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Interpretative reading of antimicrobial susceptibility testing of gram-negative


bacteria from clinical isolates

Article in Journal of Dr NTR University of Health Sciences · December 2023


DOI: 10.4103/jdrysruhs.jdrysruhs_64_23

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Original Article

Interpretative reading of antimicrobial susceptibility


testing of gram‑negative bacteria from clinical isolates
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Yazhini Karuppiah, Sulakshana S. Cheemala1, Swarajya Lakshmi1


Department of Microbiology, Apollo Institute of Medical Sciences and Research (AIMSR), Hyderabad, Telengana,
1
Department of Microbiology, Mamata Academy of Medical Sciences, Hyderabad, Telengana, India
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ABSTRACT
Introduction: The reading of antibiotic sensitivity testing goes beyond the determination of the bacterial sensitivity profile. The
interpretive reading of antibiotic susceptibility tests based on different patterns observed with beta-lactam agents is proposed in this
article, which will provide an understanding of the identification of unusual patterns, interpretation of possible resistance phenotypes
based on existing knowledge in antibiotic resistance mechanisms.
Methods: Antimicrobial susceptibility testing of 320 isolates of gram‑negative bacterial pathogens isolated from clinical samples were
performed using various phenotypic methods for the detection of resistance mechanisms. Interpretive reading of the antibiogram
data was performed to investigate the unusual resistance mechanisms from resistance phenotype.
Results: Out of 249 isolates 128 isolates (59%) were positive for cefoxitin screen. Out of these 128 isolates, 86 (67%) were
extended spectrum beta-lactamase (ESBL) co‑producers. Distorted patterns of antibiotic inhibition zones in the presence of
beta‑lactamase‑inducing agent provide information which is not otherwise evident from conventional methods.
Discussion: Distorted morphology of antibiotic inhibition zones in the presence of beta‑lactamase‑inducing agent provides
information which is not otherwise evident from routine testing by conventional methods.
Conclusion: The antibiotic susceptibility patterns observed on antimicrobial susceptibility testing (AST) plate for isolates harboring
multiple resistance can be obscure. Hence, it is important to practice mindfulness while reporting in microbiology laboratories in this
era of increased antimicrobial resistance; to promptly identify the resistant pathogens, to prevent its spread and for better patient
outcomes by selecting the most suitable drug even in resource‑limited settings.

Key words: AmpC beta‑lactamase, distorted patterns, imipenem induction, interpretative reading

INTRODUCTION intermediate, or resistant, and are analyzed taking into


account the cohort points established by the different
Antibiotic sensitivity testing evaluates the committees. However, the reading of antibiotic
susceptibility of a pathogen to an antibiotic. The sensitivity testing goes beyond the determination of
results are expressed in the categories: sensitive, the bacterial sensitivity profile. [1] The interpretive
reading of antibiotic susceptibility tests is proposed
Address for correspondence: in this article, which will provide an understanding
Dr. Yazhini Karuppiah,
Department of Microbiology, Apollo Institute of Medical Sciences of the identification of unusual patterns, interpretation
and Research (AIMSR), Hyderabad, Telengana, India. of possible resistance phenotypes based on existing
E‑mail: kyazh2306@gmail.com
This is an open access journal, and articles are distributed under the
Submitted: 31-Mar-2023 Accepted: 05-May-2023 terms of the Creative Commons Attribution‑NonCommercial‑ShareAlike
Published: 30-Dec-2023 4.0 License, which allows others to remix, tweak, and build upon the
work non‑commercially, as long as appropriate credit is given and
Access this article online
the new creations are licensed under the identical terms.
Quick Response Code:
Website:
For reprints contact: WKHLRPMedknow_reprints@wolterskluwer.com
https://journals.lww.com/jdyu
How to cite this article: Karuppiah Y, Cheemala SS,
DOI: Lakshmi S. Interpretative reading of Antimicrobial susceptibility testing
of gram‑negative bacteria from clinical isolates. J YSR Univ Health Sci
10.4103/jdrysruhs.jdrysruhs_64_23
2023;12:360-5.

360 © 2023 Journal of Dr. YSR University of Health Sciences | Published by Wolters Kluwer - Medknow
Karuppiah, et al.: Interpretative reading of antimicrobial susceptibility testing

knowledge in antibiotic resistance mechanisms, and resistance mechanisms described below, and studied
finally, a change in the therapeutic management. to understand the different resistance patterns
exhibited by these pathogens. Arrangement of
Multidrug resistant (MDR) organisms constitute antibiotic discs of all beta‑lactam agents in one
a major threat, [2] especially in hospital‑acquired AST plate with imipenem (IMP) in the center and
infections and intensive care units. Some resistance co‑amoxiclav (CAC) adjacent to the third‑generation
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mechanisms may not be identified [3] or may be cephalosporins (CTX/CTR and CAZ) to test for
missed in routine testing because they may appear induction of AmpC and ESBL; and all other classes
falsely susceptible; leading to patients receiving of drugs in another plate was designed as shown in
ineffective antibiotics and hence, contribute to the Figures 1 and 2, respectively.
nYQp/IlQrHD3i3D0OdRyi7TvSFl4Cf3VC4/OAVpDDa8KKGKV0Ymy+78= on 01/05/2024

spread of MDR pathogens in hospital settings.


Thus, microbiology laboratory and the clinical The susceptibility of the isolates to were determined
microbiologists play a very important role in by the standard disk diffusion method as per CLSI
preventing this disaster from happening by promptly M100‑Ed 32, 2022 guidelines. [6] E. coli (ATCC
identifying the resistant pathogens and guiding 25922) and K. pneumoniae (ATCC 700603) were
the treating physician to ensure proper and timely used as controls for quality. Interpretive reading of
treatment of the patient and thereby prevent the the antibiogram data was performed to investigate the
spread of resistance. unusual resistance mechanisms from the resistance
phenotype.
“Interpretative reading” requires that the isolates are
identified properly and tested with a complete set of The susceptibility to cefoxitin disk (30 μg) was used
antibiotics for it predicts unusual patterns.[4,5] This as a primary screening for AmpC beta‑lactamase
study aims to (i) analyze the susceptibility pattern for detection and the isolate with zone inhibition
individual antibiotics and to predict the underlying diameter <18 mm was selected and then tested for
resistance mechanisms; (ii) augment targeted treatment AmpC beta‑lactamase inhibition by cloxacillin.
with appropriate antibiotic based on interpretative
susceptibility results; (iii) make existing methods The test for inducibility of AmpC beta‑lactamase by
more user‑friendly to detect complex mechanisms of cefoxitin, and imipenem; and inducible resistance
antibiotic resistance by interpretative reading for use to third‑generation cephalosporins (cefotaxime and
in routine diagnostic laboratories; and (iv) pass on the ceftazidime (CAZ)) were performed by Kirby‑Bauer
benefit to the ultimate beneficiary, the patient. disk approximation (KBDA) method.[7,8] Ceftazidime
resistance is the best indicator for TEM and
MATERIALS AND METHODS SHV‑derived ESBL; whereas cefotaxime resistance is
a better indicator for CTX‑M.[9–11] And so, resistance
Institutional Ethics Committee clearance was
obtained. EC letter no. IEC/MAMS/2022/012; Dated
09/06/2022. CAC

Antimicrobial susceptibility testing of 320 isolates CTX/C CAZ


TR
of gram‑negative bacterial pathogens isolated
from clinical samples was performed using
various phenotypic methods for the detection of IMP

TABLE 1: FREQUENCIES OF ORGANISMS CFS AT

Organisms Counts % Total Cumulative %


Citrobacter spp. 3 0.9 % 0.9 %
E. coli 142 44.4 % 45.3 %
Klebsiella spp. 87 27.2 % 72.5 % CPM PIT
Morganella spp. 1 0.3 % 72.8 %
Proteus spp. 16 5.0 % 77.8 %
Figure 1: Arrangement of discs of all beta-lactam agents in one
Pseudomonas aeruginosa 71 22.2 % 100.0 % AST plate

Journal of Dr. YSR University of Health Sciences | Volume 12 | Issue 4 | October-December 2023 361
Karuppiah, et al.: Interpretative reading of antimicrobial susceptibility testing

TABLE 2: CEFOXITIN SCREEN OF THE


GRAM‑NEGATIVE ISOLATES
CX
Cefoxitin screen CX N
Organisms R 128
G CO
(excluding Pseudomonas aeruginosa) S 121

against the activity of multiple like TEM‑1,2, SHV‑1,


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MRP and ESBLs but hydrolyzed by AmpC enzyme. [13]


TOB NIT Similarly, cefepime is not hydrolyzed by AmpC, but
is a substrate for ESBL. So, cefepime resistance,
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irrespective of CTX/CTR breakpoints can be taken


AK
as an indicator of ESBL production. Pseudomonas
CIP
aeruginosa isolates were excluded from the cefoxitin
screen because identification of P.aeruginosa by
Figure 2: Classes of drugs other than beta-lactams (in no particular default implies AmpC production.
fashion) in another AST plate

In this study, out of 249 isolates (excluding


to cefotaxime/ceftriaxone (30 μg) and/or CAZ were P.aeruginosa) 128 isolates (59%) were positive for
taken as indicators for ESBL production as per CLSI cefoxitin screen, which correlated with Handa D
M100‑Ed 32, 2022 breakpoints.[6] et al.[14] Among these isolates, 42 (33%) were reported
susceptible (S) to cefotaxime and ceftazidime by
Statistical analysis was done using JAMOVI conventional KBDD testing but in KBDA method,
software (version 2.3).[12] 74% of them have shown inducible resistance, which
correlated with Xuan Qin et al.[15] who had reported
RESULTS 80% of inducible resistance. 39% of the isolates
showed a positive result upon induction, by flattening
Frequency of organisms isolated and studied is shown the inhibition zones of various beta‑lactam agents
in Table 1. Out of 249 isolates, 128 isolates (59%) adjacent to the imipenem or cefoxitin disk; while the
were positive for cefoxitin screen as shown in remaining isolates could be considered as derepressed
Table 2. The frequency of organisms positive for mutant or ESBL co‑producers.
cefoxitin screen agar include E. coli 49%; Klebsiella
spp. 46%; and Proteus spp. 7.8%. Among these 128 For all P.aeruginosa isolates, irrespective of the
isolates, 86 (67%) were ESBL co‑producers; 35% susceptibility patterns, mutational resistance is possible
of them were ESBL ceftazidimase, and 65% ESBL for any anti‑pseudomonal agent upon initiation of
broad enzyme producers. Klebsiella spp. showed treatment with the exception of colistin and possibly
a high percentage of ESBL‑producing isolates and meropenem. In addition, P. aeruginosa may also harbor
30% of them produced both ESBL and acquired additional resistance mechanisms like impermeability and
AmpC enzyme. Upon the induction test, 39% of efflux pumps wherein they show reduced susceptibility
the isolates showed a positive result by flattening to different classes of antibiotics including any one of
the inhibition zones of various beta‑lactam agents the carbapenems (either imipenem or meropenem) that
adjacent to the imipenem or cefoxitin disk. The often also affects quinolones [Table 3].
different patterns observed on AST plate and their
interpretation are decribed in Table 3 and Figures 3-6. Out of these 128 isolates, 86 (67%) were ESBL
The interpretative reading remarks for the different co‑producers. 35% of them were ESBL Ceftazidimase
isolates based on the patterns observed on antibiogram and 65% ESBL broad enzyme producers which
is described in Tables 4-7. correlated with Lafi et al.[16] Klebsiella spp. showed a
high percentage of ESBL‑producing isolates and 30%
DISCUSSION of them produced both ESBL and acquired AmpC
enzyme. Plasmid‑mediated AmpC enzymes present
Of the cephamycins, cefoxitin is used as a screening the greatest threat clinically by seriously limiting
agent for AmpC beta‑lactamse because this is stable therapeutic doses, even more so than ESBLs.[17]
362 Journal of Dr. YSR University of Health Sciences | Volume 12 | Issue 4 | October-December 2023
Karuppiah, et al.: Interpretative reading of antimicrobial susceptibility testing

TABLE 3: PATTERNS OBSERVED ON AST PLATE


Observation Interpretation Remarks
Flattening of Aztreonam zone adjacent to Imipenem Imipenem induction Mutational resistance is possible for
in P.aeruginosa isolate that is otherwise susceptible any anti‑pseudomonal drug upon
to Ceftazidime, Aztreonam, and Cefepime initiation of treatment. (except
Colistin and possibly Meropenem)
Flattening of Aztreonam and Piperacillin‑Tazobactam Imipenem induction. AmpC and ESBL co‑producer.
zones adjacent to Imipenem in an isolate that is otherwise Phantom phenomenon
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susceptible to Piperacillin‑Tazobactam and resistant (Clavulanic acid


to Cefoxitin, Aztreonam, and Ceftriaxone. induction of ESBL).
Spur/Phantom zone at the intersection of Co‑amoxiclav and Ceftriaxone.
Flattening of Cefepime zone at the intersection of Ceftazidime and ESBL Cefipime is not hydrolyzed by
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Cefoxitin zones in an isolate that is otherwise susceptible to Ceftazidime AmpC AmpC, but is a substrate for ESBL.
and Aztreonam and resistant to Cefoxitin, Cefotaxime/Ceftriaxone. Possible therapeutic
Phantom zone at the intersection of failure with Cefepime.
Piperacillin‑Tazobactam and Aztreonam.
Spur/Phantom zone adjacent to Co‑amoxiclav for Ceftriaxone and Phantom phenomenon
Cefepime in an isolate that is otherwise resistant to Cefepime and (Clavulanic acid
Ceftriaxone. induction of ESBL).

Figure 3: Imipenem induction in P.aeruginosa Figure 4: Imipenem induction and Phantom phenomenon

Figure 5: Cefoxitin induction Figure 6: Phantom phenomenon

Though from the past decade, many individual Distorted morphology of antibiotic inhibition zones
hospital antibiograms have reported only 30–40% in the presence of beta‑lactamase‑inducing agent
ESBL rates, many a times, there were cases of provides information which is not otherwise evident
treatment failure and relapse of the infection. from routine testing by conventional methods. The

Journal of Dr. YSR University of Health Sciences | Volume 12 | Issue 4 | October-December 2023 363
Karuppiah, et al.: Interpretative reading of antimicrobial susceptibility testing

distorted zone morphologies observed may be due to CONCLUSION


the action of auxillary regulatory genes, rather than
mutations in AmpC regulators or promotors.[18‑21] The antibiotic susceptibility patterns observed on the
AST plate for isolates harboring multiple resistance
For organisms known to produce an inducible can be obscure. For instance, reduced susceptibility
chromosomal AmpC beta‑lactamase[3] (Enterobacter to any of the carbapenems could be either due
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spp., Citrobacter freundii, Pseudomonas aeruginosa, to increased efflux or impermeability rather than
Serratia marcescens, Providencia spp., Morganella carbapenemase production. Hence, it is important to
morganii, etc.,), it is not necessary to perform further practice mindfulness while reporting in microbiology
testing to identify AmpC production; and by default,
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laboratory in this era of increased antimicrobial


these isolates can be assumed to be AmpC producers resistance; to promptly identify the resistant
upon identification. pathogens, to prevent its spread, and for better

TABLE 4: ESCHERICHIA COLI: PATTERNS OBSERVED ON ANTIBIOGRAM


AMP CZ CX CAZ AT CPM CAC CFS PIT IMP MRP Interpretation
R S S S S S S S S S S Classical penicillinase
R R R S S S S S S S S ESBL; Chromosomal AmpC
R R S R R R S S S S ESBL ‑ broad
R R S R R R S S S S S ESBL ‑ broad
R R R R R R R R S S S ESBL ‑ broad; Chromosomal AmpC
R R R S S S R S S S S Penicillinase; Chromosomal AmpC
R R R S R S R R R R S Plasmid acquired AmpC
R R S R R R R S S S S ESBL ‑ broad
R R S S S S S S S S S Penicillinase
R S S S S S S S S S S Classical penicillinase
R‑ Resistant, S‑ Susceptible

TABLE 5: KLEBSIELLA SPP.: PATTERNS OBSERVED ON ANTIBIOGRAM


CZ CX CTX CAZ AT CPM CFS PIT IMP MRP Interpretation
R R R R R R R R S S ESBL; Plasmid acquired AmpC
R S S S S S S R S S K1 ‑ high
R S R R R S S S S S ESBL
R R R S S S S S S S Plasmid acquired AmpC
R S S S S S S S S S Classical low SHV‑1/K1
R R S S S S S S R S ? Porin deficient
R S R R R R S S S S ESBL – broad
R‑ Resistant, S‑ Susceptible

TABLE 6: PROTEUS SPP.: PATTERNS OBSERVED ON ANTIBIOGRAM


CZ CX CTX CAZ AT CPM CFS PIT IMP MRP Interpretation
R S R R R R S S S S ESBL – broad (P. vulgaris)
R R R R R R R R S S ESBL ‑ broad;
Inducible chromosomal AmpC – derepressed (P. vulgaris)
R R S S S S S S S S AmpC ‑ plasmid acquired (P. mirabilis)
R‑ Resistant, S‑ Susceptible

TABLE 7: PSEUDOMONAS AERUGINOSA: PATTERNS OBSERVED ON ANTIBIOGRAM


CAZ CPM AT PIT IMP MRP CIP LE Interpretation
R R R R S S R S AmpC ‑ fully derepressed
R R R R R S R R AmpC ‑ fully derepressed; loss of Opr D porin
R R R S R S S S loss of Opr D porin
R R R I S R R R Increased efflux/impermeability
R R S S S I R R increased efflux/impermeability
I S R S S S S S AmpC partly derepressed
R‑ Resistant, S‑ Susceptible, I‑ Intermediate

364 Journal of Dr. YSR University of Health Sciences | Volume 12 | Issue 4 | October-December 2023
Karuppiah, et al.: Interpretative reading of antimicrobial susceptibility testing

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