateau. The native huts are entirely devoid of
windows, a feature which may seem to us unprogressive, but which is
in reality the outcome of long experience. The native wants to keep
his house cool, and can only do so by excluding the outside
temperature. For this reason he dislikes opening the front and back
doors of his home at the same time, and makes the thatch project
outward and downward far beyond the walls. My stable-lantern,
carried about the country in broad daylight by Moritz, is a great
amusement to the aborigines, and in truth our proceeding might well
seem eccentric to anyone ignorant of our object. In the darkness of a
hut-interior, however, they find their complete justification. First
comes a polite request from me, or from Mr. Knudsen, to the owner,
for permission to inspect his domain, which is granted with equal
politeness. This is followed by an eager search through the rooms
and compartments of which, to my surprise, the dwellings here are
composed. These are not elegant, such a notion being as yet wholly
foreign to the native consciousness; but they give unimpeachable
testimony to the inmates’ mode of life. In the centre, midway
between the two doors is the kitchen with the hearth and the most
indispensable household implements and stores. The hearth is
simplicity itself: three stones the size of a man’s head, or perhaps
only lumps of earth from an ant-heap, are placed at an angle of 120°
to each other. On these, surrounded by other pots, the great earthen
pot, with the inevitable ugali, rests over the smouldering fire. Lying
about among them are ladles, or spoons, and “spurtles” for stirring
the porridge. Over the fireplace, and well within reach of the smoke,
is a stage constructed out of five or six forked poles. On the cross-
sticks are laid heads of millet in close, uniform rows, and under
them, like the sausages in the smoke-room of a German farmhouse,
hang a great number of the largest and finest cobs of maize, by this
time covered with a shining layer of soot. If this does not protect
them from insects, nothing else will; for such is the final end and aim
of the whole process. In the temperate regions of Europe, science
may be concerned with preserving the seed-corn in a state capable of
germination till sowing-time; but here, in tropical Africa, with its all-
penetrating damp, its all-devouring insect and other destroyers, and,
finally, its want of suitable and permanent building material, this
saving of the seed is an art of practical utility. It will be one, and not
the least welcome, of my tasks, to study this art thoroughly in all its
details.
As to the economy of these natives, their struggle with the
recalcitrant nature of the country, and their care for the morrow, I
am waiting to express an opinion till I shall have gained fuller
experience. In the literature dealing with ethnology and national
economy, we have a long series of works devoted to the classification
of mankind according to the forms and stages of their economic life.
It is a matter of course that we occupy the highest stage; all authors
are agreed on one point, that we have taken out a lease of civilization
in all its departments. As to the arrangement of the other races and
nations, no two authors are agreed. The text-books swarm with
barbarous and half-barbarous peoples, with settled and nomadic,
hunter, shepherd, and fisher tribes, migratory and collecting tribes.
One group carries on its economic arts on a basis of tradition,
another on that of innate instinct, finally, we have even an animal
stage of economics. If all these classifications are thrown into a
common receptacle, the result is a dish with many ingredients, but
insipid as a whole. Its main constituent is a profound contempt for
those whom we may call the “nature-peoples.”[15] These books
produce the impression that the negro, for instance, lives direct from
hand to mouth, and in his divine carelessness takes no thought even
for to-day, much less for to-morrow morning.
The reality is quite otherwise, here and elsewhere, but here in an
especial degree. In Northern Germany, the modern intensive style of
farming is characterized by the barns irregularly distributed over the
fields, and in quite recent times by the corn-stacks, both of which,
since the introduction of the movable threshing-machine, have made
the old barn at the homestead well-nigh useless. Here the farming
differs only in degree, not in principle; here, too, miniature barns are
irregularly scattered over the shambas, or gardens; while other food-
stores which surprise us by their number and size are found close to
and in the homestead. If we examine the interior of the house with a
light, we find in all its compartments large earthen jars, hermetically
sealed with clay, containing ground-nuts, peas, beans, and the like,
and neatly-made bark cylinders, about a yard long, also covered with
clay and well caulked, for holding maize, millet and other kinds of
grain. All these receptacles, both outdoor and indoor, are placed to
protect them from insects, rodents and damp, on racks or platforms
of wood and bamboo, from fifteen inches to two feet high, plastered
with clay, and resting on stout, forked poles. The outdoor food-stores
are often of considerable dimensions. They resemble gigantic
mushrooms, with their thatched roofs projecting far beyond the
bamboo or straw structure, which is always plastered with mud
inside and out. Some have a door in their circumference after the
fashion of our cylindrical iron stoves; others have no opening
whatever, and if the owner wishes to take out the contents, he has to
tilt the roof on one side. For this purpose he has to ascend a ladder of
the most primitive construction—a couple of logs, no matter how
crooked, with slips of bamboo lashed across them a yard apart. I
cannot sketch these appliances without a smile, yet, in spite of their
primitive character, they show a certain gift of technical invention.
The keeping of pigeons is to us Europeans a very pleasing feature
in the village economy of these parts. Almost every homestead we
visit has one or more dovecotes, very different from ours, and yet
well suited to their purpose. The simplest form is a single bark
cylinder, made by stripping the bark whole from the section of a
moderately thick tree. The ends are fastened up with sticks or flat
stones, a hole is cut in the middle for letting the birds in and out, and

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