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Kohler Et Al 2023 The Functional Significance of Mitochondrial Respiratory Chain Supercomplexes
Kohler Et Al 2023 The Functional Significance of Mitochondrial Respiratory Chain Supercomplexes
ª 2023 The Authors. Published under the terms of the CC BY 4.0 license. EMBO reports 24: e57092 | 2023 1 of 14
EMBO reports Andreas Kohler et al
Glycolysis β-oxidation
Acetyl CoA
Citrate
NADH Oxaloacetate cis-Aconitate
NAD+
Isocitrate
Malate Tricarboxylic acid cycle NAD+
TCA
(TCA) NADH
Fumarate α-Ketoglutarate
FADH2
NAD+
FAD
Succinate
Succinyl CoA
NADH
GTP GDP
QH2 QH2 2Q
IMM
Q Q 2QH2
2H+ 2H+ 2.7 H+
1/2 O2
4H+
H 2O
4H+
Succinate Fumarate +
+ 2H+ 2H
NAD++ H+ ADP + Pi
NADH ATP
Figure 1. The tricarboxylic acid cycle (TCA) and mitochondrial respiratory chain.
Upper Panel: Acetyl-CoA is a central metabolite produced via various metabolic reaction pathways. It can subsequently be utilized in the TCA, were among others sev-
eral molecules of NADH and FADH2 are generated. Lower Panel: Electrons from these metabolites can be subsequently utilized by the mitochondrial respiratory chain
to convert energy in the form of ATP. Structures of the individual respiratory chain complexes and the electron carrier cytochrome c are shown, as well as respective
redox reactions (PDB CI: 6ZKC; PDB CII: 1ZP0; PDB CIII: 6Q9E; PDB CIV and CytC: 5IY5; PDB CV: 5ARA). IMM, inner mitochondrial membrane; IMS, intermembrane space;
OMM, outer mitochondrial membrane.
electrochemical gradient across the IMM formed by the transfer of models. The solid-state model postulates that all components of the
protons from the mitochondrial matrix into the IMS is used by the MRC (including Q and Cytc) form a single unit, which can catalyze
ATP synthase (CV), which phosphorylates ADP with inorganic the entire process of mitochondrial respiration. Thereby, Q and Cytc
phosphate to ATP, whereby the flow of protons back into the mediate electron transfer via enclosed pathways, never exchanging
matrix powers ATP synthesis (Mitchell, 1975) by a rotary mecha- with the exterior of the unit (Ragan & Heron, 1978). On the con-
nism of the ATP synthase (Fig 1). trary, the liquid-state model proposes that individual complexes
reside independently in the IMM. Likewise, Q and Cytc diffuse freely
Connectivity of mitochondrial respiratory chain complexes and randomly to transfer electrons between the individual com-
Despite detailed insights into the fundamental structural and cata- plexes (Hochli & Hackenbrock, 1976; Hackenbrock et al, 1986). The
lytic properties of the individual MRC complexes, available since liquid-state model received extensive experimental support, mostly
last century, their overall structural organization and physiological owing to the observation that individual MRC complexes could be
implications of that organization have been extensively revisited purified in active forms and that the small mobile electron carriers
over the last 20 years and are still debated today (Milenkovic et al, are freely diffusing and in large stoichiometric excess over MRC
2017). Historically, two opposing models for how the complexes are complexes. However, the solid-state model gained new experimen-
functionally connected were proposed early on, namely, the “solid- tal support. Through the use of mild detergents for mitochondrial
state” and the “liquid-state” (also referred to as “fluid-state”) membrane solubilization and the establishment of blue native
polyacrylamide gel electrophoresis, it was demonstrated that MRC Supercomplexes are also formed between CIII and CIV without
complexes form supramolecular assemblies, termed respiratory CI, with the stoichiometries CIII2 + CIV2 or CIII2 + CIV, respectively
chain supercomplexes (SCs) (Cruciat et al, 2000; Sch€ agger & (Fig 2A). Whereas CIII forms an obligate homodimer (CIII2), CIV
Pfeiffer, 2000). SCs were shown to exist in varying stoichiometry can occur in its monomeric, as well as in its dimeric (CIV2) form.
in different species, ranging from bacteria to plants, fungi, and
animals. Because they exist widely in multiple life forms, they The respirasomes
must confer specific, selectable advantages to organisms. In this A common feature of respirasomes is the curving of the membrane
review, we provide a comprehensive overview of the various arm of CI around the CIII dimer, which can already be observed in
forms of mitochondrial SCs, their biogenesis, and their structure the isolated CI + CIII2 complex (Letts et al, 2019). The overall struc-
and discuss the current understanding of the functional roles ture of these SCs was similar to the respirasome configuration, but
of SCs. showed at least six open states (inactive form) of CI and one closed
state (active form) (Letts et al, 2019). In structural studies for both
ovine and bovine respirasomes, two different classes had significant
Structures and assembly of different respiratory chain variations of the CIV position (Letts et al, 2016; Sousa et al, 2016).
complexes For the ovine respirasome structure, “loose” (active) and “tight”
A
CI + CIII2 + CIV CI + CIII2 CIII2 + CIV2 CIII2 + CIV
ND5
UQCRH
NDUFB9
C D
Qcr8 Cox5
CL
Cor1 SCAF1
Rip1 Cox5
Sub9
Figure 2.
conformations present intermediate states of respirasome assembly (Sch€agger & Pfeiffer, 2000). The first elucidated high-resolution
or that some configurations (e.g., the loose form of the respirasome) structure for mitochondrial CIII2 + CIV came from Saccharomyces
are sample preparation artifacts (Letts et al, 2016). cerevisiae (Hartley et al, 2019; Rathore et al, 2019). The association
The exact mechanism of respirasome formation, particularly between CIII2 and CIV occurs via protein–protein interactions
involving SC assembly factors, is still a matter of debate. The CIV between the CIII subunit Cor1 and the CIV subunit Cox5, stabilizing
subunit COX7A has two tissue-specific isoforms, namely, COX7A1 the complex from the matrix side, and a protein–lipid–protein inter-
in the heart and skeletal muscles and COX7A2 in the liver. However, action between Cor1, cardiolipin, and the CIV subunit Rip1 (Fig 2C).
both isoforms can be found in heart-derived mitochondria, whereas Whereas alanine substitutions in Cor1 abolished the formation of
COX7A2 is found in liver mitochondria only. Further, a homolog of SCs, the reduction of cardiolipin content via deletion of the cardio-
COX7A2, COX7A2L, or SCAF1 was described, initially thought to be lipin synthase Crd1 had no direct consequence on SC formation
essential for both respirasome and CIII2 + CIV SC formation (Ikeda (Pfeiffer et al, 2003), showing that the protein–protein interaction
et al, 2013; Lapuente-Brun et al, 2013). It was postulated that SCAF1 between Cor1 and Cox5 is necessary and sufficient for the formation
is required to form respirasomes in all tissues except in the heart of CIII2 + CIV SCs in yeast (Berndtsson et al, 2020). However, the
and skeletal muscle (Cogliati et al, 2016). However, overwhelming yeast and mammalian CIII2 + CIV differ substantially in their struc-
evidence shows that SCAF1 is only required for CIII2 + CIV SC for- ture. In yeast, CIV binds to CIII2 at the same site as CI does in the
Physiological functions of supercomplexes the overall pathway (and hence, the flux control coefficient is 1),
this step has complete control over the pathway. Such an analysis
The physiological functions of SCs remain controversial, despite has been performed for the NADH oxidation pathway with the
more than two decades of research (Sch€agger & Pfeiffer, 2000). Sev- inhibitors rotenone and mucidin, and it was shown that CI and CIII
eral hypotheses regarding their physiological significance were behave as a single functioning unit (Blanchi et al, 2004). In support
made and will be discussed in this section. of this model, Q and Cytc were found in respirasomes and shown to
be able to transfer electrons from NADH to O2 (Acın-Perez
Free diffusion versus substrate channeling et al, 2008). It was therefore proposed that neither Q nor Cytc form
The random collision model suggests that the electron transport homogeneous pools, but instead, each respirasome contains a dedi-
within mitochondria is a diffusion-based process. The mechanistic cated small pool of Q and Cytc, which are not exchanged and allow
role of Q to transport electrons from NADH or succinate oxidation to a localized electron transfer via substrate channeling (Lapuente-
CIII was established in the 1960s, when it was demonstrated that a Brun et al, 2013; Fig 3A and B). Substrate channeling in complexes
surprisingly high concentration of Q was found in the IMM, where it of enzymes that act sequentially in a pathway is a process where a
behaves as a pool, binding electrons (and protons) to the Q head- specific substrate is transferred from one enzymatic activity to the
group, and thereby helps to connect electron flow in the MRC next without allowing free diffusion of the substrate into the bulk
A
Free diffusion Substrate channeling
exchange with pool no exchange with pool
CI Complex I
Q Q
Q Q Q Q Q Q CIII Complex III
Q Q
Q Q Q Q
CIV Complex IV
Q
Q Coenzyme Q
Cytochrome c
C
CI + CIII2 + CIV CI + CIII2 CIII2 + CIV
Figure 3.
(Maldonado et al, 2021) do not contain barriers restricting diffusion process (Stuchebrukhov et al, 2020). Interestingly, further work
of Q or Cytc away from the complexes, features that would be neces- performed with yeast mitochondria in combination with cryo-EM
sary for substrate channeling. Direct tunneling of electrons between suggests that this kinetic advantage might be conferred by 2D diffu-
CIII2 + CIV in the MRC can also be excluded because of a too-large sion of Cytc between CIII2 and CIV in SCs rather than 3D diffusion
distance (> 6 nm) between the respective Cytc binding sites between separated, individual complexes (Moe et al, 2021) (Fig 3B).
(Rathore et al, 2019; Vercellino & Sazanov, 2021), allowing electron In line with a previous proposal (Perez-Mejıas et al, 2019), it was
transfer only by a mobile pool of Cytc. However, bacterial SCs do suggested that CIII2 + CIV SC formation provides a negatively
contain covalently bound Cytc, clearly allowing substrate channel- charged surface patch on top of this SC, on which the positively
ing to transfer electrons from CIII to CIV (Daldal et al, 2003; Gong charged Cytc can “roll”. These structural properties can also be
et al, 2018; Kao et al, 2022). found in the mammalian version of this complex (Vercellino &
Sazanov, 2021). Hence, this mechanisms might present an alterna-
Efficiency of electron transfer and competitive fitness tive to substrate channeling, for which diffusion of Cytc within the
While substrate channeling in a strict definition can be excluded as SC is favored by electrostatic interactions, but still allows a free
a possibility to explain the occurrence of SC in mitochondria, it is exchange with the universal soluble Cytc pool (Moe et al, 2021;
still feasible that a bioenergetic advantage of SC formation can Vercellino & Sazanov, 2021, 2022; Fig 3B). However, the signifi-
as the cooperative assembly model (Fernandez-Vizarra & Ugalde, improved bioenergetics; however, possible SC-independent roles
2022). of SCAF1 in fat metabolism in fish were not fully discarded.
Two more recent studies have added support to the concept of
Mitochondrial respiratory chain organization and MRC organization-dependent metabolic remodeling. One study
metabolic adaptation showed that two separate MRC organizations co-exist in human
The plasticity model of mammalian MRC organization proposes that cells and post-mitotic tissues, which the authors called C-MRC and
individual complexes assemble into SCs in a dynamic manner to S-MRC. These are defined by the preferential expression of the CIV
adapt to changing cellular metabolic needs (Acın-Perez et al, 2008). COX7A isoforms, COX7A2 and SCAF1 (Fernandez-Vizarra et al,
However, despite the variety of MRC complexes distribution in 2022), respectively. The SCAF1-dependent S-MRC organization is
free form and SCs observed in different cell types and tissues characterized by the presence of the SCAF1-containing respirasome,
(Lapuente-Brun et al, 2013), the data reflect steady-state levels and which accounts for approximately 50% of total CIII and CIV levels.
the dynamic nature of the MRC organization has not been experi- At the same time, the remaining CIII and CIV are equally distributed
mentally demonstrated. Alternatively, adaptation to the cellular between the CIII2 + CIV SC and free complexes. On the contrary,
energetic requirements could be provided by the existence of inter- the COX7A2-dependent C-MRC organization displays a relatively
connected assembly pathways, where incorporation of late assem- low amount of the COX7A2-containing respirasome, no CIII2 + CIV
mouse model, where it was also shown that SCAF1 and SCAF1-
In need of answers
containing SCs are induced upon exercise, specifically in the skeletal
muscle, in a manner independent of PGC1a (Benegiamo et al, • To fully unravel the functional interplay of respiratory chain com-
2022). Taken together, these studies support the conclusion that plexes in SCs and its mechanistic benefit, it might be necessary to
SCAF1 and SC levels correlate with metabolic fitness (Fig 3C), reconstitute purified SCs into proteoliposomes to study their perfor-
mance in a minimal system, free from confounding secondary
although the cellular context may modulate the nuances of this
variables.
correlation. • The functional connectivity of the respiratory chain by mobile elec-
tron carriers is likely a key aspect of SC/respirasome formation. It
Other proposed functions of respiratory chain supercomplexes would be important to determine the absolute and relative concen-
Most studies on SCs mention that the limitation of oxidative stress trations of Cytc or Q, and RCs in order to test how they might deter-
mine the dependency on SC/respirasome formation to achieve
could be a function of these assemblies. However, only very limited
optimal electron transport rates.
evidence for such a role was provided. CI and CIII are the main pro- • While this manuscript was under editorial proof, an article was
duction sites of reactive oxygen species in mitochondria (Mur- published where a more than 50% reduction in SC and respirasome
phy, 2009), and hence, it was postulated that the formation of the formation was achieved in a mouse model, without overly perturbing
respiration or physiology (Milenkovic et al, 2023). Hence, it would be
respirasome somehow alleviates oxidative stress from these sites.
desirable for future studies to generate mutants in higher organisms,
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