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Insignis Micro Gram (+) Rods
Insignis Micro Gram (+) Rods
Dr. Fe Cabugao
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Biochemical Characteristics Ferments a variety of carbohydrates
Gelatin is liquefied inverted pine tree growth (+) motility, only seen in some
strains
Hydrolyze starch
Vogues-Proskauer test (+)
Pathogenesis:
o Spores in the environment may be traumatically implanted, inhaled, or ingested
germinate produce anthrax toxin
Laboratory Diagnosis Bacteriological test – presumptive; smears from exudates, pus, sputum, or blood
Culture
Serologic
o ELISA
o Microhemagglutination
Treatment Penicillin (drug of choice)
Prevention Vaccination
o Animals living spore vaccine
o Humans protective antigen vaccine (high risk)
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Bacillus subtilis Bacillus cereus
General Hay bacillus Same morphology as B. anthracis, except motile
Ubiquitous organism (air, dust, brackish water) Found naturally in rice and vegetables
Common laboratory contaminant Spores not killed by boiling
Medical importance antibiotic producer
Clinical Infections Bacteremia fatal Foodborne gastroenteritis/Food poisoning –
Infection among ICP resulting from ingestion of enterotoxin secreted by
Eye infection the organism
Common source fried rice
Frequently mistaken for Staphylococcal food
poisoning
Two forms:
Emetic form – food poisoning with short
incubation period 4 hours after ingestion
severe nausea and vomiting, lasts 8-10
hours
Diarrheal form – food poisoning with long
incubation period 17 hours after ingestion
abdominal cramps and diarrhea, lasts
20-36 hours
Treatment B-lactam antibiotics Aminoglycosides (Clindamycin/Vancomycin)
LABORATORY IDENTIFICATION
Characteristics Bacillus anthracis Bacillus cereus
Hemolysis on BA - +
Motility - +
String of pearls appearance + -
Growth on PEA - +
Gelatin Hydrolysis - +
Susceptibility to Penicillin (10 U/mL) Susceptible (S) Resistant (R)
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Clostridium perfringens (also, Clostridium welchii)
General One of the most important species
25 – 35% of healthy individuals harbor the organism in the colon
Found abundantly in soil, water, dust
Invasive infection
Cause myonecrosis
Gas gangrene
Morphology Short plump Gram (+) rod with blunt/square ends
Size: 2-4 um length, 1-1.5 um width
Sporeformer → large, ovoid, centrally located not swollen
Capsulated
Nonmotile
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toxin attack healthy muscle & surrounding tissues
Food poisoning
o Due to enterotoxin secreted by organism in GIT germinate 8-24 hours after,
development of signs and symptoms
o Characterized by diarrhea, abdominal pain, vomiting
o Self-limiting and resolve 24 hours
Used as microbial indicator for fecal contamination of water
Clinical Manifestations Convulsion – due to contraction of voluntary muscles when toxin the spreads
hematogenously, resulting in spasms
Spastic paralysis – beginning in the jaw area (trismus/lockjaw, risus sardonicus/sardonic
smile)
If left untreated, descends downward, causing paralysis of large muscles &
opisthotonus (rigid back spasm)
May lead to death from paralysis of throat & respiratory muscles
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Laboratory Diagnosis No microbiological or serological diagnosis
Organism is rarely isolated from the wound site. So diagnosis is based on:
o Clinical appearance of patient – signs and symptoms of disease
o Anaerobic culture of contaminated tissue from infected wounds
o Biochemical test – confirmatory
Clostridium botulinum
Morphology Gram (+), large, straight or slightly curved rod with rounded ends
Motile peritrichous flagella
Sporeformer oval, subterminal, swollen, racket-shaped appearance
Disease Botulism / Fatal Food poisoning – due to ingestion of food containing preformed
botulinum toxin (neurotoxin)
Absorbed in GIT mucosa bloodstream → acts on myoneural junction → blocking
GOOD TO KNOW: the release of acetylcholine
Botox – Type A botulinum toxin Incubation period of 12-36 hours
Blocks the release of Acetylcholine in the NMJ, Spores abundantly found in soil contaminate vegetables and meat
which is for muscle contraction. When canned or vacuum-packed without adequate sterilization, spores survive
No muscle contraction occurs leading to Flaccid germinate produce toxin
paralysis wrinkle-free skin
Types of botulism:
o Foodborne (Toxicosis) – most common & most severe
results from ingestion of contaminated food containing neurotoxin
0
inactivated by heating @ 60 C
o Infant botulism – seen infants resulting from ingestion of spores found in dust
GIT germinate toxin production
o Wound botulism – spores from the environment enters the tissue
germinate production of toxin absorbed
Clinical Manifestations Symmetrical descending weakness & paralysis
Diplopia, dysphagia pharyngeal paralysis respiratory failure
Organism produces the most potent toxin known on earth, botulinum toxin
8 serotypes of botulinum toxin: A, B, C, D, E, F, G, H
A, B, E responsible for human botulism
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Laboratory Diagnosis Serology – demonstration of toxin from food, serum or stool of infected individual
Culture – food or stool
Mouse Protection test – mice are injected or inoculated with food extract + antitoxin
animal dies unless protected by antitoxin
Treatment Antibiotics are usually not administered, because usually there are no bacteria and only the
toxin is present.
Hyperimmune Human Globulin
Supportive treatment
Support the airway: Intubation, then attach to a mechanical ventilator
Prevention Proper cooking or sterilization of all canned and vacuum-packed food
0
Food should be heated adequately at 80 C for 5 mins to inactivate toxin
Swollen or bulging canned must be discarded
High risk food includes:
o Homemade canned food
o Spoiled vegetable
o Smoke or salted fish/meat
Clostridium difficile
General Obligate anaerobe
Spore-former found in soil and human GIT
Associated with antibiotic-induced pseudomembranous enterocolitis
Saccharolytic & weakly proteolytic
o Saccharolytic – capable of hydrolyzing complex carbohydrates, with the production of
acid and gas
Part of the normal flora of GIT in 3% of general population
Pathogenesis Antibiotics (Clindamycin, Minocin, Ampicillin) → suppress growth of GIT normal flora →
allowing growth of organism → multiply → produce & secrete toxins:
o Polypeptide A enterotoxin – potent toxin that damages the intestinal mucosa
o Polypeptide B cytotoxin – found in the feces, causing changes in tissue culture cell
Clinical Manifestations Mild diarrhea associated with yellow-white pseudo-membrane plaques
Abdominal cramps
Fever
Antibiotic-associated Colitis
Laboratory Diagnosis In order to label a patient as having pseudomembranous colitis, you have to satisfy the
following criteria:
o Detection of toxin from a stool sample
Cytotoxicity test – Hela cell (+) cytotoxic effect on cultured cell
o Should have an endoscopic observation of the pseudomembranes/microabscesses
o Diarrhea – watery or bloody
o Have been given certain antibiotics (all antibiotics are capable of causing
pseudomembranous colitis)
Biopsy or Sigmoidoscopy
Treatment Symptomatic – withdrawal of antibiotics
Fluid replacement
Metronidazole
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NON-SPOREFORMING ACID FAST RODS GENUS Mycobacterium
Most distinctive property is the characteristic staining Straight or slightly curved rods
o Ziehl-Neelsen Gram (+) acid fast organisms Mycolic acid
o Cold Kinyoun Nonmotile
Difficult to stain Obligate aerobes
Once stained, resist decolorization with acid-alcohol Fastidious
Often referred to as “acid fast bacilli” Species:
Contains a wide range of species, which are either saprophytic (soil) o Mammalian tubercle bacilli
or parasitic (humans) M. tuberculosis
M. bovis
o Leprae bacillus – M. leprae
o Atypical mycobacterium – Runyon’s anonymous group
Mycobacterium tuberculosis
General Koch’s bacillus (1882)
Two varieties:
Differences Mycobacterium tuberculosis Mycobacterium tuberculosis
variant hominis (human) variant bovis (animals)
Animal Pathogenicity
Rabbit - +
Guinea Pig + +
Growth in Lowenstein-Jensen Eugonic (grows luxuriantly) Dysgonic (sparse growth)
(L-J) medium at 37 C
Niacin test + -
Morphology Slender, straight or slightly curved Gram (+) rod with rounded ends
No characteristics cell arrangement – singly, irregular clusters, branching, or with
serpentine arrangement
Some are beaded or banded polyphosphate
Acid fast due to mycolic acid
Much granules (Note: not much like “a lot”, they’re literally called Much granules)
Gram (+) spherical bodies found in the sputum of TB patients
Non-sporeformer, nonmotile, noncapsulated
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Killed by 5% phenol in 24 hours
Killed at pasteurization temperature
Pathogenicity Tuberculosis (Koch’s disease) – chronic granulomatous disease involving the lungs, CNS,
kidneys, or bones
Mode of transmission:
o Inhalation – aerosols; most common
o GIT – ingestion of infected milk or milk products
o Disseminated from the CNS, kidneys, bones
Clinical findings: fever, fatigue, night sweats, weight loss, cough, hemoptysis
Determinants of Pathogenicity Do not produce exotoxin and endotoxin
Virulence of organism is attributed to:
o Trehalose dimycolate – cord factor
Responsible for serpentine growth or arrangement of organism
Can result to tissue damage due to local effect of organism and host defense
that may cause injury at site of infection
o Sulfatides – allows organism to survive intracellularly
Pathogenesis Inhaled aerosols
Engulfed by alveolar macrophages
Bacilli
replicate
Macrophages die
Reactivation Type of TB
The reactivation type is usually caused by tubercle bacilli that have survived from the
primary lesion.
Reactivation tuberculosis is characterized by chronic tissue lesions, formation of tubercles,
caseation, and fibrosis.
Regional lymph nodes are only slightly involved, and they do not caseate.
The reactivation type almost always begins at the apex of the lung, where the oxygen
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tension (PO2) is highest.
These differences between primary infection and reinfection or reactivation are attributed
to: (1) resistance, and (2) hypersensitivity induced by the first infection.
Laboratory Diagnosis After inoculation of specimen in the Mycobacterium Growth Indicator tube (MGIT) kept
in BacTec for 42 days
o If any tube appears positive, it should be subcultured, acid fast stained, and treated as
a presumptive positive.
Microbiological tests – demonstration of organism by acid fast staining
o Direct Smear Microscopy (DSM) – sputum specimen
Sensitivity: 40-70%
Specificity: 90%
Ziehl-Neelsen staining – Hot or Cold (Kinyoun) method
Fluorescence staining – Auramine-Rhodamine, Acridine Orange
Culture on egg-based media – Lowenstein-Jensen medium incubated with 5-10% CO2
Most commonly used media for primary isolation of M. tuberculosis
Before culture, specimen must undergo digestion and decontamination with N-acetyl-
L-cysteine NaOH
Colony characteristics: rough, tough, and buff-colored it takes 4-6 weeks to get
visible colonies
Biochemical testing
o Niacin test (+) canary yellow
M. tuberculosis lacks the enzyme that converts niacin to niacin ribonucleotide
Molecular techniques
o Direct detection of mycobacteria from specimens – Polymerase Chain Reaction (PCR),
Target amplification
o Identification of mycobacteria from culture – PCR-based sequencing, DNA and Gene
probes
o Advantages: Rapid procedure, 3-4 hours
High sensitivity, 1-10 bacilli/mL sputum
o Limitations: Very expensive
Cannot differentiate between living and dead bacilli
Require specialist training and equipments
Tuberculin test – hypersensitivity test
Based on the fact that a person infected with TB develops hypersensitivity to the
protein of the organism
Place an important role in the control of TB
Purified Protein Derivative (PPD): Mantoux method, intradermal infection on the
volar surface of the forearm
Procedure: The test is done by putting a small amount of TB protein under the top
layer of the skin on the inner forearm. If the patient has ever been exposed to TB, the
skin will react to the antigens by developing a firm red bump at the site within 2 days
(48-72 hours).
(+) test presence of 10mm induration
Determines hypersensitivity state of individual to pulmonary TB
Determines whether a person has ever had tuberculosis
Disadvantage: A tuberculin skin test cannot tell how long a person has been infected.
It also cannot tell if the infection is latent (inactive) or active and can be passed to
others.
Direct detection by Nucleic Acid Amplification (NAA) – this test can reliably detect MTB in
specimens within hours, as compared to weeks for culture
Treatment Multiple drug therapy – two or more drugs given together to prevent emergence of
resistant, mutated strains
First line Isoniazid (INH) – Rifampicin – Streptomycin – Ethambutol
Prevention Isoniazid (INH) prophylaxis – for: asymptomatic patients, children exposed to
asymptomatic patient, children with (+) PPD skin test
Bacillus Calmette Guerin (BCG) Vaccine – live attenuated strain of M. bovis with low
degree of virulence
Pasteurization of milk
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Mycobacterium leprae (also, Hansen’s bacillus - 1878)
Morphology Straight or slightly curved acid fast rod
Size: 1-8 um length, 0.3-0.5 um width
Arranged singly, in large masses (globus) or packed inside cells packet of cigarettes
arrangement
Nonmotile, non-sporeformer, noncapsulated
Cell wall structure resembles M. tuberculosis
Cultural Characteristics Efforts to culture the organism in-vitro were unsuccessful
Can be grown experimentally in animals only (mice/armadillo footpads) 24-30 days
Optimum temperature for growth is 26-30 C (psychrophile)
Pathogenicity Leprosy (Hansen’s Disease) – chronic communicable disease
Involves the cooler portion of the body: skin, eyes, nose, pharynx, larynx, nerves
Grows preferentially on the skin and superficial nodes
Man is the only natural host for infection
Obligate intracellular parasite that multiplies very slowly within mononuclear cells,
histiocytes of the skin, and Schwann cells in nerves
Incubation period varies from 3-4 years, to as long as 40 years
Mode of transmission: prolonged contact with infected individuals, respiratory droplets
Site of entry: skin and peripheral nerves, URT and nasal mucosa
Clinical Manifestations Has two forms.
Tuberculoid Lepromatous
Scattered, raised skin lesions with palpable More widespread skin lesion (macular, popular,
thickening of peripheral nerves nodular) accompanied by thickening of earlobes,
forehead and nose Leonine facies
Associated focal area of anesthesia Absent
Few acid fast bacilli seen in lesion, but difficult to Large numbers of acid fast bacilli present in
demonstrate involved skin
Disease is benign, with better prognosis More severe disease, with poor prognosis
Lepromin test (+) Lepromin test (-)
Lepromin test – skin test used to determine the immunologic spectrum of patient
Employs the use of heat-killed suspension of M. leprae prepared from lepromatous
nodule and injected intracutaneously
Two types of reactions observed:
Fernandez reaction (early) – resembles tuberculin reaction, appears in 24-48
hours
Mitsuda reaction (late) – presence of indurated nodule which develops after 3-4
weeks
Determinant of Pathogenicity Reaction of the body to the organism
Laboratory Diagnosis No specific immunologic/serologic test for leprosy diagnosis
Evaluate patient especially hypoesthetic skin lesions
o Microscopic demonstration of acid fast bacilli – from skin scrapings, nasal mucosa, or
biopsy materials
o Culture – footpads of mice
o Phenolase test – demonstrate phenolase from lepromatous nodule produced by M.
leprae
o Polymerase Chain Reaction (PCR)
Lepromin Skin test – to classify the stage of leprosy based on the lepromin reaction
Procedure: A sample of inactivated leprosy-causing bacteria is injected just under the
skin, usually on the forearm. The injection site is labelled and examined after 3 days,
and again after 28 days, to see if there is a reaction.
Treatment Multiple drug therapy (MDT) combination of 2 or more drugs given together to prevent
emergence of drug-resistant, mutated strains
Dapsone, Rifampicin, Clobazamine
Prevention Early detection and isolation of acute cases
Prophylactic chemotherapy – for individuals in close contact with patients
Active immunization with BCG
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ATYPICAL MYCOBACTERIA (Runyon’s Anonymous Group)
Strictly saprophytic Group II: Scotochromogens
Can produce severe and fatal disease in humans Produce pigments only when placed in a dark environment
Classified into four groups according to: Slow-grower, requires 7 or more days to produce visible colonies
o Rate of growth Mycobacterium scrofulaceum
o Pigment production Scrofula cervical lymphadenitis in children
Laboratory Diagnosis
o Bacteriological – acid fast staining Group III: Non-Photochromogens
o Culture Do not produce pigments under any circumstances
o Niacin test (-) negative Slow-grower, requires 7 or more days to produce visible colonies
Mycobacterium avium-intracellulare
Group I: Photochromogens Opportunistic organism causing infection among
Produce yellow-orange pigmented colonies only when exposed to immunocompromised hosts (cancer, AIDS, organ transplant
light patients)
Slow-grower, requires 7 or more days to produce visible colonies
Mycobacterium kansasii Group IV: Rapid-Growers
Disease produced resembles tuberculosis except symptoms are Rapid grower, produce visible colonies in less than 7 days
mild Rarely cause human infections
Mycobacterium marinum Saprophytic in soil and water
Produce granulomatous skin infection swimming pool Mycobacterium fortuitum
granuloma Mycobacterium chelonae
Corynebacterium dipththeriae
Morphology Pleomorphic rod straight or slightly curved, club-shaped
Palisading, or Chinese letter arrangement
Metachromatic (Babes Ernst) granules – responsible for beaded/banded appearance due
to polymerized metaphosphate; serve as a source of energy
Visualized using Loeffler’s methylene blue or Neisser stain
Nonmotile
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Resistance Resistant to light, dessiction, and freezing
Dried pseudomembrane fragments can survive for 14 weeks
Susceptible to disinfectants
Readily killed after exposure to a temperature of 100 C for 1 minute or 58 C for 10 minutes
Disease Diphtheria – human (natural and reservoir host) infection
An infection of local tissue of the URT with production of toxin which causes
systemic effects on the heart and peripheral tissues
Childhood disease 1 to 10 years old
Modes of transmission:
Person to person – directly or indirectly
Aerosol or droplet transmission – most common
Source of infection:
Asymptomatic carrier
Exposure to infected person during incubation period of the disease
Antigenic Structure K Antigen – heat-labile, responsible for the type specificity of the organism
O Antigen – heat-stable, responsible for cross-reactivity of the organism
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Laboratory Diagnosis Bacteriological – swab from nasopharynx, nose and throat Gram stain
Staining with Loeffler’s methylene blue demonstration of metachromatic granules
Culture
Schick test
Toxigenicity test – in vivo: Frasser and Weld, in vitro: Eleks
Treatment Diphtheria antitoxin – to neutralize the toxin in the blood
20,000 to 50,000 units 1m/IV
Penicillin G/Erythromycin – antibiotics
Prevention Active Immunization with diphtheria toxoid (DPT) – given in 4 doses, during infancy at 6-8
weeks
GENUS Listeria
Listeria monocytogenes
General Widely distributed in nature, has some animal reservoirs
Produce human infection with protean manifestations, such as:
o Meningitis
o Infection of the genital tract of pregnant women
o Neonatal infection either before or after delivery
Facultative intracellular organism
Can invade and grow in a variety of mammalian cells including macrophages, epithelial
cells, fibroblasts
Ability to enter the cytoplasm of the cell grow spread
Morphology Small gram (+) rods arranged in short chains, end over end, tumbling arrangement
Size: 0.4-0.5 x 0.5-2.0 um
Actively motile peritrichous flagella
Noncapsulated, nonsporeformer
Determinants of Pathogenicity Endotoxin-like substance in the cell wall (lipopolysaccharide) – with anti-phagocytic
property
Hemolysin-soluble substance secreted during growth – plays an important role in the
pathogenesis of the infection
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Mode of Transmission Direct contact – among high-risk individuals (veterinarians, agriculturist, industrial
workers)
Oral – ingestion of contaminated food, raw vegetables, drinking unpasteurized milk
During delivery – contact of infective secretion
Disease Neonatal infection
o Granulomatous infantiseptica
o Meningitis – acquired during or after birth
Adult infection
o Meningitis – most common
o Septicemia
Laboratory Diagnosis Isolation of the organism from blood, CSF, amniotic fluid, genital tract secretions Gram
staining
Culture – Tryptose medium
Animal Pathogenicity test – Anton/Ocular Rabbit test
Treatment Penicillin G
Prevention No vaccine available
Control of infection includes:
o Elimination of animal reservoir
o Avoid contact with infected animals
GENUS Erysipelothrix
Erysipelothrix rhusiopathiae
Morphology Slender, straight or slightly curved Gram (+) rod
Nonmotile
Nonsporeformer
Microaerophilic
Blood agar – alpha hemolytic
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