2012 - Fascinating Cyclophanes With A Bright Futurew Peter J. Cragg and Kushal Sharma - C1cs15164a

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Cite this: Chem. Soc. Rev., 2012, 41, 597–607

www.rsc.org/csr TUTORIAL REVIEW


Pillar[5]arenes: fascinating cyclophanes with a bright futurew
Peter J. Cragg* and Kushal Sharma
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Received 14th June 2011


DOI: 10.1039/c1cs15164a

Pillar[5]arenes are [15]paracyclophane derivatives consisting of 1,4-disubstituted hydroquinones


linked by methylene bridges in the 2,5-positions. The first report of these novel macrocycles was
in 2008, when 1,4-dimethoxypillar[5]arene was prepared in 22% yield, and subsequent
improvements in synthetic methods have allowed the number of derivatives to expand
significantly. In addition to D5 symmetric pillar[5]arenes, asymmetric pillar[5]arenes with two
different substituents in the 1- and 4-positions and copillar[5]arenes consisting of two different
repeat units in a 4 : 1 ratio have been synthesised. Crystallographic, computational and
spectroscopic studies are starting to shed light on the compounds’ unusual inclusion phenomena,
from gelation and transportation of water through nanotubes to the formation of chromogenic
rotaxanes. Applications as molecular sensors are starting to appear with a focus on guest
detection by fluorescence quenching. This tutorial review will provide a summary of research into
the pillar[5]arenes since their recent discovery.

Introduction Pellagrin in 18994 and cyclodextrins observed by Villiers in


1891.5 Calixarenes, resorcinarenes and calixpyrroles all date
It is rare that chemists can announce the arrival of a new class back to Baeyer’s work on phenol-formaldehyde chemistry in
of synthetic, functional macrocycles. Crown ethers date back the 1870’s and 1880’s.6,7 It came as a surprise when, in 2008, a
to Pedersen’s work in 19671 and phthalocyanines to the new class of macrocycles, the pillar[n]arenes, appeared in the
discoveries made by Dandridge2 in the 1920’s. Cucurbiturils literature.8 In the short time since their discovery the chemistry
were first prepared in 1905,3 metacyclophanes reported by of these fascinating macrocycles has developed rapidly with
new synthetic routes pursued, a wealth of inclusion pheno-
School of Pharmacy and Biomolecular Sciences, Huxley Building, mena described, and the preparation of the first pillar[5]arene-
University of Brighton, Brighton BN2 4GJ, UK. based molecular sensor. Their unusual symmetry has led
E-mail: P.J.Cragg@brighton.ac.uk; Fax: +44 1273 642647;
Tel: +44 1273 642037 to some distinctive geometrical features and stereochemistry
w Electronic supplementary information (ESI) available: conforma- with implications for their use in molecular recognition. This
tional analysis of pillar[5]arenes, through-the-annulus rotation tutorial review will provide a summary of research into the
mechanisms and a note on cyclophane synthesis. See DOI: 10.1039/
c1cs15164a
cyclopentameric pillar[5]arenes.

Peter J. Cragg started his career Kushal Sharma received his BSc
in macrocyclic chemistry as a (Hons) in Pharmaceutical and
graduate student in the Atwood Chemical Sciences from the
group at the University of University of Brighton before
Alabama. After a year as a post- spending a year in industrial
doctoral researcher at SUNY formulation. In 2010 he started
Stony Brook, and a further postgraduate research in the
18 months at Reading Univer- University of Brighton’s
sity, he joined the University of Huxley Building laboratories
Brighton in 1993 where he is focusing on artificial ion
currently Reader in Supramole- channels incorporating calix[4]-
cular and Bioinorganic Chemis- arenes, oxacalix[3]arenes and
try. His research interests pillar[5]arenes.
include biomimetic artificial ion
Peter J. Cragg channels, computational chemis- Kushal Sharma
try and macrocyclic synthesis.

This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 597–607 597
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Structures, conformers and chirality


Pillar[n]arenes, named by Ogoshi and Nakamoto in their
2008 paper,8 are 1,4-disubstituted [1n]paracyclophanes derived
from hydroquinones linked by methylene bridges in the 2,5-
positions. In this they are structurally related to [15]paracyclo-
phane reported in 1985 by Gribble and Nutaitis.9 [1n]Para-
cyclophanes were prepared from linear precursors terminating
in a benzyl alcohol, as shown in Scheme 1. In the case of the
linear pentamer this involved 14 steps and an overall yield
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of 13% prior to cyclisation Macrocycles were successfully Fig. 1 Cyclic hexa(p-phenylene oxide) and N-anisyl-substituted
prepared from the linear pentamer and hexamer, but not hexaaza[16]paracyclophane.
the tetramer, with [16]paracyclophane isolated in 31% yield
and [15]paracyclophane in 10% yield. The final cyclisation the manner of the calixarenes. Unlike calixarenes, formed from
step occurred via a Friedel–Crafts reaction, unusual in that 4-substituted phenols linked in the 2,6-positions, pillar[n]arenes
most routes to [1n]paracyclophanes require that one of the are cylindrical rather than conical in shape and more
aromatic rings is formed following cyclisation of a less strained closely resemble the tubular geometry of the cucurbit[n]urils.
precursor.10 Importantly, and unlike most other phenol-based macrocycles,
An alternative convergent synthesis of [15]paracyclophane pillar[n]arenes are readily functionalised on both upper and
was attempted, however, this gave an even lower yield in the lower rims. The structural similarities and differences between
final step. The authors stated that: these macrocycles are illustrated in Fig. 2.
‘‘the dismal yields obtained thus far in the final step preclude A majority of papers concerned with pillar[n]arene synthesis
a study of the p-complexing properties of [15]PCP and report the isolation of the cyclopentamer only. Cyclohexamers
[16]PCP’’9 have been prepared but always as minor products isolated in
Consequently the chemistry of these compounds was not approximately 10% yield.13 One reason for this is the degree of
pursued further. Interestingly, the authors also noted that: bond angle strain across the methylene bridge. A cyclo-
‘‘it is possible that Cannizzaro prepared [1n]PCPs as early tetramer would require an Ar–CH2–Ar bond angle of 901
as 1854’’ whereas a cyclohexamer would need one of 1201. Crystallo-
If true, it would make [1n]paracyclophanes the first synthetic graphic evidence shows that the average bond angle for the
macrocycles.w methylene bridge in dimethoxypillar[5]arene (DMpillar[5]arene)
Two other paracyclophanes deserve a mention here: is 111.31, close to the ideal 109.51 angle for sp3 hybridised
Osakada’s cyclic oligo(p-phenyleneoxide) compounds11 and carbons.8 It is also close to the ideal 1081 internal angle for an
Ito’s N-anisyl hexaaza[16]paracyclophane12 (Fig. 1). Both have unstrained pentagon. Consequently the cyclopentamer is the
the same paracyclophane structural motif but, in common main product from the macrocyclisation reactions.
with the other examples given, have no functional groups on The pillar[5]arenes have two interesting geometric
the aromatic rings. properties. Firstly, the presence of substituents in the 1- and
The pillar[n]arenes are distinct from these [1n]paracyclo- 4-positions leads to two possible planar chiral stereoisomers,
phanes by virtue of having cleavable alkoxy groups in the 1,4- Rp and Sp as shown in Fig. 3, that arise through the spatial
positions making them amenable to further functionalisation in arrangement of the out of plane substituents. Secondly,
rotation of one or more of the aromatic rings through the
macrocyclic annulus generates conformational isomers. These
conformers can be likened to those available to the better
known calix[4]arenes. Fig. 4 illustrates the possible conformers
of Rp pillar[5]arene as identified by Ogoshi and Nakamoto:14
all rings in the same orientation, one ring inverted, two
adjacent rings inverted, and two non-adjacent rings inverted.
By analogy with calixarenes these can be described as cone,
partial cone, 1,2-alternate and 1,3-alternate, respectively.
The X-ray crystal structures of DMpillar[5]arene and
pillar[5]arene in Fig. 5 show that the former is isolated in the
D5 symmetric cone conformation, as a racemic mixture of Rp
and Sp enantiomers,8 whereas the latter has lost this symmetry.15
Two of the pillar[5]arene rings have become inverted with
respect to the remaining three to give the 1,3-alternate conformer
with C1 symmetry. This scrambling of the macrocycle appears
to have occurred to allow stabilising hydrogen bonds to form.
It would therefore seem likely that any attempt to extend the
pillar[5]arene cavity of such a low symmetry compound through
Scheme 1 Synthesis of [15]paracyclophane. O-alkylation would generate a range of conformers,16 not to

598 Chem. Soc. Rev., 2012, 41, 597–607 This journal is c The Royal Society of Chemistry 2012
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Fig. 4 Pillar[5]arene conformers: (clockwise from top left) cone,


partial cone, 1,2-alternate, 1,3-alternate.

Fig. 5 X-Ray structures of DMpillar[5]arene and pillar[5]arene


(solvents removed for clarity).

the presence of a suitable catalyst. Other routes involve


cyclisation of 2,5-substituted derivatives of 1,4-dialkoxy-
Fig. 2 Representative macrocycles: (from top) funnel-shaped calix[4]- benzne and O-alkylation of unsubstituted pillar[5]arene.
arene, planar phthalocyanine, tubular cucurbit[5]uril and DMpillar[5]-
arene. Direct cyclisation of 1,4-disubstituted benzene
1,4-Dimethoxypillar[5]arene (DMpillar[5]arene) was first
synthesised through the addition of a Lewis acid to 1,4-
dimethoxybenzene and paraformaldehyde in 1,2-dichloro-
ethane (Scheme 2).8 Several candidate Lewis acids were
tested, including H2SO4, FeCl3, AlCl3, TiCl4 and SnCl4, but
BF3OEt2 gave the cleanest yield of the macrocycle. A 1 : 1 ratio
of reagents was used, together with an equimolar quantity
of the Lewis acid, and the reaction undertaken at room
temperature. Gel permeation chromatography indicated that
Fig. 3 Planar chiral pillar[5]arenes: Sp (left) and Rp (right). the optimum reaction time was over three hours. The product
was isolated as a precipitate which formed when the reac-
mention many more partially substituted compounds. As a tion mixture was poured into methanol. Recrystallisation
scaffold for further work it would make pillar[5]arene of little from CH3CN gave the product in 22% yield and X-ray
interest as reproducible syntheses would be almost impossible to
design. Fortunately this is not the case as is explained below.

Synthesis of 1,4-dialklyated pillar[5]arenes


The simplest synthesis of 1,4-disubstituted pillar[5]arenes is
through cyclisation of the monomer with paraformaldehyde in Scheme 2 Ogoshi’s synthesis of dimethoxypillar[5]arene.

This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 597–607 599
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crystallography revealed that two solvent molecules remained


inside the macrocyclic cavity in the solid state. The crystal
structure also confirmed DMpillar[5]arene to be the cyclic
pentamer. As with many other phenol-formaldehyde based
macrocycles, through-the-annulus rotation was observed.
DMpillar[5]arene rotation appears fast on the NMR timescale
Scheme 3 Cao and Meier’s synthetic approach to 1,4-dialkoxypillar[5]-
giving rise to a series of singlets in the 1H NMR, at 6.84 ppm
arenes (R = Bz, Me, n-Bu, Et, H).
(ArH), 3.76 ppm (–CH2–) and 3.71 ppm (–CH3) in CDCl3, in
the ratio of 1 : 1 : 3 with no change in signal even at !90 1C.
higher homologues are formed by other routes but not
Ogoshi and Nakamoto have since shown that alkyl
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isolated.
substituted pillar[5]arenes can be prepared by the same general
Using a similar approach Huang reported that reaction of
method to give ethoxy, n-propoxy, n-butoxy, n-pentyloxy,
1,4-diisobutoxybenzene with paraformaldehyde and HBr in
n-hexyloxy or n-dodecanoxy groups in the 1,4-positions. The
glacial acetic acid led to the formation of the bis(bromomethyl)
yields of these derivatives varied from 7 to 28%.17
derivative. Following treatment with sodium methoxide the
Ogoshi also used this method to prepare pillar[5]arenes from
resulting di(methoxymethyl) derivatives were cyclised in refluxing
1,4-bis[2(S)-methylbutoxy)benzene and a racemic mixture of
CH2Cl2, with stoichiometric 4-toluenesulfonic acid hydrate, to
the R and S enantiomers, achieving yields of 10% and 67%,
give diisobutoxypillar[5]- and [6]arene with yields of 73% and
respectively.18 The compounds were subsequently used to
5%, respectively.20 As the first two steps are essentially quanti-
investigate the planar chirality of the pillar[5]arenes.
tative the method is an attractive alternative to direct cyclisation
In a later paper, variation in the ratio of 1,4-dimethoxy-
of 1,4-dialkoxybenzene precursors, especially when bulky sub-
benzene to paraformaldehyde was investigated and a value of
stituents are involved (Scheme 4).
1 : 3 found to give DMpillar[5]arene in an improved yield of
71%.15 While this can be achieved in 3 min, optimum condi-
tions for the reaction were determined to be 30 1C for 30 min. Asymmetric pillar[5]arenes
The reaction is deceptively simple: 1,4-dimethoxybenzene is Asymmetric pillar[5]arenes, such as 1-ethoxy-4-methoxypillar[5]-
first dissolved in dichloroethane then paraformaldehyde is arene (EMpillar[5]arene), can be prepared through cyclisation of
added. The reaction mixture is stirred rapidly under nitrogen asymmetric precursors using Ogoshi’s method. Extensive NMR
before BF3OEt2 is added in a single portion. There is an studies carried out by Ogoshi and Nakamoto21 and Huang16 on
immediate change from colourless to an intense blue-green the asymmetric EMpillar[5]arene, synthesised from 1-ethoxy-4-
colour. It appears that temperature is critical as much above methoxybenzene, showed that rotation through the annulus was
30 1C an intractable dimethoxybenzene-formaldehyde poly- too slow on the variable temperature NMR timescale to be
mer is formed. Despite this, the method is attractive due to the observed. Initially, Ogoshi reported 2D ROESY data which
low cost of starting materials and the ability to significantly indicated that in solution the product was in a single form with
scale up the reaction. Upon completion the reaction mixture is all the methoxy groups coplanar and the ethoxy groups on the
poured into methanol whereupon an off-white solid precipi- opposite face rather than the expected statistical distribution
tates. The fine powder can be recrystallised from either of conformers. 1H NMR in DMSO-d6 showed that signals
CH3CN or CHCl3/acetone (1 : 1 v/v) to give a white, micro- due to the methylene bridges were split even at 110 1C whereas
crystalline solid. signals from the methyl and ethyl substituents, although
initially split, coalesced into singlets above 110 1C. A swinging
Cyclisation of 1,4-disubstituted-2,5-dimethoxymethybenzene motion of the aromatic moieties, by which they rock in and
and other derivatives out of the central cavity, was invoked as the reason for the
changes in multiplicity. Huang reported the crystal structure
Following the publication of the initial low yielding synthesis of EMpillar[5]arene (in his ESI16) which serves to illustrate the
of DMpillar[5]arene in 2008 the race was on to find an
improved route. Cao and Meier reported that refluxing
2,5-bis(benzyloxymethyl)-1,4-diethoxybenzene in CH2Cl2
containing catalytic 4-toluenesulfonic acid gave the corres-
ponding diethoxypillar[5]arene in 75% yield (Scheme 3).19 The
2,5-bis(ethoxymethyl) analogue was even more efficient giving
a 92% yield and other ethers were similarly effective. This
route was also used to prepare DMpillar[5]arene and di-n-
butylpillar[5]arene. In all cases macrocycles were formed
almost quantitatively by this method and column chromato-
graphy (petroleum ether/ethyl acetate, 40 : 1 v/v, on silica) was
used to separate the pillar[5]arenes from their pillar[6]arene
homologues.
This was the first method to generate pillar[6]arenes, however,
as residues from other routes were assumed to be unwanted Scheme 4 Huang’s general three step synthesis of 1,4-dialkoxypillar[5]-
polymers and not investigated further it may transpire that arenes.

600 Chem. Soc. Rev., 2012, 41, 597–607 This journal is c The Royal Society of Chemistry 2012
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similarities between the conformers’ properties. Despite isola- has C1 symmetry subsequent O-alkylation generates a D5 sym-
tion by chromatography and displaying a single spot by TLC, metric product exclusively which makes product isolation and
the unit cell of the crystalline compound contained two purification relatively simple.
dissimilar molecules; one a partial cone conformer and the Ogoshi and Nakamoto have shown that reaction with
other a 1,3-alternate conformer. bromoethylacetate followed by cleavage of the ester with
Another asymmetric pillar[5]arene, BMpillar[5]arene, NaH and addition of NH3, as in Scheme 6, yields a water
formed from 1-butoxy-4-methoxybenzene, was reported both soluble pillar[5]arene.22 Given the poor solubility of
by Cao and Meier19 and Huang.16 Unlike the less bulky pillar[5]arenes in general this is an important development
EMpillar[5]arene, BMpillar[5]arene gave four spots by TLC, analogous to the synthesis of the water-soluble sulfonate
each one corresponding to one of the possible conformers, derivatives in the calixarene field.23 An alternative route,
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which could be separated by chromatography and crystallised reported by Hou, can be used to prepare an amine derivative
from CH3CN19 or n-hexane.16 Huang has systematically (Scheme 6). Reduction of the acetate to the alcohol with
shown that, building up from the monomer to the cyclic LiAlH4 followed by bromination with CBr4 gave the
pentamers, there are only two routes to the cone conformer, deca(ethylbromide). Treatment with NaN3 followed by hydro-
one of which is in the Rp form and one in the Sp. The same genation in the presence of Pd/C gave the desired decaamine in
analysis shows that there are 10 routes to each of the partial an impressive 33% yield from the pillar[5]arene parent.24
cone, 1,2-alternate and 1,3-alternate conformers, half of which Ogoshi and Nakamoto synthesised pillar[5]arenes with
give rise to Rp and the other half the Sp forms. This gives a bulky methyl- and ethylcyclohexane substituents to demon-
theoretical conformer distribution of 1 : 5 : 5 : 5 which was strate that the Rp and Sp forms could be separated by HPLC
closely matched experimentally by both groups.16 using a chiral column.25 As the first proof of planar chirality
this represented a valuable application of this synthetic
approach.
Pillar[5]arene and its reactions
An alternative to cyclising appropriately 1,4-disubstituted
hydroquinone derivatives is to start from DMpillar[5]arene
and remove the methyl groups. Pillar[5]arene is readily
obtained from DMpillar[5]arene by the action of BBr3 in
CHCl3 over three days as shown in Scheme 5. Initially the
conversion was found to be 30%8 but when anhydrous chloro-
form was used this became quantitative.15 The 1H NMR for
the compound in acetone-d6 is very simple comprising singlets
at 7.96 ppm (–OH), 6.66 ppm (ArH) and 3.59 ppm (–CH2–)
in the expected 1 : 1 : 1 ratio. This indicates that, although the
1,3-alternate conformer crystallises preferentially, pillar[5]arene
remains fluxional in solution. Pillar[5]arene is consequently a
valuable starting material from which the macrocyclic frame-
work can be extended by various means, notably by reaction
with alkyl halides. Pillar[5]arene has greatly improved solubility
over its dimethoxy derivative in CH3OH, CH3CN, acetone,
DMF and DMSO which opens up a potentially vast range of
reaction conditions.
Reaction of pillar[5]arene with an alkylating agent in the
presence of a suitable base is the simplest route to extended
pillar[5]arenes. This would appear unlikely to succeed as the
steric crowding around the macrocyclic annulus should work
against complete decasubstitution. Nevertheless, deprotona-
tion with NaH followed by the addition of excess alkyl halide
has successfully produced numerous pillar[5]arenes containing
a range of substituents, from alkyl chains and cyclohexyl
groups to esters and polyethers, many of which are amenable
to further functionalisation. Although crystalline pillar[5]arene

Scheme 5 Synthesis of pillar[5]arene. Scheme 6 Carboxylate and alkylamine pillar[5]arene derivatives.

This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 597–607 601
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Surprisingly bulky groups can be introduced by this method.


Reaction of the pillar[5]arene sodium salt with an excess of
propargyl bromide gives the decasubstituted derivative in 66%
yield after workup.26 This derivative is amenable to high
yielding ‘click’ chemistry which has been employed to synthesise
the n-hexyl, benzyl and pyrenyl derivatives in 63%, 20% and
9% yield, respectively. There is a clear link between yield and
steric bulk of the substituents, nevertheless, the fact that ten
pyrenyl groups can be attached to pillar[5]arene is an impressive
feat in itself.
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Pillar[5]arene also reacts with trifluoromethane sulfonic


anhydride, as reported by Ogoshi and Nakamoto, to give
the decatriflate. Sonogashira coupling with ethynylbenzene
in the presence of a palladium catalyst yields a fluorescent
derivative, DPhEpillar[5]arene, shown in Scheme 7.27 The
extended p-surface would seem to make this pillar[5]arene an
ideal host for electron deficient and cationic guests by analogy
to 1,3-alternate calix[4]arenes.28
Some further reactions of O-alkylated pillar[5]arenes
are illustrated in Scheme 8. The first is the oxidation of
DEpillar[5]arene by Cao and Meier who used (NH4)2-
[Ce(NO3)6] to prepare pillar[5]quinone in 62% yield.13 The
authors noted that it represented the first synthesis of a
cyclic quinone and drew parallels with the structure of
cucurbit[5]uril. Two other reactions relate to the decomposi-
tion of DMpillar[5]arene. Cao reported that reaction of the
macrocycle with N-bromosuccinamide in acetone, rather than
brominating the methyl groups, cleaves the macrocycle to give
bis(4-bromo-2,5-dimethoxyphenyl)methane. Similarly, the
action of 49% nitric acid does not generate the nitrated
pillar[5]arene but the nitrated decomposition product, bis-
Scheme 8 Reactions of O-alkylated pillar[5]arenes: pillar[5]quinone
(4-nitro-2,5-dimethoxyphenyl)methane.29 These last two reac- synthesis and macrocycle cleavage.
tions reveal that the pillar[5]arenes are perhaps not as robust
as other phenolic macrocycles; calix[n]arenes readily react with
nitric acid and other reagents without decomposition. in 16% yield. X-Ray crystallography showed the compounds
to have all the aromatic rings in the pseudo D5 orientation.
Copillar[5]arenes Despite the apparently greater problems of steric crowding
interfering with its synthesis, the copillar[5]arene formed
In addition to asymmetric pillar[5]arenes it has been shown by through the 4 : 1 reaction between 1,4-dimethoxybenzene
Huang that a copillar[5]arene is formed by combining one and 1,4-di-n-octyloxybenzene gives a much higher yield of
equivalent of 1,4-dimethoxybenzene with four of 1,4-di-n- 27%. Huang also prepared a copillar[5]arene based on
butyloxybenzene, albeit in less than 10% yield.30 The 4 : 1 DMpillar[5]arene in which one 1,4-dimethoxybenzene group
mixture also forms a copillar[5]arene, this time containing four is substituted with 1-methoxy-4-(octyloxy)benzene.31 The
dimethoxybenzene groups and one di-n-butoxybenzene group, modest yield of 9% was worth the work as the compound
was able to form supramolecular polymers, discussed below.
An alternative route to copillar[5]arenes directly from
DMpillar[5]arene has been identified by Ogoshi.32 In papers
on the synthesis of pillar[5]arene it was noted that when a trace
of water was present in the CHCl3:
‘‘the reaction mixture became cloudy during the reaction,
indicating the presence of partially deprotected pillar[5]arene’’15
This observation led the group to experiment with shorter
reaction times in order to isolate the monodeprotected pillar[5]-
arene. Deprotection conditions used anhydrous CHCl3, as
before, but only 0.9 equivalents of BBr3 were added and the
reaction mixture was poured into water after 45 min. Addition
of the organic phase to methanol precipitated a mixture of
starting material and the target compound which was purified
Scheme 7 Extending pillar[5]arenes by Sonogashira coupling. by column chromatography (CHCl3 : acetone 18 : 1 v/v on silica)

602 Chem. Soc. Rev., 2012, 41, 597–607 This journal is c The Royal Society of Chemistry 2012
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to give pure monodeprotected DMpillar[5]arene in 22%


yield. Subsequent reaction with NaH and an excess of
N-(8-bromooctyl)trimethylammonium hexafluorophosphate
gave the monosubstituted copillar[5]arene in 49% yield after
workup. In acetone-d6 the alkylammonium methyl groups
appeared at 3.3 ppm, the same position as found for the free
trimethylammonium salt, whereas in CDCl3 there is a shift to
2.4 ppm indicating self-inclusion of the trimethyl group into
the macrocyclic cavity.
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X-Ray structures and what they reveal


Despite the limited solubility of most pillar[5]arene derivatives
it is fortunate that when they can be isolated from solution it is
in the form of robust crystals. X-Ray crystallography has been
invaluable in confirming conformational assumptions made
on the basis of NMR data. For example, the regular D5
structure of DMpillar[5]arene and that of pillar[5]arene,
where there is some ring inversion, could only be verified from
the crystal structures themselves. Other information of interest
to macrocyclic chemists can also be gleaned from crystallo-
graphic data, notably the dimensions of the pillar[5]arenes.
The rigid central cavity is approximately 5.5 Å across, large
enough to accommodate solvents such as CH3CN or hexane,
and anywhere from 6.5 Å deep, for pillar[5]arene, to 18 Å
deep, for a diethylacetato derivative.33 DMpillar[5]arene has Fig. 6 X-Ray structures of asymmetric pillar[5]arene constitutional
isomers: (clockwise from top left) cone, partial cone, 1,2-alternate,
external dimensions of 13 Å across by 13 Å deep and it may be
1,3-alternate (solvents and hydrogen atoms removed for clarity).
that this regular shape is partly responsible for its much lower
solubility when compared to most other pillar[5]arene deriva-
threaded through the annulus, a phenomenon that will be seen to
tives. Analysis of the all the pillar[5]arene crystal structures so
have implications for molecular recognition, as discussed later.
far published also shows that, while Rp or Sp enantiomers are
Even more interestingly, the macrocycles were in a pseudo D5
found in the asymmetric units, racemic mixtures are found in
form as shown in Fig. 7.
the unit cells due to the presence of crystallographic inversion
Huang’s copillar[5]arene comprising one 1-methoxy-4-
centres.
(octyloxy)benzene and four 1,4-dimethoxybenzene groups
The correlation between 2D 1H NMR and conformation of
can be pulled into regular rod-like nanofibres from concen-
asymmetric pillar[5]arene derivatives can be proven through
trated CHCl3 solution, which were shown by SEM to have a
the chromatographic separation and crystallisation of confor-
diameter of 9.5 mm.31 Single crystals were then grown from
mers followed by X-ray diffraction and NMR experiments on
CHCl3/CH3OH with the assumption that solvent had been
each isolated species. To illustrate this all four conformers of
included within the macrocyclic cavity. Crystallography
1-butoxy-4-methoxypillar[5]arene are shown in Fig. 6.
revealed that the n-octyl substituent of one molecule threaded
The crystal structures of these compounds were reported
through the annulus of the next so that each macrocycle was
independently by Meier19 and Huang.16 All of Meier’s
threaded onto its neighbour, as seen in Fig. 8, resulting in a
compounds crystallized with CH3CN in the central cavity
unidirectional stack of pillar[5]arenes.
but only one of Huang’s compounds, the cone conformer,
was isolated as the hexane inclusion complex. This would seem
to indicate that pillar[5]arenes are quite catholic in their choice
of guests although, as will be seen later, they are able to
discriminate in favour of alkyl diamines.
As noted above, one of the more surprising discoveries
has been that reactions involving a 4 : 1 ratio of two different
1,4-dialkoxybenzene precursors yield pillar[5]arenes incorporating
the two different subunits in a 4 : 1 ratio.30 X-Ray crystallography
has demonstrated that the 4 : 1 copillar[5]arenes, isolable by
crystallisation from CH2Cl2 or hexane, do indeed have the
proposed 4 : 1 constitution as indicated by spectroscopy and
spectrometry. When CH2Cl2 was used as a solvent, the molecules
were situated at the macrocyclic mouths and noticeable inter-
actions existed between the aromatic rings and both hydrogen Fig. 7 X-Ray structure of a 4 : 1 copillar[5]arene prepared from
and chlorine atoms of the solvent. Conversely, hexane was found 1,4-dimethoxybenzene and 1,4-dibutyloxybenzene.

This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 597–607 603
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that unfavourable interactions between methyl groups render


the D5 cone conformer most likely to represent the most stable
structure. Examination of the pillar[5]arene X-ray crystal
structure reveals a hydrogen bonding network involving eight
phenolic oxygens and four hydrogens. DMpillar[5]arene there-
fore adopts the D5 cone conformer due to steric constraints
and pillar[5]arene adopts the less symmetric 1,3-alternate
conformer through the stabilising influence of hydrogen
bonds.w
Fig. 8 An interpenetrating copillar[5]arene structural motif.
Once pillar[5]arene is deprotonated the resulting anions
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react with approaching alky halide molecules. The steric bulk


As these aggregates were not found at low concentrations it
of the resulting O-alkylated aromatic moieties forces a return
was argued that reversible self-including monomers, mutually
to the symmetric and sterically less demanding D5 cone
including dimers or cyclic interpenetrating oligomers must
conformer. Ogoshi claimed that O-alkylation occurred with-
exist under these conditions. However, at higher concen-
out inversion of planar chirality and was supported by 1H
trations (above 275 mM) linear supramolecular polymers
NMR data and crystal structures.25 Once DMpillar[5]arene
predominated.
has been demethylated only two rings need to rotate for
Diethylacetatopillar[5]arene forms several solid state
pillar[5]arene to adopt its most stable hydrogen bonded
structures, including xerogels when added to a 2 : 1 mixture
conformer. The lowest energy pathway by which pillar[5]-
of CH2Cl2 : ethyl acetate, reported by Chen and Hou.33 Some
arene can revert to the D5 cone conformer following
of these show the central cavity to be filled with eight hydrogen
O-alkylation will therefore be to rotate back to its original
bonded water molecules (Fig. 9) in a linear fashion. Hydrogen
Rp or Sp enantiomer rather than to rotate three more rings
bonding is presumed by the 2.6 Å spacing between adjacent
leading to an inversion of planar chirality. It is this simple
oxygen atoms which compares favourably with the predicted
twist of fate that makes pillar[5]arene derivatives so accessible.
behaviour of hydrogen bonded water chains within nano-
Rotational freedom of pillar[5]arenes, by analogy with the
tubes.34 These ‘water wires’ exhibited selective proton
calixarenes, has been studied, usually indirectly through the
conductance as evidenced by soaking the crystals in D2O for
broadening of host NMR signals upon guest binding, with
a week. After treatment the crystals had identical unit cell
a view to determining guest selectivity. For example,
dimensions but infrared spectroscopy revealed that O–D
DMpillar[5]arene methylene protons exhibit singlets in the
stretches were present, indicating that deuterium had replaced 1
H NMR indicating that there is no barrier to through-the
hydrogen in the solvent wires. As the analogous soaking
annulus-rotation; the fact that these signals are split for
experiment with H218O failed to show incorporation of 18O,
EMpillar[5]arene suggests strongly that rotation is inhibited
the presence of deuterium had to be due to D+/H+ exchange
for substituents larger than methoxy groups.w 1H NMR
and a subsequent ‘proton hopping’ mechanism by D+.
investigation of 1,4-dialkoxypillar[5]arenes by Ogoshi and
Nakamoto17 supports this assertion. As with the asymmetric
Rotational freedom and inclusion phenomema EMpillar[5]arene discussed earlier, a swinging motion was
invoked to explain coalescence of signals arising from the
As outlined above, reaction of pillar[5]arene with 1-bromo-2- hydrogens on the a-carbons. At low temperatures one set of
cyclohexylethane25 or ethyl bromoacetate22 returned the methylene hydrogens was presumed to be over the annulus
asymmetric macrocycle to the pseudo D5 symmetric form as while those in the para-position resided outside. As the
shown by X-ray crystallography of the former and 1H–1H temperature increased, these two sets of signals became
COSY NMR spectra of the latter. To understand why this equivalent on the NMR timescale and, as expected, coales-
happens it is first necessary to determine the steric implications cence temperatures increased with increasing lengths of alkoxy
of the conformers available to disubstituted and unsubstituted substituents, from !41 1C for the ethoxy derivatives to 39 1C
pillar[5]arenes. Consideration of DMpillar[5]arene indicates for the dodecyl derivatives. By comparison, the proton NMR
signals for the methylene bridge of the unsubstituted
pillar[5]arene coalesce at !60 1C. DMpillar[5]arene has no
hydrogen bonds to make or break so its rotation is hindered
only by interactions between methyl groups as they pass
through the annulus. Pillar[5]arene must break its hydrogen
bond network in order for the aromatic rings to rotate so its
rotation is slower on the NMR timescale. Subsequent addition
of a viologen guest to pillar[5]arene slows rotation at !30 1C
and when the temperature drops to !60 1C the macrocycle is
effectively frozen into one stable conformer.13
Pillar[5]arene derivatives from 1,4-bis[2(S)-methylbutoxy)-
benzene and a racemic mixture of R and S enantiomers were
Fig. 9 X-Ray structure of DEApillar[5]arene showing packing (top) used to probe interconversion between the two planar chiral
and water filled channels (bottom). forms. As a solution of the racemic derivative was cooled the

604 Chem. Soc. Rev., 2012, 41, 597–607 This journal is c The Royal Society of Chemistry 2012
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two enantiomers could be detected by circular dichroism and


variable temperature 1H NMR.18 As expected, racemisation
was fastest in high permitivity solvents, such as acetone, and
when the solution was heated. Cooling, use of low permitivity
solvents, or addition of guests, such as octyltrimethyl ammo-
nium hexafluorophosphate, slowed the rate of racemisation.
Similar effects were observed for DMpillar[5]arene which has
aromatic moieties that can rotate through the annulus to
switch between Rp and Sp forms. Conversion between the
two was again observed through changes in circular dichroism
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intensities.
Host–guest inclusion complexes were always going to be
important aspects of the chemistry of pillar[5]arene deriva-
tives. As with other macrocycles, pillar[5]arenes can be used as
molecular ‘beads’ and threaded onto a ‘string’ composed of
linked viologens as discussed in Ogoshi and Nakamoto’s
original paper as well as many more recent reports.8,14,35,36
The first report of pillar[5]arene inclusion behaviour used 1H
NMR to investigate the degree to which host–guest inter- Fig. 10 Inclusion complexes and rotaxanes formed from pillar[5]-
actions were present. In acetone-d6 the pyridinium and arene derivatives.
a-methylene proton signals of octylpyridinium hexafluoro-
phosphate exhibited large upfield shifts, approaching 1 ppm, repeat pattern found in the pillar[5]arenes is much more
indicating that the pyridinium group was held within the amenable to the complementary interactions between shuttles
pillar[5]arene annulus. Only the pyridinum proton signals and aromatic ‘stations’ seen in Stoddart’s benzocrown ether
in the analogous di(octyl)viologen salt were shifted which catenanes.42 Consequently there should be an interesting
indicated that the octyl substituents were external to the future for pillar[5]arene rotaxanes with the potential for them
macrocyclic cavity. Complexation was verified by MALDI- to find applications as ‘on/off’ states in molecular computers.
TOF mass spectrometry which gave signals for the doubly To date there has been no investigation of the simple
charged complex. When a di(adamantyl)viologen salt was coordination or inclusion chemistry of the pillar[5]arenes
added to pillar[5]arene no changes in spectra were observed although Lau and Yu have undertaken a computational study
as the adamantyl groups were too large to enter the macro- of pillar[n]quinones (n = 3–7) to investigate both tube forma-
cycle’s cavity. tion and anion binding.43 Calculations using density func-
Rotaxanes can be prepared using a similar method whereby tional theory predicted that the pillar[5]quinone was the most
a polymer comprised of viologen groups linked by propyl or stable of the compounds investigated, though the cyclo-
octyl chains can be used as ‘threads’ for pillar[5]arene. The tetramer, cyclohexamer and cycloheptamer were also likely
pseudorotaxane formed in this manner35 can be capped with to be stable, and that both pillar[5]- and [7]quinones should
adamantyl groups as the hydrogen bonding network between form tubular dimers. It was also determined that pillar[5]-
adjacent pillar[5]arenes holds the ‘beads’ together.36 The quinone should form stable complexes with both Cl! and Br!
resulting [3]rotaxane contains three pillar[5]arene shuttles with the former being marginally more stable (Fig. 11).
and is yellow in DMSO but turns violet upon heating. The Complexation required little structural rearrangement but
thermally induced colour change is a result of weakened would involve significant anion-p interactions. If experi-
hydrogen bonds which allows the pillar[5]arenes to shuttle mentally verifiable, the predicted Cl! binding by pillar[5]quinone
rapidly along the rotaxane axis, transferring electrons from the may have important biomimetic consequences as it has been
shuttles to the viologen groups, and stabilising a radical proposed that the hydrophobic central pore of transmembrane
cationic species. Examples of these inclusion complexes are COMP proteins formed by five interlocking polypeptide strands
shown in Fig. 10. may act as Cl! channels.44
Other quaternarised nitrogen-containing aromatic systems
can also act as molecular ‘threads’.37 Alkyl substituted para-
Applications
quats form pseudo[2]rotaxanes and even 1,4-bis(pyridinium)-
butane forms a stable 1 : 1 complex with an association In the first example of a pillar[5]arene-based sensor, Stoddart
constant in the region of 103 M!1. The closely related reported a fluorescent copillar[5]arene that is quenched when
1,4-bis[N-(N 0 -hydroimidazolium)]butane ‘thread’ forms a binding alkanediamines.45 The inspiration for this derivative
similar pseudo[2]rotaxane under pH control.38 This affinity came from the realisation that alkyldiamines were bound by
for charged species has been extended to ionic liquids, speci- DMpillar[5]arene and that this affinity could be exploited if the
fically 1-hexyl-3-methylimidazolium bromide, which forms a binding event could be reported. Initial experiments deter-
stable 1 : 1 complex with pillar[5]arene.39 mined that DMpillar[5]arene could form pseudorotaxanes
The rotaxanes and pseudorotaxanes formed by pillar[5]- with 1,8-diaminooctane: significant upfield shifts were seen
arenes are reminiscent of similar supramolecules formed with in the 1H NMR for all hydrogens in the molecule’s alkyl
cucurbituril40 and cyclodextrin41 shuttles but the aromatic backbone. Similar, though weaker, effects were observed for

This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 597–607 605
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Fig. 11 Pillar[5]quinone complexes of Cl! (left) and Br! (right).

n-octylamine. Further proof of diamine inclusion came


through the synthesis of a [2]rotaxane from the 1,8-diamino-
octane complex. The pseudorotaxane was treated with 3,5-di-
t-butylbenzaldehyde and reduced with NaBH4. The 1H NMR
spectrum of the rotaxane thread gave even more significant
shifts; the hydrogens furthest from the rotaxane caps, and
presumable those held most strongly within the DMpillar[5]-
arene shuttle, appeared at !1.2 ppm rather than 1.55 ppm.
Translation of these effects into a sensor was achieved using
the classical ‘receptor-spacer-reporter’ motif encountered in
many multifunctional or supramolecular sensors. Here the
macrocyclic cavity was the receptor and a pyrene fluorophore
gave the response. As Stoddart rightly states:
‘‘Monofunctionalization of macrocycles is a known strategy Scheme 9 Stoddart’s synthesis of a fluorescent copillar[5]arene.
for incorporating sensor capabilities without significantly
altering the binding ability of the host.’’45 however, removal of the methyl groups gave pillar[5]arene
The parent copillar[5]arene, shown in Scheme 9, was which had improved the non-aqueous solubility. Pillar[5]arene
prepared from a 4 : 1 ratio of dimethoxybenzene and 1-(2- is amenable to substitution at all ten phenolic sites following
bromoethoxy)-4-methoxybenzene. Reaction with NaN3 followed addition of base and a suitable alkylating agent with
by a copper catalysed ‘click’ reaction with 1-(propargyl- further functionalisation possible through ‘click’ chemistry.
oxymethyl)pyrene gave the fluorescent monofunctionalised Although pillar[5]arene is asymmetric due to the formation of
copillar[5]arene in an overall yield of 7%. The compound was four stabilising hydrogen bonds, reaction with alkyl halides
soluble in CH3CN/H2O (1 : 1 v/v) which allowed the forma- regenerates the D5 symmetry as a consequence of unfavour-
tion of pseudorotaxanes with alkylamines and diamines to be able steric interactions. A variety of pillar[5]arene derivatives
followed by fluorescence quenching at 395 nm. Association have been prepared and shown to have unusual properties.
constants were generally higher for a,o-alkyldiamines than for Reaction with bromoethylacetate yields a compound that
n-alkylamines although significant responses were also seen for forms water filled nanotubes; subsequent cleavage of the ester
the key biogenic polyamines, spermidine and spermine. and addition of ammonia leads to the formation of a water-
Ogoshi subsequently prepared a pyrenyl derivative26 that soluble derivative. Asymmetric pillar[5]arenes can be prepared
exhibited both monomer and excimer fluorescence, however, from asymmetric hydroquinone precursors and copillar[5]-
the excimers are temperature dependent. Excimers form at arenes form from 4 : 1 mixtures of two different precursors.
lower temperatures when the rocking mode of the pillar[5]- Monodeprotection also gives access to copillar[5]arenes
arene’s aromatic moieties is at its slowest. As the temperature through reaction at the free phenolic site. The host–guest
increases from 20 1C to 80 1C the excimer emission intensity is chemistry of the pillar[5]arenes ranges from binding simple
reduced by over 50% whereas the weak monomer emissions solvents to viologens and other quaternary amines leading to
are largely unaffected. The authors suggest that pillar[5]arene several different inclusion, and self inclusion, motifs including
fluorescence could be used to monitor guest binding as is rotaxane and pseudorotaxane formation.
currently the case with numerous calixarene derivatives.46 Following the initial discovery of these unusually symmetric
macrocycles, attention turned to the introduction of substitu-
ents that could improve functionality. One approach is to
Summary and outlook
include fluorophores that report the inclusion of guest mole-
Pillar[5]arenes are a new class of cyclophanes with similarities cules. Other methods of signalling pillar[5]arene complex
to the better known calix[n]arenes. Unlike the calix[n]arenes formation are bound to follow using the same approaches as
and many other macrocycles, the pillar[5]arenes are tubular those so effectively pioneered with other phenolic macrocycles
rather than funnel shaped compounds. The first pillar[5]arene, such as the calixarenes. However, to be fully effective there
a dimethoxy derivative with D5 symmetry, was found to be needs to be greater discrimination between guests; fortunately
poorly soluble in most solvents, and insoluble in water, research is being actively pursued on this front.

606 Chem. Soc. Rev., 2012, 41, 597–607 This journal is c The Royal Society of Chemistry 2012
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The chemistry of pillar[5]arenes, and their higher homo- 21 T. Ogoshi, K. Kitajima, T. A. Yamagishi and Y. Nakamoto, Org.
logues, has only just started to be uncovered, yet despite their Lett., 2010, 12, 636–638.
22 T. Ogoshi, M. Hashizume, T. A. Yamagishi and Y. Nakamoto,
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Acknowledgements 24 X.-B. Hu, L. Chen, W. Si, Y. Yu and J.-L. Hou, Chem. Commun.,
2011, 47, 4694–4696.
We wish to acknowledge the use of the EPSRC’s Chemical 25 T. Ogoshi, K. Masaki, R. Shiga, K. Kitajima and A. Yamagishi,
Database Service at Daresbury. KS thanks the University of Org. Lett., 2011, 13, 1264–1266.
Brighton for a Research Studentship. 26 T. Ogoshi, R. Shiga, M. Hashizume and T. Yamagishi, Chem.
Published on 29 July 2011. Downloaded by Mahidol University on 10/10/2021 11:59:25 AM.

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