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1467Full Download pdf of (eBook PDF) Microbiology: A Systems Approach 6th Edition By Marjorie Kelly all chapter
1467Full Download pdf of (eBook PDF) Microbiology: A Systems Approach 6th Edition By Marjorie Kelly all chapter
1467Full Download pdf of (eBook PDF) Microbiology: A Systems Approach 6th Edition By Marjorie Kelly all chapter
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SIXTH EDITION
Instructor Resources
Lecture Capture
Customize your lecture with tools such as PowerPoint®
McGraw-Hill Tegrity® Tegrity in Connect is a tool that makes
presentations, animations, and art from the textbook.
class time available 24/7 by automatically capturing every
An instructor’s manual for the text saves you time in
lecture. With a simple one-click, start-and-stop process, you
developing your course.
capture all computer screens and corresponding audio in a
format that is easy to search, frame by frame. Students can
replay any part of any class with easy-to-use, browser-based
viewing on a PC, Mac, or other mobile device.
viii
All McGraw-Hill Connect content is tagged to Learning Outcomes for each chapter as well as topic, section, Bloom’s
Level, and ASM Curriculum Guidelines to assist you in customizing assignments and in reporting on your students’
performance against these points. This will enhance your ability to assess student learning in your courses by
allowing you to align your learning activities to peer-reviewed standards from an international organization.
ix
Need a lab manual for your microbiology course? Customize any of these manuals—
add your text material—and Create your perfect solution!
McGraw-Hill Education offers several lab manuals for the microbiology course. Contact your McGraw-Hill Education learning
technology representative for packaging options with any of our lab manuals.
xi
Chapter Opening Case Files That Teach Students How to Judge Popular Media
Articles About Science!
Each chapter opens with a revolutionary kind of case study. Titled “Media Under The Microscope,” these are summaries of
actual news items about microbiology topics. Students are walked through the steps of judging the relative accuracy of the
popular media stories. Chapter by chapter, they learn how to critically assess the journalistic accounts. They encounter the
principles of causation vs. correlation, biological plausibility, and the importance of not overstating experimental results. It is a
critical need among the public today, and this textbook addresses it.
xii
Figures
Many difficult microbiological concepts are
best portrayed by breaking them down into
stages. These figures show each step clearly
marked with an orange, numbered circle and
correlated to accompanying narrative to benefit
all types of learners. The accompanying legend
provides additional explanation.
xiii
Systematic Presentation of
Disease-Causing Organisms
Microbiology: A Systems Approach takes a unique approach to
diseases by organizing microbial agents under the heading of the
disease condition they cause. After all of them are covered, the
agents are summarized in a comparative table. Every condition gets
a table, whether there is one possible cause or a dozen. Through
this approach, students study how diseases affect patients—the
way future health care professionals will encounter them in their
jobs. A summary table follows the textual discussion of each
disease and summarizes the characteristics of agents that can
cause that disease.
xiv
Disease Connection
Sometimes it is difficult for students to see the relevance of
basic concepts to their chosen professions. So the basic
science chapters contain Disease Connections, very short
boxes that relate esoteric topics
such as pH and growth phase to
clinical situations (H. pylori and
M. tuberculosis, in these examples).
Insight Readings
Each chapter includes a
Microbiome Insight box and a
Clinical Insight box. The
Microbiome Insight boxes are a
way to emphasize the important
and revolutionary ways the recent
findings influence almost
everything we know about
human health.
xv
xvi
SmartGrid
This innovative learning tool distributes
chapter material among the American Society
for Microbiology’s six main curricular concepts,
plus the competency of scientific thinking.
Each of the seven areas is probed at three
different Bloom’s levels. The resulting
21-question grid can be assigned by column
(all multiple-choice questions about each core
concept, for example) or by row (all questions
related to evolution, but at increasing Bloom’s
level). The highest Bloom’s level questions can
easily be assigned as a group project or
presentation topic.
xvii
Visual Connections
Visual Connections questions take images
and concepts learned in previous chapters
and ask students to apply that knowledge
to concepts newly learned in the current
chapter. This helps students evaluate
information in new contexts and enhances
learning.
xviii
Chapter 2: The Chemistry of Biology Chapter 13: Microbe-Human Interactions: Health and
•• New elements named Disease
•• Case study on why saline might not be ideal for hydration •• Added the need to negotiate the host microbiome as one
(hint: it’s the chloride!) of the steps required for microbes to cause disease
•• Several new figures
Chapter 3: Tools of the Laboratory
•• In this chapter, there is typically a lot of terminology that Chapter 14: Host Defenses I: Overview and Nonspecific
is used to describe phenomena, yet the terms themselves Defenses
are not defined (such as “what is growth?”); rewritten •• Changed overall organization to more logical sequence
with an eye to what the students do not yet know
Chapter 15: Host Defenses II: Specific Immunity and
•• New infographic to illustrate the “Five I’s”
Immunization
Chapter 4: Bacteria and Archaea •• New infographic about the properties of specific immunity
•• New infographics that make different categories of •• Information about vaccines for noninfectious conditions
bacteria more visual and CAR-T treatments
xix
xx
We are most grateful to our students who continually teach us how to more effectively communicate this
subject. All the professors who reviewed manuscript or sent e-mails with feedback were our close allies
as well, especially when they were liberal in their criticism. Jennifer Lusk contributed invaluable content to the
text. Our minders at McGraw-Hill Education are paragons of patience and professionalism: Darlene Schueller
is the best editor in the business, which makes it all the more surprising that she continues to work with us on
book after book. Other members of our McGraw-Hill Education team upon whom we lean heavily are Lauren
Vondra, Kristine Rellihan, Jim Connely, Jessica Portz, Beth Blech, Rachael Hillebrand, Lori Hancock, and Betsy
Blumenthal.
—Kelly Cowan
—Heidi Smith
xxi
CHAPTER 1 Compounds 38
2.2 Macromolecules: Superstructures of Life 39
Carbohydrates: Sugars and Polysaccharides 40
The Main Themes of Microbiology 1 Lipids: Fats, Phospholipids, and Waxes 42
1.1 The Scope of Microbiology 2 Image Source
Proteins: Shapers of Life 44
1.2 The Impact of Microbes on Earth: Small The Nucleic Acids: A Cell Computer and
Organisms with a Giant Effect 4 Its Programs 46
Microbial Involvement in Shaping Our Planet 5 2.3 Cells: Where Chemicals Come to Life 48
1.3 Human Use of Microorganisms 6 Fundamental Characteristics of Cells 48
1.4 Infectious Diseases and the Human Condition 7 Media Under The Microscope Wrap-Up 49
Insight 1.1 CLINICAL: Infections of the Heroin Epidemic 9 Study Smarter: Better Together 49
Chapter Summary 50
1.5 The General Characteristics of Microorganisms 10
SmartGrid: From Knowledge to Critical Thinking 51
Cellular Organization 10
Visual Connections 52
1.6 The Historical Foundations of Microbiology 10
High Impact Study 52
The Development of the Microscope:
“Seeing Is Believing” 11
The Establishment of the Scientific Method 14
Deductive and Inductive Reasoning 14
Insight 1.2 MICROBIOME: What Is a Microbiome? 14
CHAPTER 3
The Development of Medical Microbiology 16 Tools of the Laboratory Methods for
1.7 Naming, Classifying, and Identifying Microorganisms 17 the Culturing and Microscopic Analysis Nikolay Denisov/123RF
xxii
4
Chloroplasts: Photosynthesis Machines 118
CHAPTER Ribosomes: Protein Synthesizers 118
The Cytoskeleton: A Support Network 119
Bacteria and Archaea 80 Survey of Eukaryotic Microorganisms 120
©Rich Carey/
4.1 The Bacteria 81 5.4 The Fungi 121
Shutterstock
The Structure of a Generalized Bacterial Fungal Nutrition 121
Cell 82 Organization of Microscopic Fungi 123
Bacterial Arrangements and Sizes 82 Reproductive Strategies and Spore Formation 123
Insight 4.1 CLINICAL: Biofilms Complicate Infections 82 Fungal Identification and Cultivation 124
4.2 External Structures 86 The Effects of Fungi on Humans and the Environment 125
Appendages: Cell Extensions 86 Insight 5.1 MICROBIOME: Are Eukaryotic Microorganisms
Surface Coatings: The S Layer and the Glycocalyx 89 Part of Our Microbiome? 126
4.3 The Cell Envelope: The Boundary Layer of Bacteria 90 5.5 The Protists 127
Differences in Cell Envelope Structure 91 The Algae: Photosynthetic Protists 127
Structure of the Cell Wall 91 Biology of the Protozoa 127
Cytoplasmic Membrane Structure 93 Insight 5.2 CLINICAL: Eukaryotic Pathogens: Neglected Parasitic
The Gram-Negative Outer Membrane 93 Infections 128
The Gram Stain 94 Classification of Selected Important Protozoa 130
Practical Considerations of Differences in Cell Protozoan Identification and Cultivation 131
Envelope Structure 95 Important Protozoan Pathogens 131
4.4 Bacterial Internal Structure 95 5.6 The Helminths 132
Contents of the Cell Cytoplasm 95 General Worm Morphology 133
Bacterial Endospores: An Extremely Resistant Stage 97 Life Cycles and Reproduction 133
4.5 The Archaea 99 A Helminth Cycle: The Pinworm 133
4.6 Classification Systems for Bacteria and Archaea 100 Helminth Classification and Identification 134
Insight 4.2 MICROBIOME: Archaea in the Human Microbiome 101 Distribution and Importance of Parasitic Worms 134
Taxonomic Scheme 102 Media Under The Microscope Wrap-Up 135
Diagnostic Scheme 102 Study Smarter: Better Together 135
Species and Subspecies in Bacteria and Archaea 103 Chapter Summary 136
Media Under The Microscope Wrap-Up 103 SmartGrid: From Knowledge to Critical Thinking 137
Study Smarter: Better Together 103 Visual Connections 139
Chapter Summary 104 High Impact Study 139
SmartGrid: From Knowledge to Critical Thinking 105
Visual Connections 107
High Impact Study 107 CHAPTER 6
Viruses and Prions 140
5
Daryl Benson/Getty
6.1 The Search for the Elusive Viruses 141 Images
CHAPTER
6.2 The Position of Viruses in the Biological
Eukaryotic Cells and Spectrum 142
Microorganisms 108 Andrea Migliarini/123RF 6.3 The General Structure of Viruses 142
Size Range 142
5.1 Overview of the Eukaryotes 109
Viral Components: Capsids, Envelopes,
Becoming Eukaryotic 109
and Nucleic Acids 142
5.2 Form and Function of the Eukaryotic Cell: External
Structures and Boundary Structures 110 Insight 6.1 MICROBIOME: Are Viruses Part of the
Microbiome? 144
Appendages for Movement: Cilia and Flagella 111
The Glycocalyx 112 6.4 How Viruses Are Classified and Named 150
Boundary Structures 113 6.5 Modes of Viral Multiplication 150
5.3 Form and Function of the Eukaryotic Cell: Internal Multiplication Cycles in Animal Viruses 150
Structures 114 Viruses That Infect Bacteria 157
The Nucleus: The Control Center 114 Insight 6.2 CLINICAL: Phage Therapy in Cystic Fibrosis 159
Endoplasmic Reticulum: A Passageway in the Cell 114 6.6 Techniques in Cultivating and Identifying Animal
Golgi Apparatus: A Packaging Machine 116 Viruses 160
Nucleus, Endoplasmic Reticulum, and Golgi Apparatus: Using Live Animal Inoculation 160
Nature’s Assembly Line 116 Using Bird Embryos 161
Mitochondria: Energy Generators of the Cell 118 Using Cell (Tissue) Culture Techniques 161
6.7 Viruses and Human Health 162 8.2 The Pursuit and Utilization of Energy 206
6.8 Prions and Other Noncellular Infectious Agents 162 Energy in Cells 206
Media Under The Microscope Wrap-Up 163 A Closer Look at Oxidation and Reduction 206
Study Smarter: Better Together 163 Adenosine Triphosphate: Metabolic Money 207
Chapter Summary 164 8.3 Catabolism: Getting Materials and Energy 208
SmartGrid: From Knowledge to Critical Thinking 165 Overview of Catabolism 208
Visual Connections 167 Aerobic Respiration 209
High Impact Study 168 Pyruvic Acid: A Central Metabolite 211
The Krebs Cycle: A Carbon and Energy Wheel 211
The Respiratory Chain: Electron Transport and Oxidative
8
The Gene-Protein Connection 237
CHAPTER The Major Participants in Transcription
and Translation 237
Microbial Metabolism The Chemical Insight 9.1 CLINICAL: Micro RNA: Tiny but Mighty 238
Crossroads of Life 197 Image Source/Getty Transcription: The First Stage of Gene Expression 240
Images
8.1 The Metabolism of Microbes 198 Translation: The Second Stage of Gene Expression 241
Enzymes: Catalyzing the Chemical Reactions of Life 199 Eukaryotic Transcription and Translation: Similar Yet
Regulation of Enzymatic Activity and Metabolic Different 243
Pathways 203 The Genetics of Animal Viruses 245
11
9.3 Genetic Regulation of Protein Synthesis 246
The Lactose Operon: A Model for Inducible Gene CHAPTER
Regulation in Bacteria 246
A Repressible Operon 248 Physical and Chemical Control
Phase Variation 249 of Microbes 288 Brian Hagiwara/
Stockbyte/Getty
Antibiotics That Affect Transcription and Translation 249 11.1 Controlling Microorganisms 289 Images
9.4 DNA Recombination Events 249 General Considerations in Microbial Control 289
Horizontal Gene Transfer in Bacteria 249 Relative Resistance of Microbial Forms 289
Pathogenicity Islands: Special “Gifts” Methods of Microbial Control 290
of Horizontal Gene Transfer? 254 What Is Microbial Death? 292
9.5 Mutations: Changes in the Genetic Code 255 How Antimicrobial Agents Work:
Causes of Mutations 255 Their Modes of Action 294
Categories of Mutations 256 11.2 Methods of Physical Control 295
Insight 9.2 MICROBIOME: Customizing the Microbiome 256 Heat as an Agent of Microbial Control 295
Repair of Mutations 257 The Effects of Cold and Desiccation 298
The Ames Test 257 Radiation as a Microbial Control Agent 299
Positive and Negative Effects of Mutations 257 Insight 11.1 CLINICAL: Hospitals Using New Tools Against
Media Under The Microscope Wrap-Up 259 Bacteria 302
Study Smarter: Better Together 259 Decontamination by Filtration: Techniques
Chapter Summary 260 for Removing Microbes 302
SmartGrid: From Knowledge to Critical Thinking 261 Osmotic Pressure 303
Visual Connections 262 11.3 Chemical Agents in Microbial Control 303
High Impact Study 263 Selecting a Microbicidal Chemical 304
Factors Affecting the Microbicidal Activity of Chemicals 304
10
Germicidal Categories According
to Chemical Group 304
CHAPTER
Insight 11.2 MICROBIOME: Hand Hygiene 308
Genetic Analysis and Genetic Media Under The Microscope Wrap-Up 311
Engineering 264 Digital Vision/Getty Study Smarter: Better Together 311
Images
10.1 Tools and Techniques of Genetic Chapter Summary 312
Engineering 265 SmartGrid: From Knowledge to Critical Thinking 313
DNA: The Raw Material 265 Visual Connections 315
Systems for Dicing, Splicing, and Reversing Nucleic High Impact Study 315
Acids 267
12
Analysis of DNA 268
Insight 10.1 MICROBIOME: Host Genetics and the CHAPTER
Microbiome 270
Methods in Recombinant DNA Technology: How to Imitate Antimicrobial Treatment 316
Nature 272 12.1 Principles of Antimicrobial Therapy 317 milos luzanin / Alamy;
10.2 Products of Recombinant DNA Technology 275 Gary He/McGraw-Hill
The Origins of Antimicrobial Drugs 318 Education
Genetically Modified Organisms 275 Starting Treatment 318
10.3 Genetic Treatments: Introducing DNA into the Body 276 Identifying the Agent 318
Gene Therapy 276 Testing for the Drug Susceptibility of
Small RNAs as Medicine 277 Microorganisms 318
CRISPR 277 The Art and Science of Choosing an Antimicrobial
Insight 10.2 CLINICAL: Gene Therapy Restoring Sight 278 Drug 321
10.4 DNA Analysis: Maps and Profiles 278 12.2 Interactions Between Drug and Microbe 322
Genome Sequencing 278 Mechanisms of Drug Action 322
Profiling 280 12.3 Survey of Major Antimicrobial Drug Groups 325
Measuring Gene Expression: Microarrays 282 Antibacterial Drugs Targeting the Cell Wall 325
Media Under The Microscope Wrap-Up 283 Antibacterial Drugs Targeting Protein Synthesis 327
Study Smarter: Better Together 284 Antibacterial Drugs Targeting Folic Acid Synthesis 329
Chapter Summary 285 Antibacterial Drugs Targeting DNA or RNA 329
SmartGrid: From Knowledge to Critical Thinking 286 Antibacterial Drugs Targeting Cell Membranes 329
Visual Connections 287 Antibiotics and Biofilms 329
High Impact Study 287 Agents to Treat Fungal Infections 330
My Appointments in the U. C. V.
On the organization of the U. C. V. in 1892, I received the
appointment by Lieutenant-General Cabell, who was elected
Commander of the Trans-Mississippi Department, of Quartermaster-
General of the Trans-Mississippi Department, with the rank of
Brigadier-General. On receipt of my commission, issued by General
John B. Gordon, one morning, while opening the package, Mr. C. A.
Keating was looking on and on my being surprised at such
promotion, never having had notice of General Cabell’s appointment,
Keating asked me what I was going to do about it? I told him that I
was going to turn it down, that I did not think I deserved any such
promotion, besides I feared it would take a great deal of my valuable
time out of business, when he insisted on my accepting it, which I
still refused. He made me promise to take the document home to my
children, saying that they had more interest perhaps, in such an
honor than I had and if they were willing to have me turn it down he
would have nothing further to say. In connection with this, he asked a
question, “Tell me of a Confederate soldier in this community that
has done as much for the needy Confederates as you have and is
more entitled to it than you are?”
I took the document home, as I had promised him, to show to my
children and when I suggested to them that I intended to turn it down
they would not hear to it, saying that they were as much interested in
the matter and would appreciate it as a great honor conferred on
them, as well as myself, when I finally had to yield in the matter and
accepted the appointment, which I have never had cause to regret,
though it was a heavy tax on my purse and time, which latter
properly belonged to C. A. Keating, to say nothing of using his
stenographer, etc., all of which he cheerfully contributed and is
entitled to the credit.
Having served in this capacity for a number of years, I was finally
elected to the command of the Fourth Brigade, composed of the
principal Camps of North Texas, with a membership of about five
thousand, which forced me to resign the office of Quartermaster
General and accept the high honor, which I very much appreciated.
Serving in this capacity a year, I decided to decline re-election on
account of deficiency in hearing, which almost disqualified me from
presiding over this body at its annual meeting and soon after, was
appointed by General Stephen D. Lee, Assistant Adjutant-General
on his staff, with the rank of Brigadier-General and which
appointment I have had from every successive commander and I
may, perhaps, hold until death. I certainly appreciate these honors
conferred on me by my Confederate comrades, more perhaps than
anything that has ever fallen to my lot. This closes my connection
with the Confederate U. C. V. organization; many of the details of its
works I do not care to record herein, as they might appear too much
of egotism.
MISCELLANEOUS CORRESPONDENCE ON CONFEDERATE
MATTERS
War Department,
Vicksburg National Military Park Commission,
Vicksburg, Miss.
January 14, 1909.
General H. W. Graber,
Dallas, Texas.
My Dear Sir: I highly appreciated and greatly enjoyed
reading your good letter of the 12th instant, and its
inclosures, one of which is herewith returned. Needless for
me to say to you that I am in heartiest sympathy with the
generous, patriotic and American sentiments so well
expressed in the “Concurrent Resolution” of the two Houses
of the Indiana Legislature, Session of 1899. Ten years
earlier, in 1889, in an address to the veterans of my
regiment (24th Iowa Infantry) in reunion assembled, I said,
in part:
“In forming the characters and shaping the lives of the
future citizens of this great Republic, we fondly hope that
the unselfish devotion to duty and the unshaken valor of the
volunteer soldier will be a potent influence for good; that his
heroism will live in song and story and through all the years
to come, be a challenge to patriotism, above the din of party
strife ringing loud and clear as bugles that blow for battle.
Nor do we forget that our late foes were brave men and
gallant soldiers. Their valor, like the valor of the men of the
North, illustrates and adorns the character of the American
citizen soldier. This character, tempered and proved in the
crucible of battle, is the pledge and sure prophecy of the
greatness of our common country. Looking into the future,
may we not say of the coming American citizen, ‘His shall
be larger manhood’ because of the heroic example of the
men who conquered with Grant and Sherman and the no
less heroic example of the men who surrendered with Lee
and Johnston. Of this coming American, may we not predict
that, where need is, he will know that ‘not suffering but faint
heart is worst of woes.’ In the nobler destiny of our country,
in the larger and stronger character of its people, will be
found the final compensation for all the suffering and all the
losses of the war.”
Please keep me closely informed in regard to the
prospects for the greatly desired Texas appropriation for the
Vicksburg Park. Command and direct me whenever I can
help in any way.
Very cordially yours,
WM. T. RIGBY, Chairman.
CHAPTER XXXVII