Professional Documents
Culture Documents
AKU Research 2023
AKU Research 2023
AKU Research 2023
9-2023
Recommended Citation
Office of Research and Graduate Studies, "AKU Research 2023" (2023). Office of Research and Graduate
Studies. Book 16.
https://ecommons.aku.edu/research_outlook/16
Contents
1 40 years of research excellence 18 The state of East Africa’s news 32 Clinical trials update
media: confident under pressure
5 Pioneering study to address 34 AKU innovations earn patents
adversity and brain development 20 Drug-resistant fungal
infections raise alarm 38 In brief: From new rankings
6 Multi-gene testing recommended to new books
for hereditary breast cancer 23 Researchers identify low-cost
interventions for reducing 42 Research governance,
8 IED builds support for malnutrition in Kenya infrastructure and training
teacher licensing in Pakistan
24 Project tests feasibility of 44 Notable publications
12 Grading system developed by ultrasound scans in rural Kenya
AKU-EB adopted in Pakistan 52 Numbers
27 Study to examine the gut
14 One-quarter of health workers in microbiome and child health
Kenyan study show signs of
depression 29 In Tanzania, a living laboratory for
environmental research takes
16 The politics of the veil shape
in interwar Turkey
COVER IMAGE: A cortical organoid. Researchers at AKU’s Centre for Regenerative Medicine and Stem Cell Research are
growing such organoids in order to test potential therapies for neurodevelopmental disorders. See page 39 for details.
CREDITS
Editorial and Design: Office of Research and Graduate Studies and Office of Strategic Communications
Image Credits: Akbar Hakim, Akbar Moeen, Benson Githaiga, Beyer Blinder Belle, Danish Sharif, Hafiz Imtiaz Ahmed, iStock.com/
wilpunt, Maureen Ooko, Paul Kariuki Munene, Peter Pascal, Shabbir Hussen, Shahrukh Sharif, Zahur Ramji and Zoya Surani
Printer: Yaqeen Art Press PVT. Ltd
Research
Excellence
In 1983, the Aga Khan University’s founder and Chancellor, His Highness the
Aga Khan, expressed his goal of making AKU “an international university, able to
mobilise resources from other countries, to coordinate international research
and to encourage the exchange of ideas between nations.” As it celebrates
Sulaiman Shahabuddin its 40th anniversary, the evidence demonstrates the University is achieving
President and Vice-Chancellor this goal. AKU is working on the leading edge of knowledge creation, pursuing
problem-oriented research and demonstrating the “intellectual restlessness” and
“buoyant but disciplined impatience” that His Highness has urged it to express.
Research output Our 40th anniversary is an opportunity to reflect on the past, present and
future of knowledge creation and innovation at AKU. Overall, the story is one
has grown of remarkable growth. Over the last five years, AKU has received nearly 700
research grants worth $210 million from institutions such as the U.S. National
dramatically Institutes of Health, the European Research Council, the Bill & Melinda Gates
Carl Amrhein Foundation, Gavi, the Wellcome Trust, the Hilton Foundation, the ELMA
Foundation, the Government of Canada and many others. That is four times
Provost and Vice President, the funding and five times the number of grants the University received from
Academic 2000-2004. Research output has also grown dramatically. Faculty published
close to 1,500 papers in peer-reviewed journals in 2022, double the number
published in 2015. The frequency with which scholars at other institutions cite
our faculty’s work has increased seven-fold in a decade. Indeed, a number of
AKU faculty members are among the most highly cited researchers in the world
in their field. Collaboration between our researchers and scientists at other
universities has also increased significantly. To date, faculty have published
studies with colleagues at nearly 150 institutions in more than 40 countries.
Professor Salim S. Virani Is the University mobilizing resources, coordinating international research and
Vice Provost, Research encouraging the exchange of ideas across borders? The answer is a resounding “Yes.”
Proof of the quality of AKU research has come in multiple forms in recent years.
Rankings published by Shanghai Ranking, National Taiwan University and U.S. News
and World Report have placed AKU among the leading universities in Asia and
reflects its sciences and natural sciences join the University. So too will the establishment
of the Arusha Climate and Environmental Research Station in Tanzania.
research prowess
With growth has come impact. Working in close partnership with government health
workers and government health facilities, AKU researchers have saved the lives of
Individuals who require testing for cases, it may be present as a de novo cancer clinic at the Aga Khan University have been detected, limiting doctors’ who tested positive for hereditary breast The study, by Senior Instructor Fizza
hereditary breast cancer should receive variant (that is, only present in the Hospital over a three-year period. ability to treat them. Thus, multi-gene cancer, 11 had no family history of breast Akbar, Associate Professor Abida Sattar
multi-gene testing, not just testing patient as a new event). It accounts (The actual testing was outsourced testing for those who require testing for or related cancers. and Associate Professor and Chair of
for pathogenic variants in the BRCA1 for 5-10 percent of cases but is to laboratories in the United States.) hereditary breast cancer is advisable. the Division of Women and Child Health
and BRCA2 genes, according to an understudied in lower-income countries. In total, 273 of the 284 patients had The National Comprehensive Cancer Salman Kirmani, et al., was published in
AKU study that is the first of its kind in Knowing that an individual’s breast breast cancer, including four men. In total, 22 percent of those tested Network 2023 guidelines recommend Hereditary Cancer in Clinical Practice.
Pakistan. The study validated guidelines cancer is hereditary can help doctors were found to have hereditary breast genetic testing for anyone under the
that recommend genetic testing for to optimize patient management and Researchers found that 45 percent cancer, a result that is toward the higher age of 50 who develops breast cancer,
all individuals below the age of 50 who help family members to understand of patients who tested positive end of the range of results reported regardless of whether they have a
are diagnosed with breast cancer. their risk of cancer, enabling them for hereditary breast cancer had a in other countries. The median age family history of cancer. The study’s
to take better care of their health. pathogenic variant in a gene other of those who tested positive was 37.5 authors note that some clinicians only
Hereditary breast cancer is mainly than the BRCA1 and BRCA2 genes. years. Twenty-five percent of patients refer breast cancer patients for genetic
caused by pathogenic variants (that is, The study examined data on 284 If multi-gene testing had not been who tested positive had no family testing if they have a family history of
variants that cause disease) in genes individuals who had genetic testing done, the fact that these patients had history of breast or related cancers. cancer. Doing so can lead to hereditary
inherited from one’s parents. In other done through the hereditary breast hereditary breast cancer would not Of the 44 patients below the age of 45 breast cancer going undetected.
A new system for grading school- grade level, as well as for university 85 and above but below 90 receive an
leaving examinations developed by the admissions decisions. Approximately 4 A, 80 and above but below 85 receive
AKU Examination Board (AKU-EB) will million students take the tests annually. a B++ etc. – down to 70 percent. From
be used nationwide in Pakistan after 40 percent to 70 percent, the bands
the federal Inter Board Committee of The previous grading system had increase from 5 percentage points to
Chairmen (IBCC) voted to adopt it, seven levels (A-1, A, B, C, D, E and 10 percentage points. The minimum
starting in the 2023-2024 academic year. F). A score from 80-100 percent passing grade under the new system
received an A-1, while a score from is 40 percent, compared to 33 percent
Researchers at AKU-EB reviewed 70-80 percent received an A, a under the old system. Rather than
the grading systems of 30 countries score from 60-70 percent received an ‘F’ for ‘Fail’, the lowest grade is ‘U’
before developing the new system. Its a B, etc. A major problem with the for ‘Unsatisfactory’. Under the new
adoption reflects years of engagement system was the large band for an A-1, system, examination results will only
The system with the IBCC by AKU-EB and its CEO,
Dr Shehzad Jeeva, who has served
which failed to distinguish among
high performers. Narrower bands
show grades, not numerical scores.
Interviews also showed symptoms of post-traumatic masks, sanitizers and gowns, which
stress disorder. Resources necessary for providing were distributed to health care workers
indicate PTSD psychosocial support – such as space, who were having difficulty obtaining
The findings were based on phone trained staff and funding – were also such items. Approximately $7,000 worth
symptoms are interviews with nearly 4,000 individuals found to be limited or nonexistent. of such resources were distributed in
confident under
experienced in recent years and efforts fairly highly on several factors that
to shape their coverage by powerful Amid the pandemic, most media influence the quality of their journalism:
interests. Such are the findings of The outlets expected to survive: Four On a Likert scale of 1 to 5, with 1
pressure
State of Innovation and Media Viability out of five outlets put their likelihood representing the lowest score and 5
in East Africa, a 72-page report by of survival at 60 percent or higher, the highest, organizations rated their
AKU’s Graduate School of Media and despite the fact that the vast majority editorial practices a 4.23. They rated
Communications and DW Akademie. suffered financially in 2020. both their editorial independence
and their ability to provide regular
The report is based on an in-depth Journalists face intimidation and and attractive levels of pay a 3.64.
online survey of media managers pressure: Some 13 percent of media
and journalists from a total of 437 outlets in Tanzania, 35 percent in Kenya News organizations rate themselves
media outlets in Kenya, Uganda and and 58 percent in Uganda reported highly on the diversity of their staff
Tanzania from 2020 to 2021. More their journalists had been arrested despite the limited number of women in
than 800 journalists and nearly 275 or physically assaulted as a result of the media: Most organizations agreed
managers responded. The responses their work in 2019. Roughly a third of or strongly agreed that they have a
from within each organization were Kenyan outlets and half of Ugandan “diverse staff from different backgrounds
aggregated to produce a single score, outlets said they had spiked at least including women and marginalized
which the report then used for its one story due to political or business groups.” That is despite what the report’s
analyses. Some key findings follow. pressure in 2019. A third of Tanzanian authors call “well-documented gender
outlets said that in 2019 they had disparities in the newsroom.” One-
Media outlets tend to be young, spiked at least one story due to political quarter of the managers
independently owned and dependent pressure, and 15 percent said they had and one-third of the
on advertising for revenue: Although done so due to business pressure. journalists who
most print publications are older, about responded to the
60 percent of TV, radio, digital and Journalists may lack access to survey were
multimedia outlets are less than 10 years the equipment, technology and women.
old. About 60 percent of all outlets are training they need: Less than half
independently owned. Advertising is of organizations agreed or strongly
the top revenue source for all sectors agreed that their journalists have
of the media save print, for which access to needed equipment,
single-copy sales and paid downloads technology and training.
are the leading source of revenue.
Young media firms may be more likely Most news outlets believe they are
to fail, but may also be more likely to be innovative: More than 60 percent
innovative. The fact that most outlets of surveyed organizations
are independently owned may increase say they are innovative. The
the number of viewpoints to which figure is lowest among print-
In Pakistan, the fungus can cause severe and fatal infections. percent between 2006 and 2009 and “The reasons for increased drug fungal diagnostics in Pakistan,
Candida is becoming People with weakened immune 4.6 percent between 2010 and 2014. resistance are multifactorial, having previously benefitted from
increasingly resistant systems and those who have had In the United States, about 7 percent including limited capacity for fungal a capacity-building partnership
to antimicrobial drugs, certain types of hospital procedures of all Candida strains isolated from diagnosis, overuse of antifungals for with the CDC’s Myotic Diseases
according to an are most at risk of contracting blood samples tested by the Centers patient management and misuse Branch. The University is currently
AKU study. That is a invasive Candida infections. for Disease Control and Prevention of antifungals as disinfectants,” collaborating with Northwestern
worrisome finding given (CDC) are resistant to fluconazole. said Professor Kausar Jabeen, the University in the United States to
that Candida infections AKU researchers examined 2,200 study’s principal investigator. build its capacity in the genomic
can pose a serious Candida strains collected from 2015 For the first time in Pakistan, the surveillance of Candida species
threat to human health. to 2021 from hospitalized patients researchers found fluconazole The study’s results demonstrate the using whole genome sequencing.
in Pakistan. The average rate of resistance in Candida albicans, need for continuous surveillance of
Candida is a type of fungus resistance to fluconazole, a first-line Candida parapsilosis and Candida antifungal resistance in Pakistan.
that ordinarily lives on the skin treatment, was 8 percent in newborns, tropicalis. They also analyzed They may inform treatment
and in various areas within the 23 percent in children and 36 percent drug-resistant Candida strains to and prevention guidelines, as
body without causing harm. But in adults. That represents a sharp identify genetic mutations that well as policy development.
if it invades the blood or organs, it increase from resistance rates of 2.1 may contribute to resistance. AKU is a leader in the field of
The health of children in some of Population and Housing Census and supplements. Doing so yielded an
Kenya’s poorest counties could be Demographic and Health Survey. estimated reduction in the prevalence of
improved without increasing spending stunting from 40 percent to 33 percent
by directing funding to more cost- The Optima model includes over the 10-year modelling period.
effective nutrition interventions, interventions proven either to directly
according to a study by researchers reduce stunting, wasting, anaemia The study team has begun engaging
at AKU and other institutions. and mortality, or to reduce their with policymakers and nutrition
risk factors, such as preterm birth, programme planners at the national
Developed for the World Bank by failure to breastfeed and diarrhoea. and county levels to consider how
researchers in Australia, Optima The effect of optimizing budgets was incremental progress toward the
Nutrition is a modeling tool that makes projected for a 10-year period and optimal budget allocations generated
it possible to optimize spending across compared to a baseline scenario in using the Optima model can be
a range of nutrition interventions which 2019 spending was continued. achieved. Additionally, they hope to
to minimize stunting and wasting test the impact of implementing the
in children, as well as anaemia in In most counties, to lower the number model’s recommendations. Ogero and
children and pregnant women. of stunted children, the model Ngugi worked with researchers from
working with Ogero and Associate Professor Anthony nutrition supplementation and Vitamin
Ngugi used the tool to estimate the A supplementation. For example, in
limited budgets impact of optimizing nutrition budgets Baringo county, the model shifted
in the 24 counties with the poorest resources from zinc tablets and
nutrition outcomes in Kenya. Data came oral rehydration salts (used to treat
from seven sources, including Kenya’s diarrhoea) to lipid-based nutrition
women during visits to their homes. The project was carried out in close
collaboration with Kilifi County
A project to provide ultrasound scans More than 3,000 women were invited to Government, sub-county government
to pregnant women in rural Kenya the study and received an ultrasound and the Philips Foundation. AKU
increased the number of women seeking scan, most of them before 24 weeks. researchers have partnered with
antenatal care and demonstrated the Gestational age was determined and government officials in the area on
feasibility of providing ultrasounds in multiple pregnancies were detected, numerous projects in recent years. For
community health facilities in resource- leading to referrals to higher-level health example, they have been collecting
poor settings. facilities. and analyzing health and demographic
information on more than 75,000 people
The World Health Organization Overall, the project generated positive in Kilifi County since 2017, in partnership
recommends pregnant women receive outcomes and was appreciated by with sub-county health officials.
an ultrasound within 24 weeks of stakeholders, according to researchers.
gestation as part of routine antenatal Patients as well as health care providers Professor Marleen Temmerman was
care to allow accurate determination and managers felt that the provision the project’s principal investigator. Co-
of gestational age and detect multiple of ultrasounds and mobile technology investigators included Nidhi Leekha,
pregnancies and fetal anomalies. was relevant, feasible and effective; Lucy Nyaga, Michaela Mantel, Sikolia
benefitted the target population; and Wanyonyi, Rachel Odhiambo and Sarah
Known as Mimba Yangu (or My improved the utilization and quality of Kedenge.
Pregnancy), the project was funded by antenatal care services. Data showed
the Philips Foundation and conducted an increase in the number of women
by the AKU Centre of Excellence in visiting facilities for antenatal care four
Women and Child Health in three rural or more times, likely due to their first
communities of Kilifi County where AKU visit coming earlier in their pregnancy.
has been working for years: Kaloleni, The project also demonstrated that the
Ganze and Rabai. Fourteen government WHO’s recommendation that women
Researchers at AKU are utilizing gut microbiota are shaped by a variety of children living in low-income, peri-urban
genetic sequencing to understand the factors, with one likely factor being the communities of Karachi.
gut microbiome and its influence on maternal microbial reservoir. Yet little is
maternal and child health. known about how transmission occurs The study is part of a larger effort by AKU
from mother to child. to become a leader in gut microbiome
Characterization of the human research in Pakistan and to undertake
microbiome can provide valuable Whole genome shotgun metagenomics clinical studies of interventions that
insights into the status of human health sequencing technology offers a can improve maternal, foetal and infant
and disposition to disease. The gut robust way to study the effect of the health. It is being funded by the Bill &
microbiome changes during pregnancy gut microbiome on human health. Melinda Gates Foundation as part of
and appears to differ in women Shotgun metagenomics is the the development of a multi-country
with certain pregnancy-associated untargeted (“shotgun”) sequencing platform that will enable clinical
complications. An infant’s microbiome of all microbial genomes present in a trials of interventions for improving
may have long-term implications for its sample. To understand the transmission maternal nutritional status and foetal
physical growth, nutritional status and and adaptation of the maternal and growth. Other study sites are located
cognitive development. infant gut microbiomes and how they in Bangladesh, Senegal and Zambia.
could be modulated to manage risk Associate Professor Fyezah Jehan is the
Gut microbiota composition and factors in pregnancy, AKU researchers study’s principal investigator.
The influence of the function develop throughout the first are performing such sequencing on
A research asset unlike any other in and other activities for local residents. many organizations will be interested
AKU’s portfolio is rapidly taking shape The second site, known as Two Rivers, in pursuing research at the station.
in Tanzania. Featuring 3,700 acres consists of 500 acres located between
of undeveloped land, the Arusha the Malala and Tengeru rivers, and Several research projects are already
Climate and Environmental Research is currently used for horticultural underway and more than a dozen others
Station will be a living laboratory for crops. Current activities at the sites are in various stages of development.
studies related to climate change will largely continue as the University A community needs assessment was
and environmental sustainability. adds laboratory facilities and housing undertaken as a first step toward
for researchers and students. identifying local challenges that
The station consists of two sites. The researchers could address. A study
Manyara site consists of 3,200 acres of Efforts to take full advantage of the sites’ of pollinators will help to address the
historically degraded and deforested research potential are well underway. lack of data on pollinator populations
land, dotted with seven hills and An advisory committee has been in Tanzania. Pollination by bees,
featuring views of 4,500-metre-tall established that includes experts from butterflies and other creatures increases
Mount Meru, which sits at the centre of the University of Alberta and Simon production of most agricultural crops,
Arusha National Park. Portions of the Fraser University. Insights into field- but pollinator populations are shrinking
site are used by contract farmers for the station operations have been garnered around the world. One recent study
production of flower seeds, coffee, fruit via visits to the Mpala Research Centre, by Harvard University estimates that
and vegetables, and its grasses are used operated by Princeton University and insufficient pollination could reduce
by area residents as fodder for livestock. others, and the International Livestock agricultural income in some lower-
The University has planted more than Research Institute’s Kapiti Research income countries by 10-30 percent.
200,000 trees on the property and Station. Partnership agreements are
operates an agricultural demonstration in place with a dozen universities
site that displays climate-resilient and research institutions in Tanzania,
approaches to small-scale farming. Canada and the United States,
Manyara is also home to an AKU-run including the Tanzania Wildlife Research
Community Outreach Centre, which Institute and Simon Fraser University.
offers educational opportunities, sports Discussions indicate scientists from
Hepatitis D, or delta hepatitis, is The CARES trial is a phase III, four- The LIDERA trial is a phase III study of The ASTEFANIA trial is a phase III The CHIMES trial is a three-country, to treat COVID-19 is complete. It
a liver infection that can lead to country trial evaluating the use of Giredestrant to treat estrogen-receptor double-blind, placebo-controlled study phase IV trial of ocrelizumab to treat discontinued evaluation of lopinavir,
cirrhosis, cancer and early mortality. ibrexafungerp to treat patients with positive, HER2-negative early breast assessing the use of atezolizumab relapsing multiple sclerosis in black and hydroxychloroquine and interferon
The D-LIVR trial is a phase III study candidiasis caused by Candida auris, cancer. Tamoxifen and aromatase and trastuzumab emtansine to treat Hispanic patients. Black and Hispanic (IFN)-β1a for futility and found that
examining the use of lonafarnib to a yeast. Candida auris is often drug- inhibitors are the main therapies patients with HER2-positive primary patients are underrepresented in clinical remdesivir had no significant effect
treat hepatitis D, either in combination resistant and more than one-third of currently used to treat such cancer, breast cancer who have received trials of multiple sclerosis treatments, on ventilated COVID-19 patients and a
with ritonavir, which is used to treat patients with an invasive Candida but many patients relapse and the side preoperative chemotherapy and HER2- yet they may suffer worse outcomes small effect against death or progression
HIV, or in combination with ritonavir auris infection die. The trial’s sponsor effects of the drugs can lead patients directed therapy and have residual from the disease. A total of 179 patients to ventilation among other hospitalized
and peginterferon alfa, which is used is U.S.-based Scynexis Inc. Scynexis to discontinue treatment. Giredestrant invasive disease. An estimated 1,700 are enrolled in the study, which is patients. The ACT trial, sponsored by
to treat hepatitis B and C. Of the 400 is also sponsoring the FURI trial, a is a novel endocrine therapy that could patients in more than 30 countries sponsored by U.S.-based Genentech. Canada’s Population Health Research
patients enrolled in the study by more phase III trial that is evaluating the decrease relapse and recurrence while will be enrolled in the study. The Institute, is complete and found no
than 100 sites in 22 countries, 53 use of ibrexafungerp in patients with a causing fewer side effects. An estimated sponsor is Switzerland-based Roche. COVID-19 TRIALS support for the use of colchicine or
come from AKU, more than from any fungal disease that has been intolerant 4,100 patients from more than 50 aspirin to prevent disease progression
other site. The trial’s sponsor is U.S.- or refractory to standard antifungal countries will be enrolled in the trial. The TALIOS A number of trials of COVID-19 or death in outpatients with COVID-19.
based Eiger BioPharmaceuticals. treatment. An estimated 30 patients sponsor is Switzerland-based Roche. vaccines and therapeutics to which Sponsored by China’s Pacific Meinuoke,
in four countries will be enrolled in The TALIOS trial is a phase II study of AKU contributed have been completed the DEFLECT study of meplazumab to
the CARES trial and an estimated two drugs, both bispecific antibodies, to and several are underway or about to treat patients with severe COVID-19
200 patients in eight countries will treat advanced or metastatic squamous begin. The COPCOV trial sponsored by reported that the drug “promoted
be enrolled in the FURI trial. cell carcinoma of the oesophagus, Oxford University evaluating the use COVID-19 convalescence and reduced
compared with nivolumab. An estimated of chloroquine or hydroxychloroquine mortality, viral load and cytokine levels.”
210 participants from more than 20 to prevent COVID-19 is complete, A trial of two Sanofi vaccines is ongoing.
countries will be enrolled in the trial. The with results yet to be published. The A vaccine produced by China-based
sponsor is Switzerland-based Roche. World Health Organization’s Solidarity Livzon Pharmaceutical has reportedly
trial of repurposed antiviral drugs been approved for use as a booster.
The Glove is a three-in-one wearable – and easy to use. It has received a US Roughly the size of a thumb drive, the used with either dry or gel electrodes. Cardiac surgery trainees can benefit
device that can be used to measure patent and researchers are working to ECG On-the-Go can be used at home by Researchers are working to engage from practicing procedures on heart
oxygen saturation via an infrared engage a company to build prototypes patients to record an electrocardiogram a company to build prototypes that simulators, yet most such simulators
sensor and blood pressure via an that can be used in a clinical trial. The and send it via a mobile app to their can be used in a clinical trial. The ECG are unable to mimic blood flow and are
inflatable cuff, while also recording Glove was funded by Grand Challenges physician, enabling the detection of a On-the-Go was developed by Saleem therefore insufficiently lifelike. An AKU
an electrocardiogram via electrodes. Canada and developed by Professor variety of heart problems. As patients Sayani, Muhammad Abdul Muqeet, team was able to create a higher-fidelity
It can therefore take the place of a Ayeesha Kamran Kamal, Senior do not always exhibit symptoms when Hafiz Imtiaz Ahmed, Hafsa Talat, simulator that pumps a blood-like fluid
pulse oximeter, a sphygmomanometer Instructor Ambreen Gowan and a team a scheduled electrocardiogram is Professor Ayeesha Kamran Kamal, through a cow’s heart. The device was
and an electrocardiogram machine. of researchers at the Digital Health performed, the flexibility the device Ambreen Amir Ali and Naeem Sheikh. created by Professor Saulat Fatimi,
Readings are sent wirelessly to a Resource Centre that included Saleem permits can enable the detection Head of Cardiothoracic Surgery; the late
smartphone application and an Sayani, Hafiz Imtiaz Ahmed, Hafsa of issues that might otherwise be Professor Charles Docherty, who prior
algorithm generates a diagnosis. The Talat and Muhammad Abdul Muqeet. overlooked. The US-patented device to his untimely passing in early 2023 was
Glove is comfortable, washable – its features a rechargeable battery and Director of the Centre for Innovation in
electronic components are waterproof retractable electrodes and can be Medical Education; and Dr Mohammad
Bin Pervez, a graduate of the MBBS The Hayat mobile application is used LHWs can use to instantly pull up their
programme and a former chief resident by 1,850 Lady Health Workers in rural patient records. Hayat won the top
in cardiothoracic surgery. The simulator Gilgit-Baltistan and Chitral. Lady Health prize in the maternal and neonatal
is housed within the Anatomy and Workers are government-employed health category at the fifth annual
Surgery Learning Studio and is being community health workers who provide Commonwealth Digital Health Awards.
used by cardiac surgery residents. “The basic health services to women, children
pumping heart simulator represents and families during home visits. As Support for the development of the
a significant breakthrough in cardiac they visit households, workers use devices was provided by the University’s
surgery training,” said Dr Fatimi, who the Hayat app to record details of the Technology Innovation Support Centre
hopes to eventually market the device services they deliver, while a geo- and Digital Health Resource Centre.
to other institutions. “While earlier mapping feature tracks their location.
simulators were limited to training The data can be analyzed and used for
procedures designed for the surface of decision-making by supervisors and
the heart, our simulator allows trainees policymakers. In addition, individuals
to practice procedures inside the heart.” receive a card with a QR code that
A US patent has been applied for.
The University Research Council (URC) The Institutional Biosafety Committee Since the launch of AKU’s first graduate The Ethics Review Board reports to The Animal Research Facility on the Located on the Stadium Road campus
was appointed in 1999 by the AKU (IBC) ensures that all research activities, programme in 1993, more than 2,800 the University Research Council and Stadium Road campus in Karachi in Karachi, Juma Research Laboratory
Board of Trustees. It is the University’s including intramural and extramural students have earned degrees from is tasked with monitoring ethical caters to the needs of researchers has Biosafety Level 2 and 3 facilities
apex body for research governance. The grant applications, are reviewed in light 18 graduate programmes, ranging compliance in research, standardizing and educators in two purpose-built and supports basic science research,
Council consists of senior management of national and international standards from the Master of Education to the review processes across eight Ethics buildings. The facility is managed by including research related to cancer
together with representatives of various before activity is initiated. Additionally, Master of Science in Epidemiology Review Committees on three continents the Animal Facility Committee and stem cells, antimicrobial resistance,
research constituencies within the the Committee provides oversight and Biostatistics. More than half of and addressing appeals. The Board overseen by the Ethics Committee for vaccines, drugs and maternal and child
University. It has put in place a multi- to all material transfer agreements graduates are women. The number of monitored 52 research studies for the Animal Care and Use (ECACU). The health. Of the 32 research projects
country system for ethical review of all (MTAs), ensuring compliance with PhD students at AKU has been steadily Faculty of Health Sciences in Pakistan latter reviews and approves proposals currently ongoing at the laboratory,
research involving human and animal international shipping regulations. In increasing, with 47 PhD graduates in 2022, amounting to 20 percent of for work with research animals, and two-thirds are externally funded.
subjects and an institutional bio-ethics 2022, the IBC’s grant review process was thus far and an additional 48 students all projects. During 2022, it began ensures ethical compliance, animal The laboratory includes a genomics
safety committee to vet proposals upgraded to PeopleSoft, a software- enrolled in doctoral programmes in monitoring studies in Kenya, where 24 well-being and biosafety for researchers facility that features state-of-the-art
where required. The URC is supported based system, where all extramural 2022. The Office of Graduate Studies studies, representing 20 percent of all and facility staff. The ECACU conducts technologies such as an Illumina MiSeq
by a Grants Review Committee, which grant proposals and MTAs are now ensures compliance with regulations projects, were randomly selected and an annual workshop “Principles of machine and a Nanopore sequencer. The
evaluates proposals for funding from uploaded and approved. The IBC also and policies governing the PhD monitored for ethical compliance. Laboratory Animal Science”, which is laboratory is poised to undergo a major
AKU resources. Over the past decade, introduced and implemented an online programmes and scrutinizes over 200 attended by local and international renovation over the next few years.
the URC has awarded 174 intramural training programme for all research theses and dissertations each year. SHARED RESEARCH SERVICES attendees. The workshop is unique
research grants totaling more than $2.5 staff at Juma Research Laboratory. A in Pakistan, and contributes to
million. In 2022, 25 intramural grants total of 81 grant proposals and 38 MTAs In October 2022, the Faculty of Health national capacity development.
totaling $320,000 were awarded. Sixty were reviewed in 2022. The Committee Sciences in Pakistan established AKU is pursuing international
percent of awardees were women. strives to maintain an average the Office of Shared Research accreditation for the facility to
turnaround time from project receipt Services. It facilitates all financial ensure compliance with the highest
to final decision of 10 working days. and administrative aspects of grant standards in care and use of animals.
management, including pre-award,
post-award and close-out activities.
The SRS works in collaboration with
the Office of Research and Graduate
Studies, which is AKU’s global office for
research and grant administration.
In this genomic epidemiology study, analysis revealed a declining trend of This study assessed the effect of the were not significantly affected. Although The phase I/II FIGHT-101 study tumors and driven by FGFR fusions/
we sequenced the genomes of 3489 S multidrug resistant typhoid in south COVID-19 pandemic on essential most of the health indicators began to (NCT02393248) evaluated safety, rearrangements and mutations. These
Typhi strains isolated from prospective Asia, except for Pakistan, where XDR health-care services in Kenya. Using recover during the pandemic, the health- pharmacokinetics, pharmacodynamics, results prompted a registrational study
enteric fever surveillance studies S Typhi emerged in 2016 and rapidly county-level data from health facilities, care workers’ strike resulted in nearly and preliminary efficacy of pemigatinib, in cholangiocarcinoma and phase
in Nepal, Bangladesh, Pakistan, replaced less-resistant strains. we examined changes in 17 indicators. all indicators falling to numbers lower a potent and selective fibroblast growth II/III trials in multiple tumor types
and India (between 2014 and 2019), In the pre-pandemic period, we than those observed at the onset or factor receptor (FGFR) 1-3 inhibitor, as demonstrating the benefit of precision
and combined these with a global da Silva KE, Tanmoy AM, Pragasam observed a positive trend for multiple during the pre-strike pandemic period. monotherapy or in combination therapy, therapy, even in early phase trials.
collection of 4169 S Typhi genome AK, Iqbal J, Sajib MSI, Mutreja A, indicators. The onset of the pandemic for refractory advanced malignancies,
sequences isolated between 1905 and Veeraraghavan B, Tamrakar D, Qamar was associated with statistically Kiarie H, Temmerman M, Nyamai M, Liku with and without fibroblast growth Subbiah V, Iannotti NO, Gutierrez M,
2018 to investigate the temporal and FN, Dougan G, Bogoch I, Seidman significant decreases in outpatient N, Thuo W, Oramisi V, Nyaga L, Karimi factor (FGF) and receptor (FGFR) Smith DC, Féliz L, Lihou CF, Tian C,
geographical patterns of emergence JC, Shakya J, Vaidya K, Carey ME, visits, cervical cancer screenings, HIV J, Wamalwa P, Gatheca G, Mwenda gene alterations. Eligible, molecularly Silverman IM, Ji T, Saleh M. FIGHT-101,
and spread of antimicrobial-resistant Shrestha R, Irfan S, Baker S, Luby SP, tests, malaria testing, tuberculosis V, Ombajo LA, Thumbi SM; Essential unselected patients with advanced a first-in-human study of potent and
S Typhi. We performed non-parametric Cao Y, Dyson ZA, Garrett DO, John cases, hypertension cases, vitamin A Health Services Data Monitoring and malignancies were included in part selective FGFR 1-3 inhibitor pemigatinib
phylodynamic analyses to characterise J, Kang G, Hooda Y, Saha SK, Saha S, supplements, and diphtheria, tetanus Evaluation sub-working group. The 1 (dose escalation; 3 + 3 design) to in pan-cancer patients with FGF/FGFR
changes in the effective population size Andrews JR. The international and toxoid, and pertussis vaccinations. COVID-19 pandemic and disruptions determine the maximum tolerated dose. alterations and advanced malignancies.
of fluoroquinolone-resistant, extensively intercontinental spread and expansion Pneumonia cases, diarrhea, and children to essential health services in Kenya: Part 2 (dose expansion) evaluated the Ann Oncol. 2022 May;33(5)
drug-resistant (XDR), and azithromycin- of antimicrobial-resistant Salmonella attending welfare clinics decreased a retrospective time-series analysis. recommended phase II dose in tumors
resistant S Typhi over time. We inferred Typhi: a genomic epidemiology study. significantly, while cases of sexual Lancet Glob Health. 2022 Sep;10(9) with or where FGF/FGFR activity is
timed phylogenies for the major S Typhi Lancet Microbe. 2022 Aug;3(8) violence increased. Skilled deliveries, relevant. Pemigatinib was associated
sublineages and used ancestral state antenatal care, people with HIV infection with a manageable safety profile
reconstruction methods to estimate the starting antiretroviral therapy, confirmed and pharmacodynamic and clinical
frequency and timing of international cases of malaria, and diabetes cases activity, with responses seen across
and intercontinental transfers. Our
A prospective, observational study B streptococcus was rarely found. A systematic scoping review was epidemic were associated with adverse A multicountry, matched cohort iGBS survivors need long-term follow-up
was conducted in delivery units A. baumannii was rarely found in the conducted to identify the existing mental health among adolescents study was carried out to assess with integrated emotional-behavioral
and neonatal intensive care units to placentas of these deceased neonates. evidence regarding the association of and youth from LMICs. Geographically the emotional-behavioral problems assessments and appropriate care.
identify pathogens found in internal Findings from this study can help better mental health with outbreaks of the localized disease outbreaks such and psychopathological conditions
organs and placentas of deceased understand and address the factors influenza A (H1N1), Zika, Ebola, and as Ebola, Zika, and H1N1 influenza in survivors of invasive group B Chandna J, Liu WH, Dangor Z, Leahy S,
preterm infants cared for in hospitals contributing to neonatal mortality. SARS-CoV-2 virus in exposed youth were deemed highly understudied Streptococcus (iGBS) disease, Sridhar S, John HB, Mucasse H, Bassat
in India and Pakistan. Tissue samples and adolescents in LMICs. Across 6 and warrant future investigation. specifically infant iGBS sepsis and Q, Bardaji A, Abubakar A, Nasambu C,
from deceased neonates obtained by Ghanchi NK, Ahmed I, Kim J, Harakuni databases, the mental health outcomes meningitis, including children aged 18 Newton CR, Sánchez Yanotti C, Libster
minimally invasive tissue sampling S, Somannavar MS, Zafar A, Tikmani of adolescents and youth associated Kumar M, Akbarialiabad H, Kouhanjani months to 17 years. Data was sourced R, Milner K, Paul P, Lawn JE; GBS Low
and placentas were examined for 73 SS, Saleem S, Goudar SS, Dhaded SM, with 4 major pandemic outbreaks in MF, Kiburi S, Shidhaye P, Taghrir MH, from health demographic surveillance and Middle income Collaborative
different pathogens using multiplex Guruprasad G, Yogeshkumar S, Hwang LMICs were reviewed. A total of 57 Shidhaye R. Association of Major systems or hospital records in Argentina, Group for Long-term Outcomes
polymerase chain reaction (PCR). Tissue K, Aceituno A, Silver RM, McClure EM, studies fulfilled the search criteria, 55 Disease Outbreaks With Adolescent India, Kenya, Mozambique, and South group. Emotional and Behavioral
for pathogen PCR was obtained from Goldenberg RL. Pathogens Identified related to the SARS-CoV-2 pandemic and and Youth Mental Health in Low- and Africa. Children without an iGBS history Outcomes in Childhood for Survivors
liver, lung, brain, blood, cerebrospinal by Minimally Invasive Tissue Sampling 2 to the H1N1 influenza epidemics. The Middle-Income Countries: A Systematic were matched to iGBS survivors for sex of Invasive Group B Streptococcus
fluid, and placentas from 377 deceased in India and Pakistan From Preterm studies reported high rates of anxiety Scoping Review. JAMA Psychiatry. and age. Our findings suggested that Disease in Infancy: Findings From 5
preterm infants. In organ samples from Neonatal Deaths: The PURPOSE Study. and depressive symptoms among 2022 Dec 1;79(12):1232-1240. doi: school-aged iGBS survivors experienced Low- and Middle-Income Countries.
deceased infants in India and Pakistan, Clin Infect Dis. 2023 Feb 8;76(3) adolescents, including posttraumatic 10.1001/jamapsychiatry.2022.3109. increased mild emotional behavioral Clin Infect Dis. 2022 Jan 20;74
evaluated with multiplex pathogen PCR, stress disorder, general stress, and PMID: 36223094. problems that may affect children and
A. baumannii was the most commonly health-related anxiety, suggesting that families. At-risk neonates including
identified organism, whereas Group the COVID-19 pandemic and H1N1
Venous thromboembolism (VTE) is a Quality improvement efforts to decrease Many investigators have attempted to contentious. We provide an up-to-date In Pakistan, the prevalence of stunting among children aged 6–23 months
major cause of preventable morbidity the burden of VTE in postoperative elucidate the precise pathophysiological review on the immune dysregulation among children younger than 5 has in marginalized populations. UCT +
and mortality after cancer surgery. patients should measure and account mechanisms causing COVID-19 caused by COVID-19 and highlight remained above WHO critical thresholds SBCC was not effective in reducing
Venous thromboembolism events for these late VTE-related readmissions. respiratory and systemic disease. pertinent discussions in the scientific (≥30%) over the past 2 decades. We the child stunting prevalence.
that are significant enough to require Spillover of lung-derived cytokines community. We hope that this review hypothesized that an unconditional
hospital readmission are potentially Mallick S, Aiken T, Varley P, Abbott causing a cytokine storm is considered informs the aims of future research. cash transfer (UCT) combined with Soofi SB, Ariff S, Khan GN, Habib A,
life threatening, yet data regarding the D, Tzeng CW, Weber S, Wasif N, the cause of systemic disease. lipid-based nutrient supplement (LNS) Kureishy S, Ihtesham Y, Hussain M,
frequency of these events beyond the Zafar SN. Readmissions From However, recent studies have provided Shafqat A, Shafqat S, Salameh SA, and/or social and behavior change Rizvi A, Sajid M, Akbar N, Garzon C,
30-day postoperative period remain Venous Thromboembolism After contradictory evidence, whereby the Kashir J, Alkattan K, Yaqinuddin communication (SBCC) will prevent de Pee S, Bhutta ZA. Effectiveness
limited. A retrospective cohort study Complex Cancer Surgery. JAMA extent of cytokine storm is insufficient A. Mechanistic Insights Into stunting among children 6–23 mo of of unconditional cash transfers
of the 2016 Nationwide Readmissions Surg. 2022 Apr 1;157(4):312-320. doi: to cause severe illness. These issues the Immune Pathophysiology of age. This was a 4-arm, community- combined with lipid-based nutrient
Database was performed to study adult 10.1001/jamasurg.2021.7126. PMID: are highly relevant, as management COVID-19; An In-Depth Review. Front based cluster randomized controlled supplement and/or behavior change
patients readmitted with a primary VTE 35080619; PMCID: PMC8792793. approaches considering COVID-19 Immunol. 2022 Mar 24;13:835104. doi: trial conducted in the district of Rahim communication to prevent stunting
diagnosis. Data obtained from 197 510 a classic form of acute respiratory 10.3389/fimmu.2022.835104. PMID: Yar Khan, Pakistan. A total of 1729 among children in Pakistan: a cluster
visits for 126 104 patients were analyzed. distress syndrome with a cytokine 35401519; PMCID: PMC8989408. children (UCT, n = 434; UCT + SBCC, randomized controlled trial. Am J
VTE-related readmissions after complex storm could translate to unfounded n = 433; UCT + LNS, n = 430; and UCT Clin Nutr. 2022 Feb 9;115(2):492-502.
cancer surgery continued to increase clinical decisions, detrimental to patient + LNS + SBCC, n = 432) were enrolled doi: 10.1093/ajcn/nqab341. PMID:
well beyond 30 days after surgery. trajectory. Additionally, the precise at 6 months of age and measured 34612491; PMCID: PMC8827069.
immune cell signatures that characterize monthly for 18 months until the age of
disease of varying severity remain 24 months. UCT combined with LNS
and UCT + LNS + SBCC were effective
in reducing the prevalence of stunting
Use of pesticides is implicated in There is a need for reliable monitoring To assess the baseline critical care setting (56.6%). Almost all ranks showed The purpose of this research was contexts as all institutions and their
decrement in lung function, manifested and reporting procedures along with capacity of Pakistan, we conducted significant disparity between public- to focus on work-based problems students enter the new normal.
as restrictive or obstructive dysfunction appropriate environmental policies and a series of cross-sectional surveys private and metropolitan-rural settings, catalysed by the COVID-19 global
or both. Using comparative cross- regulations for handling of pesticides. of hospitals providing COVID-19 care with private and metropolitan hospitals pandemic, based on a case study Khamis, Tashmin & Naseem, Azra &
sectional study design, the authors Interventional studies are needed where across the country. These hospitals having a greater proportion in the 1st of the Aga Khan University, a multi- Khamis, Anil & Petrucka, Pammla. (2021).
conducted the study to determine farmers could be trained on the proper were pre-identified by the Health rank, while public and rural hospitals had continental, multi-campus university. The COVID-19 pandemic: a catalyst
an association of pesticide use with use of personal protective equipment Services Academy, Pakistan. Surveys a greater proportion in the lower ranks. Higher education institutions (HEIs) for creativity and collaboration for
impairment in lung function among (PPE) to limit exposure to pesticides. were administered via telephonic and in developing countries lacked pre- online learning and work-based higher
agricultural farmers. The data were on-site interviews and based on a Khan MA, Shahbaz H, Noorali AA, existing infrastructure to support online education systems and processes.
collected using modified American Wadani ZH, Azam I, Irfan M, Fatmi unique checklist for assessing critical Ehsan AN, Zaki M, Asghar F, Hassan education and/or policy and regulatory Journal of Work-Applied Management.
Thoracic Society Division of Lung Z. Pesticides Use and Impaired care units, which was created from the MM, Arshad HM, Sohaib M, Asghar MA, frameworks during the pandemic. The 10.1108/JWAM-01-2021-0010.
Disease questionnaire and spirometer Lung Function Among Male Partners in Health 4S Framework, which Khan MF, Sabeen A, Aqeel M, Khan MH, University’s programmes in Pakistan
measurements. Using multinomial Agricultural Farmers in Rural Sindh, is: Space, Staff, Stuff, and Systems. These Munir T, Amin SK, Atiq H, Haider AH, and East Africa provide lessons to
logistic regression, the risk of both Pakistan. Asia Pac J Public Health. components were scored, weighted Samad Z, Latif A. Disparities in adult other developing countries’ HEIs. The
restrictive and obstructive lung 2022 Mar;34(2-3):230-235. doi: equally, and then ranked into quartiles. critical care resources across Pakistan: University’s focus on teaching and
dysfunction was found to be almost 10.1177/10105395211065647. Epub A total of 106 hospitals were surveyed, findings from a national survey and learning and staff development has had
twice among pesticides users with 2021 Dec 15. PMID: 34911377. with the majority being in the public assessment using a novel scoring a transformational organisational effect.
each increasing year of exposure to sector (71.7%) and in the metropolitan system. Crit Care. 2022 Jul 11;26(1):209. The paper provides important and
pesticides (1.92 and 1.95, respectively) critical lessons and recommendations
after adjusting for other covariates. to other institutions in similar
350 318
293
300
263
250
203
182 191
200
157 148
135 145
150 119
102 102 109
88 93 84 94 92
100 69
50
0
2013 2014 2015 2016 2017 2018 2019 2020 2021 2022
Over the past decade, AKU received funding for 1,134 extramural grants.
GRANTS RECEIVED
(US$ IN MILLIONS)
100
89.9
90
80
70
60 53.45 3,500+ 1,000-3,500 250-1,000 1-250 No data available
50
38.3
40 30.64 32.3
30 24.06 23.12 This map shows the number of joint publications by faculty members from AKU and other
22.2 19.8
20 institutions by country, from 1983 to 2023. It shows how many peer-reviewed articles co-authored
11.99
by AKU researchers and researchers from a given country have appeared in scholarly journals.
10
0
2013 2014 2015 2016 2017 2018 2019 2020 2021 2022
The number of publications for Pakistan is 13,571
AKU received extramural grants worth $345.8 million over the past decade.
61 34
236 163
2,737 75
148 21
235 16
54 4
15 6
81 178
During the period 2017 to 2022, more than 77% of publications authored or co-authored by AKU
researchers aligned with the UN Sustainable Developmental Goals (SDGs). These 4,064 publications
have garnered a total of 227,214 views and have been cited by 128,809 peer-reviewed articles.
AKU Research 54
Office of Research & Graduate Studies
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