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EDITED BY
ANINDA MAZUMDAR
WRIDDHIMAN GHOSH
Systems Biogeochemistry
of Major Marine Biomes
Systems Biogeochemistry
of Major Marine Biomes
Edited by
Aninda Mazumdar
CSIR–National Institute of Oceanography
Goa, India
Wriddhiman Ghosh
Bose Institute
Kolkata, India
This edition first published 2022
© 2022 John Wiley & Sons, Inc.
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10 9 8 7 6 5 4 3 2 1
CONTENTS
List of Contributors...............................................................................................................................................vii
Preface...................................................................................................................................................................ix
10 Benthic Biome of the Southern Ocean: Present State of Knowledge and Future Perspectives
Moumita Bhowmik, Sumit Mandal, and Sarat C. Tripathy..............................................................................189
11 Biogeochemistry of the Antarctic Coasts: Implications for Biodiversity and Climate Change
Amrutha Karayakath, Jitendra. K. Pattanaik, Khem C. Saini, Pushpendu Kundu, and Felix Bast.......................211
v
vi Contents
Index...................................................................................................................................................................315
LIST OF CONTRIBUTORS
vii
viii LIST OF CONTRIBUTORS
Biological processes have profound roles in the chemical changes in marine biogeochemistry. In this intellectual
transformations of the marine realm. The nature and landscape, where our understanding of in situ biological
extent of biological activities, in turn, are controlled by a processes, their geological manifestations, and cyber
number of physical and chemical phenomena such as netic controls, are evolving faster than ever, this book
interaction of the ocean with the atmosphere and earth’s adopts a systems-based approach to integrate and update
crust, oceanic upwelling, oxygenation, sediment accu the information available on the geochemistry, geo
mulation, and inorganic and organic matter fluxes in dis physics, biology and ecology of four major categories of
solved and particulate forms from the land and the deep marine physiography: continental margins, ocean depths,
earth. The overall biogeochemical dynamics of the water polar oceans, and biophysically extreme environments.
column and sediment fluid also exert feedback influences The idea, at large, is to envision holistic pictures of all
on the structure and function of the biota, and, in the biogeochemical happenings within distinct systems of
entire process, the system evolves holistically in time and these oceanic provinces.
space. In this context, a marine biogeochemical system can While some of the biogeochemical regimes mulled over
be thought of as a geographically and geologically defined hold crucial implications for planetary health and bio
physiography that transcends latitudes, longitudes and sphere sustainability (by virtue of being the bellwethers
water-depths of the global ocean, and has its characteristic of perturbations brought about by anthropogenic inter
geobiological framework, overarching all the spatiotem ference, pollution, global warming and/or climate
poral dynamics of its structural (e.g. chemical and change), others are central to the understanding of the
biological species) and functional (e.g. reactions and trans Earth’s early biosphere, so their geobiologies hold critical
formation) components. implications for life-detection during space-exploration
Comprehensive understanding of marine biogeochem missions and potential habitability of differently consti
ical regimes entails systemic knowledge of the biomes. tuted oceanic systems in extraterrestrial locations.
Historically, studies of inorganic and organic geochem We expect the biome- based systemic perspective to
istry for water-columns and sediments (including both complement the traditional way of looking at marine bio
past and present records) contributed the most in deci geochemistry from the standpoint of individual elemental
phering biogeochemical processes within the marine cycles. Systemic consideration of biogeochemical prov
realm. In recent times, remarkable advances in high- inces of the global ocean would not only provide an intel
throughput meta-omics-based microbiological research, lectual baseline for integrating chemical records with
and molecular-taxonomy-based understanding of ben biome structures/functions but also lay the foundation of
thic ecology, have afforded increasing knowledge inter holistic policy frameworks for sustainable utilization of
faces between preserved geochemical records and marine resources, risk avoidance, and disaster management.
ecosystem structure/function. Such cross-talks of disci
plines have led to the discovery of a number of novel Aninda Mazumdar
(and often cryptic) biogeochemical processes within the Geological Oceanography
global ocean that were impossible to have been revealed CSIR-National Institute of Oceanography, India
previously from preserved chemical records alone. At the
same time, increasing cross-disciplinary interfaces have Wriddhiman Ghosh
also given rise to biogeochemical enigmas, of which Department of Microbiology
some may well be the potential seeds of future paradigm Bose Institute, India
ix
Biome I
Continental Margins
1
1
Biogeochemistry of Marine Oxygen Minimum Zones with Special
Emphasis on the Northern Indian Ocean
Svetlana Fernandes1,†, Subhrangshu Mandal2,†, Kalyani Sivan1,3, Aditya Peketi1, and Aninda Mazumdar1*
ABSTRACT
Oxygen minimum zones (OMZs) enclose O2 depleted subsurface water masses in the global ocean extending
approximately 150 to 1200 m below sea level. The most pronounced OMZs occur in Eastern Tropical North
Pacific off Mexico and California (ETNP), Eastern Tropical South Pacific off Peru and Chile (ETSP), and the
Arabian Sea (AS) defined by secondary nitrite maxima attributed to intense denitrification in the water column.
These OMZs sites are critical for biogeochemical processes that control the biodiversity and primary produc-
tivity of the ocean. The preservation of organic carbon is efficient within the sediments underlying oxygen-
depleted waters as a result of incomplete decomposition as it sinks through the water column and diminished
bioturbation activity. The partially degraded (reactive) organic matter fuels microbe-mediated biogeochemical
processes in the anoxic marine sediments where sulfate reduction is a significant remineralization pathway. The
OMZs exert a strong influence on the abundance, diversity, and composition of microbial communities. Recent
geochemical and environmental genomic studies identified the prevalence of C, N, and S cycles in the OMZs.
Here, we review the progress and current understanding of the C–S–N cycle in the OMZ sediments with regard
to its biogeochemistry and microbial ecology, and present a brief account of the mechanism of the formation of
OMZs in the northern Indian Ocean.
Systems Biogeochemistry of Major Marine Biomes, First Edition. Edited by Aninda Mazumdar and Wriddhiman Ghosh.
© 2022 John Wiley & Sons, Inc. Published 2022 by John Wiley & Sons, Inc.
3
4 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
30°E 60°E 90°E 120°E 150°E 180° 150°W 120°W 90°W 60°W 30°W 0° 30°E
90°N 90°N
60° 60°
30° 30°
9.00
0° 0°N
8.00
7.00
6.00
30° 30°
5.00
4.00
2.00
Minimum Value = 0.06
Maximum Value = 8.79 1.00
World Ocean Atlas 2009
Contour Interval = 0.25 90°S
90°S
30°E 60°E 90°E 120°E 150°E 180° 150°W 120°W 90°W 60°W 30°W 0° 30°E Color
scale
Figure 1.1 Global annual oxygen concentration (ml l–1) at 150 mbsl. Source: World Ocean Atlas 2009.
The buildup of OMZs is controlled by the interplay of highly saline Persian Gulf water (PGW) and relatively
physical and biological processes coupled with regional less saline but denser Red Sea water (RSW) are the lateral
geography. Inadequate ventilation of the oxygenated water sources of intermediate water in the AS (Bower et al.,
masses (e.g. the northern Indian Ocean), upwelling of 2005).
nutrient-rich deep waters (leading to high productivity in
the euphotic zone), and subsequent microbial respiration 1.1.1. The Arabian Sea Oxygen Minimum Zone
of organic particulates (phytodetritus, fecal pellets, dead
organisms, etc.) lead to a depletion of DO in the water The AS is believed to contain the thickest and most
column, resulting in the formation of OMZs (Behrenfeld intense of the OMZs (Agnihotri et al., 2003; Naqvi et al.,
et al., 2006; Regaudie-de-Gioux and Duarte, 2012). OMZs 2010a; Prakash et al., 2012; Banse et al., 2014; Acharya
are high in nutrient concentrations and support highly pro- and Panigrahi, 2016), extending over the entire sea, with
ductive fishing regions (Garçon et al., 2019). its upper boundary occurring at 100–150 m, and its lower
In the northern Indian Ocean, OMZs occur in both the boundary at 1000-1200 m (Wyrtki, 1971; Bange et al.,
AS and the BoB (Figure 1.2) because of their closed 2005; Banse et al., 2014), impinging upon a large area of
northern geographical boundaries and monsoon-driven the continental slope (Naqvi et al., 2006). The benthic
seasonal upwelling (Naqvi, 1991; Stramma et al., 2008). area of the upper slope underlying hypoxic water in the
The DO concentration within the Arabian Sea (ASOMZ) AS is computed to be 230 440 km2, making it responsible
reflects a balance between biological O2 consumption for over one-quarter of the world’s naturally hypoxic sea-
and O2 replenishment. The primary source of intermediate floor (Global estimate = 764 000 km2; Helly and
water (Indian Ocean Central Water: ICW) (Stramma Levin, 2004). The ASOMZ arises from its landlocked
et al., 1996; Schott and McCreary, 2001; Rixen et al., geography, mainly owing to the presence of the Asian
2020) in the northern Indian Ocean include contributions landmass that restricts the flow of oxygenated water from
from the Antarctic Intermediate Water (AAIW), the north. Monsoonal upwelling, wind-driven mixing,
Subantarctic Mode Water (SAMW) and the Indonesian Ekman pumping during summer (Kumar et al., 2009),
intermediate waters (Lachkar et al., 2019). The dense and convective mixing during winter (Madhupratap et al., 1996;
BIOGEOCHEMISTRY OF MARINE OXYGEN MINIMUM ZONES 5
28°N 100
95
90
24°N 85
80
75
20°N 70
65
60
16°N 55
50
45
20
12°N 40
20
35
30
8°N 25
20
40
15
4°N 10
5
60
80
0
0°
Figure 1.2 Annual oxygen concentration (μmol l–1) in the water column of the Indian Ocean. The data is obtained
from the World Ocean Atlas 2013 (Boyer et al., 2013). The map was produced using generic mapping tool
software.
Prasanna Kumar et al., 2001; Kumar et al., 2009), and c ompared with that of the Western Arabian Sea (WAS),
advection of NO3– rich upwelled water mass off the the OMZ is more intense in the central and eastern AS
Oman, Yemen, and Somalia margins leads to large-scale (Naqvi, 1991). This observation may be attributed to one
fertilization of the euphotic zone (Naqvi et al., 2006; or more hypotheses, including:
2010b). The productivity in this region is controlled by water column O2 consumption (via respiration of
the NO3– and Fe (aeolian) limitations which also show organic matter) during eastward transit of ICW from
seasonal variation (Naqvi et al., 2010b; Banerjee and Somali coast to the west coast of India (McCreary et al.,
Kumar, 2014). 2013; Acharyya and Panigrahi, 2016; Rixen et al., 2020);
The ASOMZ shows an east–west variation in structure, rapid sinking of the large phytoplankton detritus in
where the upper part (400 m) is located in the central/ the upwelling regions of the WAS (Naqvi et al., 2010b)
eastern basin, and the lower part (below 400 m) extends results in minimum respiration, alternatively, the slow
to the Omani coast, indicating a northward intensifica- sinking rate of organic matter (Hood et al., 2009) pro-
tion of the ASOMZ (McCreary et al., 2013). The PGW duced in the WAS and subsequent eastwardly advection
water enters the ASOMZ from the northwest at shallow of the organic particulates leads to DO depletion in
depths of – 300 m and spreads around the perimeter of central and eastern AS;
the basin and southward along the Omani coast (Prasad effective renewal of subsurface water along the western
et al., 2001), and the denser RSW encroaches to depths of boundary of the AS, by advection from the south, from
600–1000 m and spreads across the basin (Shankar et al., the Red Sea and from the Persian Gulf (Naqvi et al.,
2005; Shenoi et al., 2005). 2006). The prolonged ventilation times 7–8 years for
A poleward undercurrent (West India Undercurrent, RSW and (2–3 years) for PGW in the EAS compared
WIUC) carries the ICW northwards into the eastern with the ventilation time of (3–4 years and 1–2 years,
Arabian Sea (EAS) up to 16°N at a water depth of – respectively, in WAS lead to more significant DO deple-
500 m (Shenoy et al., 2020; Schmidt et al., 2020a). In the tion in the EAS (Schmidt et al., 2020a)
EAS, the OMZ expands southwards during the SW mon- physical processes such as mesoscale eddies prevailing
soon (~ 9°N) and retreats northwards during the NE in the WAS are expected to contribute towards effective
monsoon (11°N) (Shenoy et al., 2020). Although the oxygen renewal in the water column (McCreary et al.,
productivity across the EAS is significantly lower
2013; Schmidt et al., 2020b);
6 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
the cross-shelf transport of organic- rich sediments for denitrification/anammox to occur, there has been no
from the western continental shelf of India (Somayajulu indication of nitrogen loss via denitrification in the BoB.
et al., 1996; Sarma et al., 2020) and subsequent respira- Anammox reaction involves oxidation of NH4+ to N2 gas
tion, causing suboxia in the EAS. using NO2– as the electron acceptor under anoxic condi-
the warming of the PGW. Recent observations have tions. The relatively less intense OMZ in the BoB may be
seen warming of the PGW (shallow semi-enclosed sea attributed to weaker upwelling along the east coast of
with an average depth of 35 m) at a rate of two to three India than in Oman and Somalia. McCreary et al. (2013)
times faster than the global average rate, increasing its attributed lower respiration in the BoB to the absence of
buoyancy and may lead to poor, intermediate water ven- an advective flux of additional organic matter, as
tilation (Lachkar et al., 2019). observed in the EAS. The aggregation of organic matter
In addition to the perennial OMZ (pOMZ), the AS with mineral particles supplied by high river discharge in
experiences seasonal suboxia and denitrification over the the BoB increases the sinking speed of the organic
inner and mid-shelf off the west coast of India during detritus, thereby decreasing its remineralization rate and
and shortly after the southwest monsoon (Sharma, 1978; impacting on the OMZ structure and intensity (Al Azhar
Shetye et al., 1990; Naqvi et al., 2000, 2006). This coastal et al., 2017). In contrast, Sarma et al. (2018) suggested
oxygen-deficient zone is separated from the pOMZ in the the activities of cyclonic and anticyclonic eddies to be
central AS by the presence of slightly more oxygenated one of the possible reasons for excess DO in the BoB
waters of the WIUC that flow poleward (Naqvi et al., reported by Bristow et al. (2017). The cyclonic eddies
2006). During the peak of upwelling season (in bring up nutrient-rich water, causing enhanced produc-
September), almost the entire Indian shelf (and some of tivity and subsequent DO drawdown as a result of respi-
the Pakistan shelf) is severely hypoxic having an O2 ration. In contrast, the anticyclonic eddies cause the
concentration <0.5 ml l–1 covering an area of about downwelling of DO-rich surface water to deeper layers
180 000 km2 (Naqvi et al., 2000). The seasonal suboxia causing the weakening of the OMZ. In aAdition, Sarma
(even anoxia) reported in this region occurs because of and Bhaskar (2018) suggested westward advection of
coastal upwelling occurring along the western Indian shelf oxygenated waters within the 150– 300 mbsl depth zone
during June to November. Upwelling begins in April, driven by anticyclonic eddies originating in the Andaman
along the southwest coast of India (along with Kerala), waters. Recently, however, Bristow et al. (2017) observed
and gradually moves northward. The intense DO depletion extremely low levels of DO in the BoB and hypothesized
in both the seasonal OMZ (sOMZ) and pOMZ enhances that future increases in the deposition of nutrients from
the deposition of organic matter in the underlying sedi- atmospheric sources combined with the varying intensity
ments as a result of a combination of high (upwelling- of the summer monsoon could enhance organic matter
driven) primary productivity and inefficient degradation decomposition and O2 consumption leading to anammox
during sinking in the oxygen- depleted water column and nitrogen loss. The vertical distribution of O2 and
(Paropkari et al., 1992, 1993; Cowie, 2005). The intense NO2– in the AS (Lam et al., 2011) and BoB (Bristow et al.,
DO depletion has a profound influence on the underlying 2017) is plotted in Figure 1.3.
sediments, with respect to the redox conditions, microbial
community, nature and activity of benthic communities, 1.2. PRESERVATION OF ORGANIC MATTER
pore water redox processes, and consequently on the dia- AND SEDIMENT BIOGEOCHEMISTRY
genetic pathways (e.g. Cowie, 2005).
The preservation of organic carbon (OC) is efficient
1.1.2. The Bay of Bengal Oxygen Minimum Zone within the sediments underlying oxygen-depleted waters
(Paropkari et al., 1993; Eglinton et al., 1994; Van der
The BoB, in the northern Indian Ocean, is the largest Weijden et al., 1999; Hartnett et al., 1998; Hartnett and
bay in the world, bordered by India, Bangladesh, Sri Devol, 2003; Böning et al., 2004; Jessen et al., 2017, More
Lanka, and Myanmar. The BoB receives a large amount et al., 2018) because of incomplete breakdown while
of freshwater from several river systems, which drain into sinking through the water column as well as diminished
it. The rivers Ganga- Brahmaputra (G- B), Irrawaddy, bioturbation activity. A more significant proportion of
Godavari, Mahanadi, Krishna, and Kaveri contribute labile organic matter escapes degradation while sinking
60% of the total freshwater received by the BoB. Riverine through hypoxic or oxygen minimum regions of the
water flux of 2.95 × 1012 m3 year–1 (Sengupta et al., 2006) modern ocean than oxic zones (Van Mooy et al., 2002).
combined with an excess of precipitation over evapora- The partly degraded (reactive) organic matter fuels
tion results in a salinity stratified water column (Prasanna microbe-mediated sediment biogeochemical processes
Kumar et al., 2007). The BoB is one of the major global during burial, which results in modification of the
OMZs. Although the conditions appear to be conducive pore fluid composition and precipitation/dissolution
BIOGEOCHEMISTRY OF MARINE OXYGEN MINIMUM ZONES 7
200 200
100
400 400
200
Depth (m)
Depth (m)
Depth (m)
600 Central–NE 600 Omani Bay of
Arabian Sea Shelf Bengal
800 800
300
1000 1000
400
1200 1200
Figure 1.3 Vertical distribution of oxygen (solid blue circle) and nitrite concentrations (solid red circle) over the
Central–northeast Arabian Sea, Omani Shelf and the Bay of Bengal. Redrawn from Lam et al. (2011) and Bristow
et al. (2017).
60 –60
0 –0
–60 –60
Figure 1.4 Global distribution pattern of particulate carbon flux to the seafloor. Source: Reimers (2007) with
permission from American Chemical Society.
of inorganic mineral species (Madigan et al., 2000; organic matter content, and sediment grain size. The
Middelburg and Levin, 2009) Fernandes et al., 2018). upper and lower boundaries of the ASOMZ have a lower
The global distribution pattern of particulate organic TOC content than the OMZ core, which is attributed to
carbon flux (Reimers, 2007) is depicted in Figure 1.4. lack of bioturbation and high organic matter flux from
Remineralization of the partly degraded organic matter the DO-depleted water column in the latter (Fernandes
is strongly influenced by benthic biotic activity controlled et al., 2018). In contrast, the upper and lower edges of the
by sediment–water interface conditions such as DO OMZ are associated with a relatively high remineraliza-
concentration, diffusion of CH4/H2S, sedimentation rate, tion rate due to higher DO availability.
8 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
1.3. PORE FLUID GEOCHEMISTRY sect and are depleted to near-zero levels (Treude et al.,
2005; Sultan et al., 2016). The depth of SMTZ depends on
The chemical compositions of sediment pore-waters the organic matter availability, oxygen exposure time
are altered from their original seawater-like compositions (OET) of organic matter, flux of CH and SO 2–, and the
4 4
by various microbially mediated biogeochemical reactions activity of sulfate-reducing bacteria and methanotrophic
taking place at and below the sediment–water interface. archaea and bioturbation (Niewöhner et al., 1998; Hong
The biogeochemical reactions are associated with the et al., 2014; Komada et al., 2016; Lin et al., 2016; Hu
remineralization of organic matter. Thermodynamically, et al., 2017). The AOM process at the SMTZ leads to high
O2 is the most favorable terminal electron acceptor for the pore water alkalinity owing to bicarbonate (HCO -) and
3
remineralization of organic matter. When the aerobic res- hydrogen sulfide (HS-) production. The sulfate reduction
piration entirely consumes O2, other electron acceptors rates in marine sediment pore waters are controlled by the
(in order of decreasing energy gain) such as nitrate (NO3– availability of labile organic matter, SO 2– concentration,
4
), manganese oxides (Mn (IV)), iron oxides (Fe (III)), and bottom water temperature (OET), bioturbation, bacterial
sulfate (SO42–) are used, depending on their concentration distribution, and abundance (Aller, 1994; Kristensen, 2000;
in solution and their thermodynamic efficiency (Froelich Hedges and Keil, 1995; Nierop et al., 2017; Jessen et al.,
et al., 1979; Pattan et al., 2013; Turchyn and Schrag, 2006, 2017). Depth integrated sulfate reduction rates have been
Turchyn et al., 2016; Müller, 2018). Thus, there is a geo- reported to be maximum around continental margins
chemical zonation in the sediments, with redox condi- (Bowles et al., 2014), apparently linked to the higher depo-
tions ranging from oxic to methanic. The sediment layer sition/preservation of organic carbon in these areas of the
where NO3–, Mn (IV) and Fe (III) reduction controls global ocean (Dean et al., 1994; Littke et al., 1997; Van
organic matter remineralization is termed the suboxic der Weijden et al., 1999; Böning et al., 2004; Seiter et al.,
zone (Froelich et al., 1979). Although energetically more 2004, 2005; Rasiq et al., 2016; Dale et al., 2015; Fernandes
favorable than SO42–, electron acceptors in the suboxic et al., 2018).
zone are usually limited in supply, which makes them bio- Bottom water DO depletion and high preservation of
geochemically less significant (Aller, 1994; Thamdrup reactive organic matter within the OMZ sediment led to
et al., 1994; Jørgensen and Kasten, 2006; Seitaj et al., considerably higher sulfate reduction rates. The higher
2015). Microbial sulfate reduction is the major pathway sulfate reduction rate is associated with higher porewater
of organic carbon oxidation in the anoxic zone as the NH + and dissolved inorganic carbon (DIC) concentra-
4
high concentration of SO42– in seawater makes it a domi- tions and shallow SMTZ (Mazumdar et al., 2009, 2012;
nant electron acceptor (Heinrich and Reeburgh, 1987; Fernandes et al., 2018; Fernandes et al., 2020).
Widdel et al., 2007). The global estimate of marine sul- Studies from the Oman margin sediments by Pedersen
fate reduction is 11.3 teramoles of sulfate per year, which and Shimmield (1991) show depletion of porewater SO 2–
4
accounts for the oxidation of 12-29% of organic carbon concentration (<1 mM) within 50 to 100 meters below
that reaches the sea floor (Bowles et al., 2014). The seafloor (mbsf). Furthermore, Passier et al. (1997) (from
organoclastic sulfate reduction (OSR) (Froelich et al., Oman margin), Schenau et al. (2002) (from Pakistan and
1979; Treude et al., 2005; Jørgensen and Kasten, 2006; Oman margins), and Van der Weijden et al. (1999) (Oman
Riedinger et al., 2017) and anaerobic oxidation of margin) reported low sulfate reduction in the sediments.
methane (AOM) (Froelich et al., 1979; Reeburgh, 1980; Lower sulfate reduction in the Oman margin sediment is
Valentine and Reeburgh, 2000; Boetius et al., 2000) are also supported by a very low concentration of reduced
the two pathways of microbial sulfate reduction in marine sulfur compounds (Fe-sulfide) relative to total organic
sediments, represented by equations (1) and (2). carbon content (Emeis et al., 1991). The low sulfate
reduction rate in the ASOMZ sediments may result from
CH2O 106 NH3 16 H3PO 4 53 SO 4 2 the incorporation of sulfur into the organic matter, which
106 HCO3 53 HS 16 NH3 H3PO 4 53H (1) renders the organic matter refractory (Passier et al., 1997;
–
Table 1.1 Summarizes the calculated depth-integrated Thamdrup, 1994; Habicht et al., 1998; Böttcher et al.,
sedimentary sulfate reduction rates (SRRs) from different 2001).The burial of Fe sulfide minerals and sulfurized
oxygen minimum zones (OMZs) regions of the global ocean. organic matter depends on the availability of reactive Fe
OMZ water SRR (mmol (Yucel et al., 2010; Zhu et al., 2016), sedimentation rate,
Area depth (mbsl) cm yr )
–2 –1
Reference reactive organic matter flux (Berner, 1985; Raiswell and
Berner, 1985; Wilkin and Barnes, 1997; Werne et al.,
Eastern 200–1200 0.0008– Fernandes
Arabian 0.0113 et al. (2018) 2003; Markovic et al., 2015), and bottom water DO
Sea OMZ concentration. The degree of pyritization (DOP) values
Pakistan 200–1200 0.00036– Law et al. (2009) in sediments underlying the oxygenated waters are < 0.45,
margin 0.01642 whereas, under dysoxic and euxinic waters the values
Oman 200–1000 0.000035– Pedersen and range between 0.46 and 0.75 and > 0.75, respectively
margin 0.00011 Shimmield (Raiswell and Berner, 1985; Raiswell and Canfield, 2012).
(1991) In the ASOMZ, pyritization is limited by the availability
Off central 70–450 0.3504– Ferdelman et al., of reactive Fe oxides attributed to the reductive dissolu-
Chile 1.09135 (1997), tion of Fe in the water column or at the sediment–water
Thamdrup and
interface as a result of low DO concentration (Scheneau
Canfield
et al., 2002). The bottom water DO concentrations and
(1996)
Off central 50–650 0.3212– Fossing (1990) detrital organic matter availability controls the spatial
Peru 1.25195 extent and the degree of bioturbation and bioirrigation.
Off NW 150–800 0.011315– Hartnett and The activity of benthic organisms not only modifies the
Mexico 0.06862 Devol (2003) porewater concentration profiles it also plays an impor-
tant role by oxidizing Fe-sulfide minerals close to the sed-
iment–water interface. The sediments underlying OMZs
show the minimum influence of bioturbation
et al., 2017). See Table 1.1 for depth-integrated sedimen- (Levin, 2003, Cowie and Levin, 2009). The absence of
tary SRRs from different OMZ regions of the global burrowing/irrigation would minimize the exposure of
Ocean. early diagenetic Fe-sulfides to oxidants such as NO3–/
NO2– thereby enhancing the preservation of early sulfidi-
1.4. SEDIMENTARY SULFIDIZATION zation. The relative significance of organic matter sulfu-
AND SULFURIZATION rization depends on the availability of labile organic
molecules and the extent and rate of reactive Fe con-
Hydrogen sulfide produced during sulfate reduction in sumption (Zaback and Pratt, 1992; Passier et al., 1997;
sediments is diffused from the microbial cell into the sur- Werne et al., 2004). Loss of sedimentary reactive Fe
rounding pore water and is trapped in the sediment as Fe through reductive dissolution and enhanced preservation
sulfide minerals (sulfidization) and organosulfur com- of highly labile organic matter in the sediments under-
pounds (sulfurization). A significant fraction of H2S may lying OMZs would promote enhanced organic matter
diffuse out of the sediment–water interface and be oxi- sulfurization (Lückge et al., 2002; Schneau et al., 2002).
dized to SO42– or elemental sulfur (S0). Porewater H2S is The OBS constitutes an estimated 50% of the total sedi-
oxidized to intermediate species such as S0, thiosulfate mentary sulfur in the Peru margin following the polysul-
(polysulfides: Sx2-, HSx2–) and sulfoxyanoins (sulfite, thio- fide pathway (Mossmann et al., 1991). The incorporation
sulfate, and polythionates) (Chen and Morris, 1972; of sulfur in organic molecules (sulfurization) occurs
Berner and Westrich, 1985; Thamdrup et al., 1994; either intramolecularly (as cyclo sulfo groups such as thi-
Canfield et al., 2005). Sulfide oxidation can be microbe- olane, thiane, and thiophene) or intermolecularly through
mediated (e.g. Nielsen et al., 2010; Eckert et al., 2011; S2− or Sx2− bonds between larger molecules (Sinninghe
Rao et al., 2016) or abiotic, by reaction with oxides such Damsté and de Leeuw, 1990; Abdulla et al., 2020).
as MnO2 or FeO(OH) (Berner and Westrich, 1985; Lallier-Verges et al. (1993) found pyrite infillings in pore
Thamdrup et al., 1993; Yao and Millero, 1993, 1995, 1996; spaces and pyrite framboids in sediment rich in autoch-
Canfield et al., 2005). The intermediate sulfur species thonous organic matter from the Oman margin.
produced from sulfide oxidation can undergo dispropor- Furthermore, they suggested that 50% of organic matter
tionation reactions where the sulfur intermediates are degradation in organic poor sediments is supported by
simultaneously transformed to both H2S and SO42–; these sulfate reduction and attributed it to the deposition of
reactions are often referred to as inorganic fermentation zooplankton debris (in addition to phytoplankton) with
because they do not involve any other electron donor or mineral skeletons, which increase porosity and enhance
acceptor (Bak and Cypionka, 1987, Canfield and sulfate reduction. While in organic-rich sediments, only
10 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
20 % of the organic matter degradation is supported by oxygenation have also been observed to cause a composi-
sulfate reduction. This may be caused by the deposition tional change in benthic communities (e.g. Sellanes and
of purely organic phytoplankton with low porosity. Neira, 2006; Woulds et al., 2007; Gutiérrez et al., 2008).
Bioturbation (particle mixing) in OMZ sediments is
1.5. BENTHIC BIOLOGY generally diminished owing to the reduction in species
diversity and body size of benthic fauna. This usually
Oxygen Minimum Zones, which impinge on sediments leads to the formation of a generation of laminated or
of continental margins, have a strong influence on the varved sediments underlying OMZs (e.g. Levin et al.,
abundance, diversity, and composition of benthic fauna 2009; Schimmelmann et al., 2016). However, some gutless
(Levin, 2003). Low bottom- water DO concentrations symbiont taxa are capable of bioturbating OMZ sedi-
limit O2 penetration into the sediment, which creates ments (Levin, 2003). Bioturbation generally leads to the
unfavorable conditions for most benthic organisms to churning of organic matter and particles deeper into the
thrive. The abundance and diversity of benthic macrofau- deposit, contributing to carbon burial and can fuel sub-
nal communities within the OMZs are typically low, and seafloor microbial processes. Laminated anoxic sedi-
only a few tolerant benthic species are known to survive ments typically contribute less to nutrient recycling.
in these regions (Levin and Gage, 1998). However, small Thus, more labile organic material remains unused (Levin
organisms (microbes, metazoan meiofauna, and forami- and Gallo, 2019).
nifera) may have a higher density in OMZs because of the
abundance of detrital food and the absence of predators 1.6. MICROBIAL METABOLISM IN THE MARINE
(e.g. Levin et al., 1991; Neira et al., 2001, 2018). OXYGEN MINIMUM ZONE WATER COLUMN
If sulfide is present in the upper sedimentary layers of AND SEDIMENT
OMZs, it inhibits aerobic respiration and can also react
with trace amounts of O2 to form hydrogen peroxide Marine phototrophic and chemolithoautotrophic
(H2O2), which can cause cell damage (Bernhard and microorganisms produce massive quantities of organic
Bowser, 2008). Many benthic organisms living in OMZ compounds that, in conjunction with other inorganic
environments develop morphological adaptations to cope compounds, go through intricate circuits of biogeochem-
with the O2 limitation. Low O2 availability in OMZs leads ical transformations involving a wide variety of consumers
to the prevalence of hypoxia-tolerant fauna such as nem- and decomposers. These chemoorganoheterotrophic micro-
atodes, polychaetes, and some calcareous foraminifera. organisms, in their turn, form and sequester an equally
Most calcifying invertebrates tend to disappear in sub- wide variety of dissolved and particulate matter in marine
oxic environments. However, some exceptions, such as the waters and sediments. These biogeochemical transforma-
snail Alia permodesta and the mussel Amygdallum poli- tions and recycling networks are central to the produc-
tum, have thin shells in suboxic or anoxic sediments tivity, biodiversity, ecological balance, and resourcefulness
(Levin, 2003; Moffitt et al., 2015). Some of the other of the oceanic waters and sediments. However, major
commonly observed adaptations in benthic fauna colo- microbe-assisted functional metabolic processes identified
nizing OMZs include an increase in gill surface area in so far in the water column of OMZ, include oxidative-
some crustaceans and polychaetes (Levin, 2003), elonga- reductive cycling of sulfur compounds, methanogenesis,
tion of branchiae in polychaetes (Lamont and Gage, 2000; and N transformations.
Levin et al., 2009, 2010), test flattening of some forami-
niferal species, and reduced body size in metazoan mac- 1.7. NITROGEN METABOLISM IN THE MARINE
rofauna (Gooday et al., 2010). MARINE OXYGEN MINIMUM ZONE WATER
The lower transition zones of OMZs, where O2 concen- COLUMN
trations begin to increase, are often regions of intense
benthic biological activity characterized by a dramatic Bilogical nitrogen fixation (BNF) is the process by
change in the population density of several benthic which N2 is converted to NH3 and subsequently into bio-
species (Levin, 2003; Gooday et al., 2009), an observation mass by N2-fixing bacteria and archaea (Sohm et al.,
commonly termed as the ‘edge effect’ (Mullins et al., 2011). The biomass produced during BNF and assimila-
1985; Levin, 2003). A zonation of faunal communities tion may then release N compounds into the ocean. The
across O2 gradients has been observed on OMZ-impinged N loss through denitrification and anammox processes
continental margins, indicating the existence of substan- are dominant in the water column of the OMZs and the
tial O2 tolerance thresholds for different benthic biota. sediment underlying the OMZ (Capone and Knapp, 2007).
These gradients are formed as a result of the specific O2 For the last few decades, a substantial increase in ocean-
tolerances of each species and potentially also the absence ography and omics-based data has dramatically improved
of larger predators (Levin, 2003). Seasonal changes in our understanding of the marine N cycle, particularly in
BIOGEOCHEMISTRY OF MARINE OXYGEN MINIMUM ZONES 11
the OMZs. However, a contrasting influence of O2 con- Nitrosospira, Nitrospina, Nitrococcus, Sagittula,
centrations on anammox and denitrification may be Candidatus Scalindua, SAR11 group, SUP05/
observed. On one hand, some experimental data shows ARCTIC96BD- 19, Planctomycetes, among others
200 and 900 nM concentrations of DO cause a 50% drop (Molina et al., 2005; Beman et al., 2013; Bristow et al.,
in N2 production by the microbial community through 2016; Bertagnolli and Stewart, 2018). Furthermore, high-
denitrification and anammox metabolism, respectively throughput genetic and proteome- level investigation
(Dalsgaard et al., 2014). On the other hand, a separate (functional marker gene analysis, metatranscriptome,
study reports active denitrification and anammox metab- metaproteome) also highlighted the presence and func-
olism in the presence of micromolar levels of DO in tionality of microbes capable of nitrogen compound
OMZ off Conceptión, Chile (Bristow et al., 2016). metabolism by the identification of respective enzymes
Several literature reports show the selective prevalence from the OMZ waters such as ammonia monooxygenase
of anammox group in the marine OMZ water column off enzyme active subunit (amoA), nitrous oxide reductase
northern Chile and ETSP ocean, compared with other (nosZ), nitrite reductase (nirS), nitric oxide reductase
types (Molina et al., 2005; Galán et al., 2009; Lam et al., (norB), nitrate reductase (narG), hydrazine oxidoreduc-
2009; Kalvelage et al., 2013), which may be attributed to tase (hzo), nitrite reductase (nirK), nitrite oxidase (NXR)
release of NH4+ during decomposition of sinking organic (Molina et al., 2005; Lam et al., 2009; Dalsgaard et al.,
matter in the water column and benthic NH4+ flux 2014).
(Kalvelage et al., 2013).
Although some studies have revealed anammox 1.8. MICROBIOLOGICAL PERSPECTIVE
(OMZs) off Namibia, Peru, and Chile (Thamdrup et al., OF SULFUR METABOLISM IN THE MARINE
2006; Hamersley et al., 2007) as the predominant pathway OXYGEN MINIMUM ZONE WATER COLUMN
of fixed N loss, data from the ASOMZ revealed domi-
nance of denitrification metabolism over anammox Pioneering work by Canfield et al. (2010) first brought
activity in the water column (Ward et al., 2009; Bulow to the fore the role of sulfur species in the anaerobic
et al., 2010). Some recent studies have revealed the sulfur cycling of Chilean OMZs. However, before this
presence of Candidatus Scalindua clades 2 (predicted to study, detection and isolation of several sulfur oxidizing–
have anammox activity) sequences from the ASOMZ reducing, bacterial members from geographically distinct
(Woebken et al., 2008). The aerobic ammonia-oxidizing OMZ (off the coast of Peru and Chile) water also gave
archaea (AOA) and anaerobic ammonia- oxidizing enough hints about their probable ecological relevance
(anammox) bacteria show a unique depth distribution (Stevens and Ulloa, 2008; Finster and Kjeldsen, 2010). In
and niche segregation pattern (Pitcher et al., 2011) in the general, sulfide produced in anoxic organic-rich marine
water column of ASOMZ, where the prevalence of AOA sediments via bacterial sulfate reduction is reoxidized
was found at a water depth of 170 m while anammox within the sediment, resulting in minimal fluxes of the
retained their highest abundance at a water depth of 450– sulfide to the water column (Brüchert et al., 2003).
750 m. However, archaeal and bacterial mediated Furthermore, retention sulfide in the water column also
ammonia oxidation also has been reported in OMZs of depends on biological or chemical oxidation: by precipi-
ETNP (Peng et al., 2015) (see Table 1.2 for detailed tation as Fe sulfides and organic-bound sulfur (OBS)
information). However, some recent reports also show formation (Brüchert, 1998). Nonetheless, some of the lit-
nitrite oxidation in the OMZs of the ETNP and Namibian erature showed the presence of specific sulfide oxidiz-
sea region (Füssel et al., 2012; Beman et al., 2013). The ingand nitrate respiring or storing microbes
co-existence of nitrite oxidation and anammox activity (Thiomargarita sp.; Beggiatoa spp.) at the juncture of the
has been observed in the OMZ of the Namibian sea sediment–water interface, although their ecological rele-
region,; indicating competition between the microbial vance in OMZ water column is not yet clearly understood
population with each other for a common substrate, (Schulz et al., 1999). However, for the last few years,
namely NO2– (Füssel et al., 2012). Both Nitrococcus and advanced molecular-omics and biogeochemical
Nitrospina were found to be the prevalent bacterial groups approaches have unravelled complex S- cycling in the
(9% of the total microbial community) in the OMZ of OMZ water column. For eample, a maximum abundance
the Namibian sea region, whereas only the latter, was of metagenomic reads (individual DNA fragment
dominant for efficient nitrite oxidation in the OMZ of sequenced) affiliated to sulfide oxidizing (6.3 to 16.2%)
ETNP (Füssel et al., 2012; Beman et al., 2013). Moreover, and sulfate reducing (2.1 to 2.4%) taxa have been detected
functionally active microbial groups involved in OMZ in the Chilean OMZ water column (Canfield et al., 2010).
water column nitrogen transformations identified to date Moreover, another bacterial group, Marinimicrobia clade
through different omics-based, culture-based, and molec- SHBH1141, was also abundant in anoxic and anoxic–
ular approach includes Nitrosopumilus, Nitrosopelagicus, sulfidic OMZ waters, and can oxidize sulfide to polysulfide
Table 1.2 Microbiological features of the well-studied oxygen minimum zones (OMZs) water-column of the global ocean.
In situ microbial
processes detected so Microbiology or molecular technique
far (nitrogen used for decrypting biogeochemical Taxonomic groups responsible for
Sl. no Name of the OMZ O2 (μM) metabolism) process in situ metabolic process References
1 OMZ off northern 2–12 Anammox activity 16S rRNA gene and partial genes Planctomycetes, Scalindua spp. Galán et al. (2009)
Chile sequencing, CARD-FISH, 15N
labelling incubations
2 Off the coast of 0.005–0 Ammonium and 16S rRNA gene and partial genes Nitrosopumilus, Bristow et al. (2016)
Concepcion, nitrite oxidation sequencing, 15N labelling Nitrosopelagicus
Chile incubations
(36°30′85 S,
73°07′75 W)
3 Off the coast of <10 Anammox activity 16S rRNA gene and partial genes Anammox-related 16S ribosomal Hamersley et al. (2007)
Peru and sequencing, 15N labeling ribonucleic acid gene sequences
northern Chile incubations, FISH
4 Eastern Tropical <10 Anammox activity, Functional gene analysis, Candidatus Scalindua sp. T23 Lam et al. (2009), Ulloa
South dissimilatory metagenome, 15N labelling et al. (2012)
Pacific (ETSP) reduction of nitrate incubations
to ammonia (DNRA)
5 Eastern South <10 Aerobic ammonium 16S rRNA gene and partial genes Nitrosospira-like βAOB Molina et al. (2007)
Pacific off oxidation sequencing, Functional gene
northern Chile analysis
6 Eastern tropical <1 Ammonia and Nitrite 16S rRNA gene and partial genes Nitrospina, archaeal and β- Beman et al. (2013),
North Pacific oxidation, DNRA, sequencing, 15N labeling proteobacterial groups Peng et al. (2015),
Ocean Anammox activity incubations, Functional gene Pajares et al. (2019)
analysis
7 Namibian sea <10 Nitrite oxidation FISH, 15N labelling incubations Nitrococcus, Nitrospina Füssel et al. (2012)
region
8 Arabian Sea OMZ <2 Denitrification, 16S rRNA gene and partial genes Ammonia-oxidizing archaea (AOA) Ward et al. (2009),
ammonia-oxidation, sequencing, N tracer incubations, and anaerobic ammonia-oxidizing Bulow et al. (2010),
anammox activity Functional gene analysis (anammox) bacteria Pitcher et al. (2011)
Sulfur metabolism
9 Northern Chilean <13 Sulfide oxidation, Metagenome, Functional gene SUP05 group, ARTIC96BD lineage Canfield et al. (2010),
coast Sulfate reduction analysis of the gamma-proteobacteria, Des Crowe et al. (2018)
ulfatibacillum,Desulfobacterium,D
esulfococcus, Syntrophobacter,
and Desulfovibrio
10 Eastern Tropical <10 Sulfide oxidation 16S rRNA gene and partial genes SUP05,Candidatus Thioglobus Schunck et al. (2013),
South sequencing, metagenomics and autotrophicus Callbeck et al. (2018)
Pacific (ETSP) genome binning CARD-FISH, 15N
labeling incubations
11 North eastern <10 Sulfide oxidation Metagenome, Functional gene Marinimicrobia clades Hawley et al. (2017)
subarctic Pacific analysis, genome binning
(NESAP)
Methane metabolism
12 Eastern tropical <10 Anaerobic methane 16S rRNA gene and partial genes NC10 bacterial clade, clade OPU3 Padilla et al. (2016,
North Pacific oxidation sequencing, Metagenome, 2017), Chronopoulou
Ocean Functional gene analysis, genome et al. (2017),
binning, 3H-CH4 and 14C-CH4 Thamdrup et al.
labeling experiment (2019)
CARD-FISH, catalyzed reporter deposition–fluorescence in situ hybridization; βAOB, Betaproteobacteria ammonia–oxidizing archaea; DNRA, dissimilatory nitrate
reduction to ammonia.
14 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
(polyS), that is ultimately stored and later regenerated to highlighted the role of microbial redox metabolisms in
H2S. It also has the genetic potential for nitrous oxide preempting the accumulation of this highly reactive poly-
reduction to N2 and is considered to have roles in both S thionate in sediment pore- fluids, over and above the
and N cycles (Hawley et al., 2017; Bertagnolli and known abiotic mechanisms of tetrathionate scavenging
Stewart, 2018). However, as far as the sulfate-reducing by in situ sulfide (Mandal et al., 2020). Notably, in-depth
bacterial community in OMZ water is concerned, genome data of SUP05 also revealed that this organism
significant proportions of metagenomic reads ascribable has the genetic potential for the utilization of thiosulfate.
to the genera Desulfatibacillum, Desulfobacterium, Thus, althoughcurrent knowledge highlights the role of
Desulfococcus, Syntrophobacter, and Desulfovibrio species sulfide, the role of other intermediate reactive redox
have been found (Canfield et al., 2010; Bertagnolli and species of S cannot be ruled out in the S cycle of the
Stewart, 2018) (see Table 1.2 for detailed information). OMZ water column.
Furthermore, a survey of functional marker genes related
to sulfur metabolism identified in the Chilean OMZ 1.9. MICROBIOLOGY OF METHANE CYCLING
water column includes gene clusters for dissimilatory sul- IN THE OXYGEN MINIMUM ZONE WATER
fite reductase enzyme (dsr), the sox gene complex, and the COLUMN
adenosine 5-phosphosulfate (APS) reductase gene (apr)
(Canfield et al., 2010). In the context of coupling between High-resolution water-column studies revealed the
the S and N cycle, it is noteworthy that sulfate reduction existence of a 300 m thick layer with elevated methane
may also contribute to the NH4+ requirements for anam- concentrations (20–105 nM) in the anoxic core of ETNP
mox bacteria because there is ample evidence suggesting (Chronopoulou et al., 2017). Another geochemical inves-
the inadequate liberation of NH4+ during the heterotro- tigation also revealed presence of CH4 in the eastern
phic denitrification that is necessary to drive anammox ETNP water column (Pack et al., 2015) (for concentra-
activity in many OMZ waters (Thamdrup et al., 2006; tions and its oxidation rates see Table 1.2). Several omics-
Lam et al., 2009). based investigations revealed the presence of genes
Another study, based on the Chilean OMZ water (particulate methane monooxygenase: pMMO) and tran-
column, also revealed the existence of active sulfide scripts (16S rRNA and other relevant functional genes)
oxidizing bacterial community (SUP05/ARTIC96BD belonging to a unique group of denitrifying methano-
lineage of the gammaproteobacteria) that have a high trophs in the candidate bacterial division NC10 from
affinity for sulfide and have the ability to oxidize it at very Eastern Pacific OMZs (Padilla et al., 2016). This bacte-
low concentration (<100 nM) (see Table 1.2 for detailed rial group has the genetic potential to perform nitric
information; Crowe et al., 2018). This phenomenon indi- oxide dismutation along with oxygen production, thus
cates that such an anaerobic sulfide oxidizing bacterial holding significant importance in coupling the NO2– and
community (having high affinity for sulfide) is likely to CH4 cycle. However, successive high-throughput genome
maintain vanishingly low sulfide concentrations in OMZs binning experiments from the aforementioned ecosystem
water-column, thereby keeping the S cycling cryptic recovered near-complete (95%) draft genome represent-
(rapid oxidation of sulfide into sulfate). Furthermore, ing another methanotroph clade OPU3 (having genomic
another geomicrobiological exploration of ETSP region potential for partial denitrification) that forms a
in sulfide-poor offshore OMZ waters off the coast of maximum abundance of (4%) of the total microbial
Peru revealed the abundance and activity of sulfide community sequenced (Padilla et al., 2017). Although
oxidizing–denitrifying bacteria (SUP05, Candidatus metagenomic studies on the ASOMZ water column
Thioglobus autotrophicus, belonging to SUP05 bacterial showed the existence of CH4 cycling, the active function-
clade) having a role in driving the S cycling; via the ality of this cycle needs further biogeochemical and
continued oxidation of co-transported elemental sulfur microbiological substantiation (Lüke et al., 2016).
(Schunck et al., 2013; Callbeck et al., 2018). Considering
the present state of information, there was no apparent 1.10. MICROBIAL METABOLISM IN MARINE
reason to presume that such sulfide- based cryptic S OXYGEN MINIMUM ZONE SEDIMENTS
cycling would be operational in geographically distinct,
nitrite and sulfide rich OMZ water columns with similar In general, OMZ sediments are characterized by two
geomicrobiological features. In the light of the present predominant microbial processes: sulfate reduction and
topic, notably, a recent study based on two ~3 m long sed- methanogenesis. However, most of the well-characterized
iment cores (collected from 530 m and 580 m below sea OMZ sediments exhibited distinct zonation patterns
level) located within the pOMZ of the EAS off the west depending on these two metabolic processes. It has gener-
coast of India revealed active tetrathionate-based biogeo- ally been observed that sulfate reducing bacteria and
chemical S cycling in anoxic marine sediment horizon. It methanogenic archaea compete for the common
BIOGEOCHEMISTRY OF MARINE OXYGEN MINIMUM ZONES 15
s ubstrates such as hydrogen and acetate. Owing to higher a ffiliations are concerned, methanotrophic archaea are
substrate affinity, sulfate reducing bacteria have the formed three distinct clusters related to orders
ability to outcompete methanogenic archaea as long as Methanosarcinales and Methanomicrobiales under the
SO42– ions are present in the sediment porewaters to act as phylum Euryarchaeota (Knittel and Boetius 2009).
electon acceptor (Treude et al., 2014; Maltby et al., 2016). Moreover, AOM enriches the sediment with HCO3– and
As seawater is the main source of SO42– in the marine sed- HS– and selectively increases the 12C in the in situ DIC.
iment, a downward replenishing of the SO42– concentration Notably, an abundance of sulfate reducing bacteria
in the sediment- pore-water influences the sulfate along with high aerial sulfate reduction rate, high pore-
reduction rate. However, microbial methanogenesis only water sulfide concentration, and shallowing of the SMTZ
starts when the SO42– in the sediment is nearly or entirely depth has been detected in the ASOMZ sediments located
exhausted. The overlapping zone between these two is in the center of the vertical expanse of the OMZ
generally known as a sulfate methane transition zone (Fernandes et al., 2018). The AOM was also identified in
(SMTZ), where both the SO42- and CH4 coexist (Treude the same sediment cores from the signature of significant
et al., 2014; Maltby et al., 2016). Irrespective of the depth 13
C depletion in the DIC content (Fernandes et al., 2018).
at which they occur, SMTZs are commonly found in all However, another recent study based on seasonal oxygen
anoxic sediments where SO42– is transported from above minimum zones (sOMZ) and pOMZ across the western
and CH4 is transported from the bottom. Thus, SMTZ is Indian shelf; revealed the abundance of methanogens/
considered a hot spot for anaerobic oxidation of methane anaerobic-methane-oxidizers/sulfate-reducers/acetogens
via the syntrophic relationship between sulfate reducers that heightened in the topmost sediment layer and then
and methanotrophs (Knittel and Boetius, 2009). declined via synchronized fluctuations until the SMTZ
Sulfate reduction is generally carried out by both was reached (Bhattacharya et al., 2021). Furthermore,
bacteria and archaeal groups. They typically couple the another recent study based on the same ASOMZ sedi-
oxidation of organic compounds or molecular hydrogen ment system also revealed the functionally active aerobic
to the reduction of SO42– to H2S to obtain their energy. bacterial community that belongs to a diverse bacterial
Sulfate reducing bacteria are also able to utilize a variety group (sulfur chemolithotrophs; methylotrophs etc.)
of low molecular mass organic compounds such as (Bhattacharya et al., 2020) (see Table 1.3 for detailed
monocarboxylic and dicarboxylic aliphatic acids, information). The functional genomics and transcrip-
alcohols, polar aromatic compounds, and hydrocarbons tomics approach detected several genes responsible for
as electron donors (Rabus et al., 2006). In contrast, meth- aerobic respiration and oxidation of methane, ammonia,
anogenesis, is restricted only to archaea. They are obli- alcohol, thiosulfate,sulfite, and organosulfur compounds,
gate CH4 producers: i.e. they obtain all of their required thereby indicating the existence of diverse metabolic
energy by producing CH4 only. Methanogenic archaea groups distinct from prototypical sulfate reducers or
can use a restricted number of substrates for CH4 produc- methanogens. Notably, in this context, another work by
tion, such as CO2 and H2 (for the hydrogenotrophic Mandal et al. (2020) also revealed the dynamics of
group) along with acetate (acetoclastic group) and meth- functionally active tetrathionate metabolizing bacterial
anol, methylamine, etc. (methylotrophic group) community along with decrypting the role of tetrathion-
(Hedderich and Whitman, 2006). Substrates for both sul- ate in the sedimentary S cycle of ASOMZ sediments.
fate reduction and methanogenesis are formed as the end Conversely, although some other geochemical explora-
products of biodegradation and fermentation of organic tion based on OMZs of the Pakistan margin of the AS
macromolecules. While hydrogenotrophic and acetoclas- revealed sedimentary Mn, P, Fe, and S cycling, microbial
tic methanogenesis depends on common substrates with involvement for those metabolism has still to be addressed
sulfate reduction, methylotrophic methanogenesis uses (Law et al., 2009; Kraal et al., 2012).
distinct substrates. Having a higher affinity towards their Another study revealed the co-occurrence of metha-
substrates, sulfate reducers always outcompete hydroge- nogenesis and sulfate reduction in the sediment surface
notrophic and acetoclastic methanogens. of the upwelling region off the Peruvian coast, which
However, methylotrophic methanogens can escape this is considered to be one of the most intense OMZs
competition with sulfate reducers and operate methano- (Maltby et al., 2016). This study indirectly indicated
genesis metabolism simultaneously with sulfate reduction the use of non-competitive substrates for methanogen-
in the SO42– containing sediment zone. However, the co- esis in the sulfate reducing zone and a higher avail-
occurrence of sulfate reduction and methanogenesis is ability of organic carbon in the sediments as the
also possible and mostly observed in organic-rich sedi- potential cause of this unusual phenomenon.
ments. Anaerobic methanotrophic archaea (with AOM Furthermore, active benthic N cycling in the Peruvian
potential) are also found in syntrophic association with OMZ was also reported by Dale et al. (2016), who also
sulfate reducing bacteria. So far as their taxonomic elucidated the role of Thioploca community dynamics
16 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
Table 1.3 Microbiological features of the well-studied oxygen minimum zones (OMZs) sediment of the global ocean.
Microbiology or
In situ microbial molecular technique Taxonomic groups
processes detected used for decrypting responsible for in
so far (nitrogen biogeochemical situ metabolic
Sl. no Name of OMZ O2 (μM) metabolism) process process References
1 Eastern Tropical <detection Dissimilatory Seafloor imaging Thioploca Sommer et al.,
SouthPacific limit reduction of nitrate 2016; Bohlen
(ETSP) to ammonia et al., 2011
(DNRA)
Sulfur metabolism
2 Arabian Sea <detection sulfate reduction 16S rRNA gene Desulfurococcus, Fernandes et al.,
OMZ limit and partial genes Desulfurolobus, 2018
sequencing
3 Arabian Sea <detection Sulfur oxidation Metagenome, Cereibacter, Bhattacharya
OMZ limit Functional gene Guyparkeria, et al., 2020;
analysis, whole Halomonas, Schmaljohann
genome, pure Methylophaga, et al., 2001
culture isolation Pseudomonas,
Sulfitobacter
Thioploca
Methane metabolism
4 Arabian Sea <detection Anaerobic methane 16S rRNA gene – Fernandes et al.,
OMZ limit oxidation and partial genes 2018,
sequencing Bhattacharya
et al., 2021
as a NO3– reservoir and an effective barrier to H2S P, and N in the ocean (Deutsch et al., 2011), ultimately
emissions to the water column. Nevertheless, taxon- influencing the burial of organic carbon (Ruvalcaba
specific meta- omics exploration from physiographi- Baroni et al., 2020)
cally distinct marine OMZ identified a diverse bacterial
group that thus far includes Deltaproteobacteria 1.12. CONCLUSION
(Syntrophobacterales and Desulfovibrionales),
Chloroflexi, Planctomycetes, Spirochetes, Firmicutes, Marine oxygen minimum zones (OMZs) are typical
Acidobacteria, and Verrucomicrobia, etc.(Divya et al., biogeochemical milieus that play crucial roles in regu-
2010; Podlaska et al., 2012; Fernandes et al., 2018). lating the global ocean’s productivity and organic matter
burial. The OMZ sediments are key sites for C–S–N
1.11. OXYGEN MINIMUM ZONE EXPANSION cycling characterized by high labile organic matter pres-
ervation and diminished bioturbation activity, thereby
Several studies have shown that oceanic OMZs are cur- exerting a strong influence on the benthic abundance,
rently expanding as a result of global warming (e.g. diversity, and composition biota, and gas and metal
Stramma et al., 2008; Schmidtko et al., 2017; Breitburg fluxes across the sediment–water interface. The present
et al., 2018). Climate change caused by anthropogenic review has emphasized the significance of biogeochem-
emissions of CO2 leads to an increase in surface seawater ical cycling in the OMZ sediments with respect to the
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Wilkin, R.T. and Barnes, H.L. (1997). Formation processes of marine environments. Geochimica et Cosmochimica Acta 56
framboidal pyrite. Geochimica et Cosmochimica Acta 61 (2): (2): 763–774. https://doi.org/10.1016/0016-7037 (92)90096-2
323–339. https://doi.org/10.1016/S0016-7037 (96)00320-1 Zhu, M.X., Chen, K.K., Yang, G.P., et al. (2016). Sulfur and
Woebken, D., Lam, P., Kuypers, M.M. et al. (2008). A microdi- iron diagenesis in temperate unsteady sediments of the East
versity study of anammox bacteria reveals a novel Candidatus China Sea inner shelf and a comparison with tropical
Scalindua phylotype in marine oxygen minimum zones. mobile mud belts (MMBs). Journal of Geophysical Research:
Environmental Microbiology 10 (11): 3106–3119. https://doi. Biogeosciences 121 (11): 2811–2828. https://doi.org/10.1002/
org/10.1111/j.1462-2920.2008.0164 2016JG003391
2
Sedimentary Records of Present and Past Marine Sulfur Cycling
Herald Strauss
ABSTRACT
The sulfur isotopic composition of marine sediments and sedimentary rocks reveals a wealth of information
about sulfur cycling on different spatial and temporal scales. Sulfate minerals such as gypsum/anhydrite,
barite or carbonate-associated sulfate provide a temporal record of seawater evolution that reflects secular
changes in the global sulfur cycle. Dissolved porewater sulfate and sulfide, but more so sedimentary iron sulfides
and/or organic sulfur reveal details about the diagenetic evolution of marine sediments. Mass-independent
sulfur isotope anomalies have proven to be a prime recorder for the atmospheric oxygen abundance in the first
half of Earth’s history.
2.1. INTRODUCTION In our quest to unravel the global sulfur cycle, stable
sulfur isotopes have been successfully utilized to identify
Sulfur is present in the ocean-atmosphere system in mul- potential source(s) and (microbial) processing of sulfur in
tiple forms, ranging in oxidation states from +6 to –2. It is an the sedimentary realm. Traditionally, evaporitic sulfate
essential element of life and participates in numerous micro- minerals (i.e. gypsum and anhydrite) were considered as
bially driven redox processes. In the modern ocean, dis- recorders of seawater evolution (Holser and Kaplan, 1966;
solved sulfate is the most abundant form of sulfur with a Claypool et al., 1980; Strauss, 2004). Subsequently, the
concentration of 29 mm (Canfield, 2001a). Only a few oce- analytical approach was extended to barite (Paytan et al.,
anic basins, most prominently the Black Sea, exhibit a 2004) and carbonate- associated sulfate (Kampschulte
permanent stratification of the water body characterized by and Strauss, 2004). In contrast, sedimentary pyrite was
an anoxic lower part of the water column where dissolved generally studied to investigating the presence and
sulfide is stable; such a water body is termed euxinic. Modern temporal evolution of microbial sulfate reduction, being
marine sediments contain dissolved sulfate and sulfide in an ancient process of microbially driven sulfur cycling
their porewaters, the latter resulting from microbially driven (Strauss, 1997, 1999; Canfield, 2001a; Shen et al., 2001).
sulfate reduction. Dissolved sulfide generally combines with Only in more recent years has there been an increase in
reduced iron to form sedimentary iron sulfide (Rickard and sulfur isotope studies of organic- bound sulfur, recog-
Luther, 2007). In ancient sedimentary rocks, sulfur is most nizing that sulfurization of organic matter is one way of
prominently present as sulfate mineral (gypsum, anhydrite, increasing the preservation of sedimentary organic
barite), as carbonate-associated s ulfate (CAS), as sedimen- matter, while also acknowledging the fact that organic-
tary iron sulfide (pyrite), or as organic-bound sulfur. bound sulfur reflects part of the sedimentary sulfur
budget that is largely neglected in global mass balance
Institut für Geologie und Paläontologie, Westfälische calculations (Werne et al., 2004). In the past 20 years, the
Wilhelms-Universität Münster, Corrensstraße 24, 48149 Münster, analysis of all four stable sulfur isotopes have been instru-
Germany (hstrauss@uni-muenster.de) mental in reconstructing the temporal evolution of atmo-
ORCiD code: 0000-0003-2639-1225 spheric oxygen abundance during the early part of Earth’s
Systems Biogeochemistry of Major Marine Biomes, First Edition. Edited by Aninda Mazumdar and Wriddhiman Ghosh.
© 2022 John Wiley & Sons, Inc. Published 2022 by John Wiley & Sons, Inc.
27
28 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
history, specifically defining the first major rise in atmo- 2.3. THE MODERN MARINE REALM
spheric oxygen abundance some 2.3 billion years ago
(Farquhar et al., 2000). Another application for such Today’s ocean is the largest modern sedimentary reser-
multiple sulfur isotope approach has been the voir, with sulfur present as dissolved sulfate. A sulfate
differentiation of microbial processes of sulfur cycling concentration of 29 mm is distributed homogeneously in
(Johnston et al., 2005; Zerkle et al., 2009). the lateral and vertical dimension because of a residence
This review will address key aspects of the global sulfur time (8.7 × 106 years) that is substantially longer than the
cycle, as recorded by the sulfur isotopic composition and oceanic mixing time (around 103 years) (Holland, 1984).
archived in marine sediments. Starting with the modern Dissolved oceanic sulfate exhibits a stable sulfur isotopic
ocean, different aspects of sulfur cycling on different composition of +21‰ (δ34S vs. VCDT; Rees et al., 1978)
spatial and temporal scales archived in the marine sedi- and shows no discernible variations with depth (Figure 2.1)
mentary sulfur isotope record will be explored. based on a compilation of data from several ocean basins
(Böttcher et al., 2007). More recent accounts for the sulfur
2.2. STABLE SULFUR ISOTOPES – A TOOL isotopic composition of seawater sulfate were presented by
FOR RECONSTRUCTING SPATIAL AND TEMPORAL Tostevin et al. (2014), who reported an average δ34S value
CHANGES IN SULFUR CYCLING of +21.24 ± 0.44‰ and a Δ33S value of 0.050 ± 0.014‰,
based on seawater sulfate samples from the eastern margin
Sulfur has four stable isotopes, 32S, 33S, 34S, and 36S, with of the Pacific Ocean, offshore from the California and
average natural abundances of 94.93%, 0.76%, 4.29%, Peru coastlines, and by Johnston et al. (2014), who reported
0.02%, respectively (Coplen et al., 2002). Results are com- an average δ34S value of +21.15 ± 0.15‰ and a Δ33S value
monly expressed in the delta notation, placing the ratio of 0.048 ± 0.006‰ for water samples from oxygen
of the two major isotopes 32S and 34S in a sample in rela- minimum zones in the Pacific and Atlantic Ocean.
tion to this ratio in a reference material and normalizing Significant deviations from the very homogeneous δ34S
it to the Vienna Canon Diablo Troilite standard (VCDT; value of +21‰ exist solely in marginal seas as a result of
Krouse and Coplen, 1997): the in-mixing of isotopically variable but generally less
34
S-enriched riverine sulfate, showing a global average δ34S
34 34 value of 4.4 ± 4.5‰ (Burke et al., 2018).
S ‰ S / 32 SSa / 34 S / 32 SSt – 1 1000
Depth profiles through the upper part of the marine
sedimentary column indicate that the dissolved sulfate
Despite early studies recording all four stable sulfur
isotopes (Hulston and Thode, 1965), only the last 20
0
years has there been an increasing number of multiple
sulfur isotope studies that also recorded the minor 33S
and 36S isotopes. Acknowledging the fact that modern
1
day physical, chemical and biologically mediated
reactions are generally associated with a mass-
dependent fractionation in sulfur isotopes, these pub-
Water depth [m]
10
lications express their results as deviation from the 21.00 ± 0.13
calculated mass- dependent isotope fractionation 21.24 ± 0.44
(Farquhar et al., 2000): 100
20.99 ± 0.24 21.15 ± 0.15
33 33 34 0.515
S ‰ S – 1000 1 S / 1000 –1
1000
36 36 34 1.90 10000
S ‰ S – 1000 1 S / 1000 –1 . 20 21 22
δ34SSO4 [‰, VCDT]
Early sulfur isotope measurements in marine sedi- Figure 2.1 Homogeneous sulfur isotopic composition of modern
ments were published by, for example, Thode et al. seawater sulfate as compiled by Rees et al. (1978), Böttcher
(1949, 1953) and Szabo et al. (1950) and provided the et al. (2007), Tostevin et al. (2014), and Johnston et al. (2014).
basis for the application of sulfur isotopes in earth and Vertical lines represent depth ranges of samples studied. VCDT:
life sciences. Vienna Canon Diablo Troilite standard.
Sedimentary Records of Present and Past Marine Sulfur Cycling 29
load contained in the porewater provides the principal microbial sulfate reduction and subsequent precipitation
electron acceptor for the microbially mediated minerali- as iron sulfide (Canfield, 2001a; Rickard and Luther,
zation of sedimentary organic matter via organoclastic 2007). Microbial sulfate reduction, more specifically
sulfate reduction, once dissolved oxygen has been fully organoclastic sulfate reduction, is associated with a
consumed (Jørgensen, 1982). At depths, ranging from distinct isotopic fractionation of up to 70‰, generally
millimeter to meter scale, the concentration of porewater displaying a δ34S value for the resulting sulfide that is
sulfate becomes limited because microbial sulfate con- 34
S-depleted compared with the parental sulfate. The mag-
sumption exceeds sulfate supply via diffusion. The nitude in isotopic fractionation is determined by a multi-
decrease in sulfate concentration with depth is accompa- tude of factors including the availability and reactivity of
nied by an increase in its δ34S value (Figure 2.2a). The sulfate and organic substrate as well as physicochemical
residual porewater sulfate becomes progressively enriched boundary conditions, such as temperature. Milestones in
in 34S due to the preferential utilization of sulfate contain- our understanding in this respect were published by
ing the light 32S isotope during microbial sulfate reduction. Kaplan and Rittenberg (1964), Canfield (2001b), Detmers
In addition to organoclastic sulfate reduction, numerous et al. (2001), and more recently by Johnston et al. (2007),
studies (Jørgensen et al., 2004; Peketi et al., 2012; Lin Sim et al. (2011), Leavitt et al. (2013), and Wing and
et al., 2016) have revealed the complete consumption of Halevy (2014).
porewater sulfate at depth when upwards diffusing (bio- Questions in studying marine sedimentary pyrite with
genic) methane is oxidized at the expense of sulfate. A sulfur isotopes center on identifying the principle
consortium of methanotrophic archaea and sulfate processes related to its formation. Depth records for dis-
reducing bacteria (Boetius et al., 2000) pursues this reac- solved sulfide in porewater but more so for iron monosul-
tion. Termed sulfate- driven anaerobic oxidation of fides and disulfides in ancient sedimentary rocks (and
methane (SO4-AOM), this reaction frequently defines a elemental and organic sulfur, if preserved) provide a
distinct reaction zone at depth termed the sulfate– detailed record of sediment diagenesis. Important
methane transition zone (SMTZ; Borowski et al., 1996). supplementary information includes detailed petro-
Thereby, the methane flux determines the depth of the graphic examination of pyrite morphology, distinguish-
SMTZ (Figure 2.2b). In the sedimentary column SO4- ing early diagenetic framboidal pyrite from late diagenetic
AOM is recorded by abundant sedimentary (biogenic) overgrowth or late-stage euhedral crystals (Figure 2.3), as
pyrite that exhibits distinctly positive sulfur isotope well as additional sediment geochemical data (e.g. organic
values (Borowski et al., 2013; Lin et al., 2016; for further carbon content, iron speciation).
details, see text below). In a series of publications, Lin et al. (2016, 2017) con-
Modern marine sediments, i.e. sediments deposited from vincingly argued for a spatio-temporal sequence of diage-
a bottom water containing dissolved oxygen, contain on netic sulfur cycling in marine sediments involving both
average 0.6 weight per cent of sulfur (Goldhaber, 2003), organoclastic sulfate reduction and sulfate-driven anaer-
generally present as sedimentary pyrite and attributed to obic methane oxidation. Conclusions are based on
δ34S [‰]
– 0 + sulfate
n
A B
fusio
dif
Sulfate Reduction Zone
SO 4
Sulfate Reduction Zone
δ34Ssulfate
SMTZ
δ34Ssulfide
methane flux
SO4 [mM]
0
Figure 2.2 (a) Simplified depth distribution of changes in porewater sulfate concentration and sulfur isotopic com-
position of dissolved sulfate and sulfide as a consequence of progressive microbial sulfate reduction. (b) Depth
distribution of sulfate as a consequence of an upwards methane flux of difference intensity. SMTZ: sulfate methane
transition zone (Modified from Borowski et al., 1996).
30 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
10 μm 5 μm 20 μm
Figure 2.3 Different generations of sedimentary pyrite with early diagenetic framboidal pyrite overgrown by late(r)
diagenetic pyrite (SEM image courtesy of Zhiyong Lin).
respective evidence from geochemical and isotopic data importantly, however, strongly 34S- enriched sulfur iso-
(Figure 2.4). Porewater sulfate concentration decreases tope values characterize this pyrite, suggesting rapid sul-
with increasing depth,. Sedimentary pyrite that was fate consumption through SO4-AOM, thereby exceeding
chemically extracted from bulk rock (chromium reducible sulfate replenishment via diffusion. In addition, different
sulfur: CRS) exhibits a strongly negative sulfur isotopic degrees of 34S-enrichment became apparent when com-
composition that clearly indicates a biological origin via paring the sulfur isotope results from different analytical
organoclastic sulfate reduction (OSR). At greater depth, approaches (chromium reducible sulfur extracted from
the decrease in dissolved sulfate concentration overlaps bulk rock, hand-picked pyrite, different generations of
with an increase in methane concentration. This overlap pyrite ranging from early diagenetic framboids to late
defines the SMTZ that is frequently characterized by a diagenetic pyrite overgrowth studied via secondary ion
sudden increase in sedimentary pyrite abundance. More microprobe analysis, SIMS), including some of the most
(a) (b)
Sulfate [mmol/L]
0 10 20 30
0 0
overgrowths
overgrowths
Sediment depth [cmbsf]
500 500
SO4
600 CH4 600
Figure 2.4 (a) Variations in δ34S for chromium reducible sulfur from bulk rock extraction (CRS blue line) and differ-
entiated for early to late stage diagenetic pyrite exhibiting different morphologies. The dashed line separates a
zone to the left which is suggested to be dominated by organoclastic sulfate reduction (OSR) and a zone to the
right suggested to be dominated by sulfate-driven anaerobic oxidation of methane (SO4-AOM). (b) Depth profiles
for dissolved sulfate and methane concentrations from porewater. The gray field indicates the depth, which
exhibits sulfate-driven anaerobic oxidation of methane. (Modified from Lin et al., 2016.)
Sedimentary Records of Present and Past Marine Sulfur Cycling 31
positive δ34S values ever reported for sedimentary pyrite 2.4. OCEANIC SULFATE AND ITS EVOLUTION
(up to +115‰). Comparable results, i.e. a substantial THROUGH TIME
sulfur isotopic variation at the (sub)millimeter scale of up
to 75‰, was reported from modern microbial mat sys- Seawater sulfate is our prime recorder of secular
tems (Fike et al., 2009) as well as for Proterozoic (Present changes in global sulfur cycling. Abundance and sulfur
et al., 2018) and even Archean sediments (Marin- isotopic composition of oceanic sulfate reflect the deli-
Carbonne et al., 2019). cate balance between inputs and outputs. Principal input
By including the minor sulfur isotopes 33S and 36S parameters are the riverine delivery of sulfate from
(with results expressed as Δ33S and Δ36S values), oxidative continental weathering of sulfide and the disso-
Lin et al. (2017) were able to clearly distinguish the lution of sulfate as well as the interaction of seawater and
involvement of different microbially driven processes, ocean crustal rocks, most prominently exhibited at sub-
i.e. sulfate reduction, disproportionation of sulfur marine hydrothermal vent sites along mid-ocean ridges,
intermediates and (partial) sulfide oxidation. Moreover, island arcs and back-arc settings. Dissolved sulfate leaves
distinctly different data populations became apparent the ocean via precipitation of sulfate minerals or through
in a cross-plot of Δ33Spy – Δ33SSO4 vs. δ34Spy – δ34SSO4 microbially driven sulfate reduction and subsequent pre-
(Figure 2.5), allowing to distinguish sedimentary pyrite cipitation of the resulting hydrogen sulfide as iron sulfide
that formed via OSR vs. pyrite that formed as a result or its incorporation into organic matter. In a simplified
of SO4-AOM. Most recently, Jørgensen et al. (2019) isotope mass balance
further advanced our understanding about spatiotem-
poral variations in the importance of organoclastic 34
Sinput fsulfide 34
Ssulfide 1– f 34
Ssulfate
sulfide
sulfate reduction vs. sulfate-driven anaerobic oxidation
of methane.
Studies such as those by Lin et al. (2016, 2017) clearly these two principal output functions (i.e. sulfate precipi-
indicate the sometimes substantial complexity in sedi- tation and biogenic sulfide formation) are balanced
ment diagenesis that is recorded by sulfur isotopes. In against an overall input function that supposedly reflects
terms of its application, the high variability in δ34S and average crustal sulfur and that is generally considered to
additional information obtained from Δ33S offers a strong be invariable through time (Holser et al., 1988; for recent
potential for unraveling this complexity. Yet, how detailed discussions, see Halevy et al., 2012 and Canfield, 2013).
a respective (hi)story unveils strongly depends on the As the precipitation of a sulfate mineral is not associ-
detail of the analytical approach. ated with a substantial sulfur isotope fractionation (Raab
0.5
DH-CL 11
Sulfide-shallow part
Sulfide-background
0.4 HD 109
Sulfide-shallow part DH-CL 11
∆33 Spyrite-∆33Ssulfate [‰]
40 % SO4-AOM
Sulfide-background 20%
0.3 derived pyrite
0%
60 %
n
tio
0.2 na red
tr io qui
po re
ro is
i sp ion OSR field where
d t
re ida disproportionation or sulfide
0.1 he ox oxidation could occur
w
d de
el lfi but is not required
Fi r su
70 % o
–0.1
–100 –80 –60 –40 –20 0 20
δ34Spyrite-δ34Ssulfate [‰]
Figure 2.5 Differentiation of different forms of microbial sulfur cycling as demonstrated by multiple sulfur isotopes.
(Redrawn after Lin et al., 2017). OSR: organoclastic sulfate reduction; SO4-AOM: sulfate-driven anaerobic
oxidation of methane; DH-CL 11 and HD 109 are drill cores.
32 SYSTEMS BIOGEOCHEMISTRY OF MAJOR MARINE BIOMES
and Spiro, 1991), the sulfur isotopic composition of it is important to independently constrain the marine
marine evaporitic sulfates faithfully records the isotopic nature of carbonates used, such as marine biogenic car-
composition of dissolved oceanic sulfate. In considering bonates. Similar to the modern ocean, limited variability
the simplified sulfur isotope mass balance, the temporal in δ34SCAS can be expected for multiple time-equivalent
evolution in δ34Ssulfate has been interpreted as a reflection carbonate samples, as carbonate associated sulfate would
of secular changes in the balance between the principal reflect the homogeneous nature of the seawater sulfate
output functions from the oceanic reservoir. sulfur isotopic composition at any given time in Earth
Early accounts of the sulfur isotopic composition of oce- history. However, recent studies have reported significant
anic sulfate through time were published by Nielsen (1965) differences in δ34SCAS for different sedimentary carbonate
and Holser and Kaplan (1966), followed by the seminal components within an individual stratigraphic unit
paper from Claypool et al. (1980). These studies used evap- (Present et al., 2015), indicating that diagenesis can exert
oritic sulfate minerals (generally gypsum or anhydrite) for control on the δ34SCAS value of carbonates (Present et al.,
reconstructing the temporal changes in δ34Ssulfate, thereby 2019). Consequently, a prerequisite for successfully
acknowledging the absence of a substantial isotope effect applying δ34SCAS is a thorough evaluation of the diage-
during mineral precipitation. Two observations were most netic history of the carbonate (Fichtner et al., 2017), with
apparent from these studies: the sulfur isotopic composi- a rigid analytical procedure (Wotte et al., 2012) being
tion of oceanic sulfate was not homogeneous through time mandatory.
and the temporal record was not continuous, with gaps that Kampschulte and Strauss (2004) published the first
reflect the nondeposition of evaporites or their loss during CAS-based sulfur isotope time series of oceanic sulfate
weathering (Strauss, 1997). Barite was considered as an for the Phanerozoic. Clear differences were discernible
alternative early on (Goodfellow and Johansson, 1984), such as high δ34Ssulfate values in the early Paleozoic and
and our present understanding about secular changes in the minimum δ34Ssulfate values during Permian times. While
sulfur isotopic composition of oceanic sulfate during the the overall temporal trend was comparable to observa-
past 130 million years is indeed based on a high-resolution tions published earlier and based on evaporite minerals,
record of marine barite (Paytan et al., 2004). this new time series of the sulfur isotopic composition
The most promising and widely utilized alternative, of Phanerozoic seawater sulfate showed substantially
however, is carbonate-associated sulfate (CAS). During more internal structure because of its significantly
carbonate precipitation, sulfate is incorporated into the better temporal resolution. Numerous studies on
crystal lattice in concentrations of tens to thousands of δ34Ssulfate, published in the past 15 years, have provided a
parts per million (Busenberg and Plummer, 1985; Staudt detailed view of the secular variations in the sulfur
and Schoonen, 1995), and this sulfate archives the sulfur isotopic composition through time; these have most
isotopic composition of the dissolved sulfate at the time recently been compiled by Crockford et al (2019) extend-
of carbonate precipitation. As with true sulfate minerals, ing the record back into the Proterozoic (Figure 2.6).
60
50
40
δ34S [‰, VCDT]
30
20
10
–10
2500 2000 1500 1000 500 0
Age [Ma]
Figure 2.6 Secular variations in δ34S for carbonate-associated sulfate (CAS: blue circles) and evaporitic sulfate
(orange circles). Red circles indicate 10 million year average values (0–500 Ma), 50 million-year average values
(500–1000 Ma) and 100 million-year average values (1100–2600 Ma) calculated from δ34SCAS. (Modified from
Crockford et al., 2019.)
Sedimentary Records of Present and Past Marine Sulfur Cycling 33
A first- order interpretation, based on isotope mass (nanomole level) using multi-collector induced coupled
balance considerations, views these temporal variations plasma mass-spectrometry (MC-ICP-MS) (Craddock
as a reflection of changes in pyrite burial (fsulfide), with et al., 2008; Paris et al., 2013). Applications of the latter
high rates in the early Paleozoic, minimum rates in the will allow for an even higher temporal resolution for rock
late Paleozoic and its transition into the Mesozoic, and successions across critical time boundaries than presently
an evolution towards modern values. However, addi- available.
tional information can be gathered from a detailed mul-
tiple sulfur isotope record through time. 2.5. PYRITE AND ORGANIC-BOUND SULFUR
Based on complimentary records of δ34Ssulfate and AS RECORDERS OF MICROBIAL SULFUR
Δ33Ssulfate for Paleozoic and Mesozoic carbonate- CYCLING IN THE PAST
associated sulfate, and considering the temporal record
of δ34Ssulfide through time, Wu et al. (2010, 2014) proposed Being a key element of life, sulfur is taken up by plants
significant changes in the operational mode of the global and microorganisms via assimilatory reduction of inor-
sulfur cycle through the Phanerozoic. Most notably, these ganic sulfate with little sulfur isotope fractionation asso-
authors highlighted a change in the magnitude of isotopic ciated. In contrast, dissimilatory sulfate reduction is an
fractionation between sulfate and sulfide from lower energy- yielding process associated with the release of
values in the Paleozoic to higher values in the Cenozoic. hydrogen sulfide. Kaplan and Rittenberg (1964) in their
Moreover, they argue for a change in the isotopic compo- seminal paper on isotopic fractionation associated with
sition of the input function (δ34Sin) to the global sulfur dissimilatory sulfate reduction established the foundation
cycle (i.e. the continental weathering signature), as previ- for the application of sulfur isotopes as recorder of
ously discussed by Canfield (2013). Wu et al. (2014) attri- microbial activities in the geological past. Hartmann and
bute this to changes in the Earth surface sulfur pool, Nielsen (1969) were the first to apply this new under-
notably a rapid recycling of newly formed sulfate min- standing that dissimilatory sulfate reduction is generally
erals. Discernible shorter-term fluctuations (on the tens associated with a substantial isotopic discrimination
of million years scale) in the temporal records are inter- against the heavy 34S isotope in their study of marine sed-
preted as reflecting changes in the intensity of sulfide iments. Subsequently, a negative δ34S value measured for
oxidation during cycling of sulfur and/or by rapid a sedimentary pyrite or at least a sizeable apparent
changes in sulfur influx to the oceans and its associated isotopic fractionation between the parental sulfate (pre-
sulfur isotopes. Recently, Crockford et al. (2019) com- served in the rock record as evaporite) and resulting sedi-
piled and substantially extended the time series of δ34Ssulfate mentary (iron) sulfide, as observed in natural marine
and Δ33Ssulfate for seawater sulfate (and δ18Osulfate and settings as well as in the early laboratory experiments,
Δ17Osulfate) back in time into the late Archean, with new were considered as evidence for the biogenicity of a sedi-
data mostly derived from gypsum or anhydrite. As in mentary sulfide: it provided the basis for tracing micro-
other previous studies, the observed large scale secular bial sulfur cycling through time.
variations in the sulfur isotopic composition of seawater Since the 1970s, numerous studies explored the antiq-
sulfate are attributed to temporal changes in burial/ uity of microbial sulfur cycling by studying sedimentary
weathering of sedimentary sulfide. Moreover, these time rocks as far back as 3.8 billion years ago (Monster et al.,
series substantiate earlier suggestions (Melezhik et al., 1979). Time series of δ34S values for pyrite in sedimentary
2005) that the operational mode of the sulfur cycle as we rocks were presented, among others, by Schidlowski et al.
know it today and, in particular, the continental (1983), Hayes et al. (1992), Strauss (1999), and Canfield
weathering and riverine delivery of sulfate to the ocean (2001a). Reviewing sulfur isotope research targeting sedi-
only commenced in the early Proterozoic, postdating the mentary sulfides with the objective of identifying micro-
first significant rise in atmospheric oxygen. bial sulfur cycling and trace it through time two milestone
Two additional aspects related to the study of carbonate- discoveries in the past 20 years by Sim et al. (2011) and
associated sulfate are noteworthy as they likely reflect on Pellerin et al. (2019) are most notable.
future research. An increasing number of studies have In 1964, Kaplan and Rittenberg reported that a
focused on critical time boundaries such as the Permian– maximum sulfur isotopic fractionation of 46‰ associ-
Triassic transition (Schobben et al., 2015, 2017), and care- ated with dissimilatory sulfate reduction, modern, and
ful work has resulted in high-resolution profiles across ancient marine sediments and sedimentary rocks fre-
prominent rock successions allowing for a renewed view quently yielded a larger isotopic difference between a
on the causes and consequences of short-term perturba- measured sedimentary pyrite and the coeval seawater
tions of global sulfur cycling. The second aspect pertains sulfate (Strauss, 1997). This enigmatic difference between
to an analytical improvement, notably the measurement nature and experiment persisted for nearly 30 years
of sulfur isotopes at very low sulfate concentrations until a new type of microbial sulfur metabolism termed
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UUSI KOULU.
Lauri Kivekäs oli tavallaan ollut eetillinen filosofi hänkin — hän oli
omaksunut maailmankatsomuksen, jonka tunnussana oli
kansallisuusaate. Hänen filosofiansa lähti elävästä elämästä
semmoisenaan, ja sillä oli selvät, joskin rohkeat ja hyvin
käytännölliset päämäärät. Lauri Kivekäs oli tyypillinen suomalaisen
luonteen edustaja, raju, häikäilemätön, rohkea, kiihkeä, jos oli
kysymys taistelusta, mutta pehmeä kuin vaha, helposti ohjattava,
empivä, jos hänelle haasteltiin lemmen kieltä. Tälle miehelleen Ida
Aalberg puhui melkein aina rakkauden sanoja, ja heidän
avioliitossaan ei ollut syviä, ainakaan maailmankatsomukseen ja
luonteitten erilaisuuteen perustuvia ristiriitoja. Heidän ristiriitansa
olivat tavallisen todellisuuselämän ristiriitoja, niistä puuttui
teoreettinen pohja.
Alexander Uexküll-Gyllenband oli ikivanhan saksalaisen suvun
jäsen. Hän tunsi itsensä germaaniksi, mutta hänen esi-isänsä olivat
lähes parisataa vuotta toimineet slaavilaisuuden päämaassa,
Venäjällä. Kansallisuusaate ei hänelle muodostunut miksikään
kipeäksi persoonalliseksi kysymykseksi, siihen nähden olivat jo esi-
isät saaneet tehdä ne kompromissinsa, joita yksityisen ihmisen
elämänonni edellyttää. Ida Aalbergin toinen mies, vapaaherra
Alexander Uexküll-Gyllenband, oli kaikilta taipumuksiltaan
kosmopoliitti. Hän katsoi elämää ja sen ilmiöitä yleisinhimilliseltä
näkökulmalta.
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