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FRESHWATER MYCOLOGY
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FRESHWATER
MYCOLOGY
Perspectives of Fungal Dynamics
in Freshwater Ecosystems
Edited by
Suhaib A. Bandh
Assistant Professor, Environmental Science,
Department of Higher Education,
Government of Jammu and Kashmir, Srinagar, India
Sana Shafi
Assistant Professor,
Department of Environmental Science, Sri Pratap College,
Srinagar, Jammu and Kashmir, India
Elsevier
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Copyright © 2022 Elsevier Inc. All rights reserved.
No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical,
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This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may
be noted herein).
Notices
Knowledge and best practice in this field are constantly changing. As new research and experience broaden our
understanding, changes in research methods, professional practices, or medical treatment may become necessary.
Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using any
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To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume any liability for any
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operation of any methods, products, instructions, or ideas contained in the material herein.
ISBN: 978-0-323-91232-7
v
vi Contents
12. Diseases and infections due 4 Diversity, spatial distribution, and activity of
to freshwater fungi freshwater fungi 254
5 Freshwater fungal biodiversity is controlled
Shikha Pachauri and Ganesh Kumar Maurya
by the environment and governs ecological
1 Introduction 209 functions 255
2 Potential causes of infections and diseases in 6 Conclusions 257
freshwater 210 References 257
3 Fungal infection in freshwater 210
4 The life style of fungal pathogens 211 15. Freshwater fungi in the Amazon
5 Pathogenic Fungi derived from different sources of as a potential source of
freshwater 212 antimicrobials
6 Common fungal infections and diseases 214 Eveleise Samira Martins Canto, Walter Oliva Pinto Filho Segundo,
7 Detection techniques for identification of the Ana Cláudia Alves Cortez, Flávia Rodrigues Barbosa,
freshwater derived fungal pathogens 218 Josiane Santana Monteiro, and João Vicente Braga de Souza
8 Treatment and preventive measures against
freshwater derived fungal infections 219 1 Introduction 261
9 Conclusions 220 2 Aquatic ecosystems in the Amazon 262
References 220 3 Freshwater fungi 263
4 Aquatic fungi as a source of
antimicrobials 266
13. An insight into the study methods 5 Conclusions 269
of aquatic fungi Financing information 269
Elaine Malosso and Iracema H. Schoenlein-Crusius Conflict of interest 269
References 269
1 Introduction 229
2 A little about the classic studies 231 16. Fungi: The indicators of pollution
3 Studies using molecular techniques 233
Ganesh Kumar Maurya and Shikha Pachauri
4 What do the current studies show and where are
we going now? 240 1 Introduction 277
Acknowledgments 241 2 Classification of pollution indicators 277
References 241 3 Significance of biological indicators 278
4 Fungi as an indicator of air pollution 281
14. Metagenomic insights into the 5 Fungi as an indicator of water
fungal assemblages of freshwater pollution 282
6 Fungi as an indicator of soil pollution 284
ecosystems
7 Fungi as an indicator of radioactive
Namrata Deka, Saqib Hassan, Tanveer Ahmed, George Seghal Kiran,
contamination 286
and Joseph Selvin
8 Conclusions 288
1 Introduction 247 Acknowledgment 288
2 Role of Fungi in freshwater ecosystems 249 References 288
3 Linking metagenomics to aquatic microbial
ecology 251 Index 297
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Contributors
Marwa Tamim A. Abdel-Wareth Environmen Peter Convey British Antarctic Survey, NERC,
tal Research Department, Theodor Bilharz Cambridge, United Kingdom; Department of
Research Institute, Giza, Egypt Zoology, University of Johannesburg, Johan
Tanveer Ahmed Department of Biotechnology, nesburg, Gauteng, South Africa
School of Life Sciences, Pondicherry University, Ana Cláudia Alves Cortez Mycology Labo
Puducherry, India ratory, National Institute for Research in the
Yaser Arafath Department of Microbiology, Amazon, INPA, Manaus, Amazonas, Brazil
School of Life Sciences, Pondicherry University, Namrata Deka Jacobs School of Medicine and
Puducherry, India Biomedical Sciences, University at Buffalo,
Julio Arce-Funck Marine and Environmental Sci New York, NY, United States
ences Centre (MARE), Department of Life Sci Hassan Etesami Department of Soil Science
ences, University of Coimbra, Coimbra, Portugal and Engineering, University of Tehran, Tehran,
Ananthapadmanabha Bhagwath Arun Re Iran
search Center, Yenepoya (Deemed to be Uni Aifa Fathima Department of Microbiology,
versity), Mangalore, Karnataka, India School of Life Sciences, Pondicherry University,
Angelika Astaikina The Soil Science Faculty, Puducherry, India
Lomonosov Moscow State University, Moscow, Manuel A.S. Graça Marine and Environmental
Russia Sciences Centre (MARE), Department of Life
Suhaib A. Bandh Environmental Science, Sciences, University of Coimbra, Coimbra,
Department of Higher Education, Government Portugal
of Jammu and Kashmir, Srinagar, India Maria Hanif Lahore College for Women Uni
Flávia Rodrigues Barbosa Institute of Natural, versity, Lahore, Pakistan
Human and Social Sciences, Federal University Maria Hasnain Lahore College for Women Uni
of Mato Grosso, UFMT, Sinop, Mato Grosso, versity, Lahore, Pakistan
Brazil Saqib Hassan Department of Microbiology,
Felix Bärlocher Department of Biology, Mt. School of Life Sciences, Pondicherry University,
Allison University, Sackville, NB, Canada Puducherry; Division of Non-Communicable
Juliana Barros Marine and Environmental Sci Diseases, Indian Council of Medical Research
ences Centre (MARE), Department of Life Sci (ICMR), New Delhi, India
ences, University of Coimbra, Coimbra, Portugal Kishore Souterpet Karamchand Department of
Ayesha Bibi Department of Biotechnology, Biosciences, Mangalore University, Mangalore,
Women University Mardan, Mardan, KPK, Karnataka, India
Pakistan George Seghal Kiran Department of Food
Eveleise Samira Martins Canto Institute of Science and Technology, School of Life Sciences,
Water Science and Technology, Federal Univer Pondicherry University, Puducherry, India
sity of Western Pará, UFOPA, Santarém, Pará, Juan Manuel Lirio Argentine Antarctic Insti
Brazil tute, Buenos Aires, Argentina
ix
x Contributors
Elaine Malosso Centro de Biociências (CB), Sahadevan Seena Marine and Environmental
Departamento de Micologia, Universidade Sciences Centre (MARE), Department of Life Sci
Federal de Pernambuco (UFPE), Recife, ences, University of Coimbra, Coimbra, Portugal
Brazil Walter Oliva Pinto Filho Segundo Mycology
Gretta Lobo Maria Department of Biosciences, Laboratory, National Institute for Research in
Mangalore University; Department of Botany, the Amazon, INPA, Manaus, Amazonas, Brazil
St. Agnes Autonomous College, Mangalore, Joseph Selvin Department of Microbiology,
Karnataka, India School of Life Sciences, Pondicherry University,
Ganesh Kumar Maurya Zoology Section, Puducherry, India
Mahila Mahavidyalaya, Banaras Hindu Uni Nadia Sharif Department of Biotechnology,
versity, Varanasi, Uttar Pradesh, India Women University Mardan, Mardan, KPK,
Raham Mojibi Mycology Research Center, Pakistan
University of Tehran, Tehran, Iran João Vicente Braga de Souza Mycology Labo
Josiane Santana Monteiro Museu Paraense ratory, National Institute for Research in the
Emílio Goeldi – MPEG, Belém, Pará, Brazil Amazon, INPA, Manaus, Amazonas, Brazil
Neelma Munir Department of Biotechnology, Láuren Machado Drumond de Souza Depart
Lahore College for Women University, Lahore, ment of Microbiology, Federal University of
Pakistan Minas Gerais, Belo Horizonte, Minas Gerais,
Joy Ogwugwa Delta State University, Cleve Brazil
land, MS, United States Kandikere Ramaiah Sridhar Department of
Vincent Happy Ogwugwa Department of Biosciences, Mangalore University; Centre for
Microbiology, University of Lagos, Lagos, Environmental Studies, Yenepoya (Deemed to
Lagos, Nigeria be University), Mangalore, Karnataka, India
Shikha Pachauri Nuclear Agriculture and Bio Rostislav Streletskii The Soil Science Faculty,
technology Division, Bhabha Atomic Research Lomonosov Moscow State University, Moscow,
Centre, Trombay; Homi Bhabha National Russia
Institute, Mumbai, Maharashtra, India Naga Mangala Sudheep Department of Plant
Abdullah Kaviani Rad Department of Soil Science, School of Biological Sciences, Central
Science, School of Agriculture, Shiraz Univer University of Kerala, Kasargod, Kerala, India
sity, Shiraz, Iran Huma Waqif Lahore College for Women Uni
Luiz Henrique Rosa Department of Microbiol versity, Lahore, Pakistan
ogy, Federal University of Minas Gerais, Belo Mehdi Zarei Department of Soil Science,
Horizonte, Minas Gerais, Brazil School of Agriculture, Shiraz University,
Vinitha Sadasivam Department of Microbiol Shiraz; Department of Agriculture and Natural
ogy, School of Life Sciences, Pondicherry Uni Resources, Higher Education Center of Eghlid,
versity, Puducherry, India Eghlid, Iran
Iracema H. Schoenlein-Crusius Instituto de Naila Zubair Department of Chemistry, Women
Pesquisas Ambientais (IPA), São Paulo, Brazil University Mardan, Mardan, KPK, Pakistan
About the editors
xi
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Preface
xiii
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Acknowledgments
If every project has its secret inspiration Inevitably, this type of book relies heavily
or at least its one motivation, here that is the on previously published work. We thank all
PEACE of my life. the copyright holders for granting permis-
sion to publish original diagrams and data.
In the name of Allah, the most gracious Our special thanks are due to our copyright
and the most merciful. May the praise of coordinator Praveen Anand who supervised
Allah, in the highest of assemblies, and His all the copyright permissions for the mate-
peace, safety, and security, both in this world rial used in the form of images, etc., in the
and the next, be on Prophet Muhammad production of the book. They all supervised
(peace be upon Him), the best of human- the production of this project with com-
kind, the most respectable personality for mendable attention to all the minute and
whom Allah created the whole universe and vivid details. Our special thanks go to Dr.
the seal of the Prophets and Messengers. We Seena Sahadevan, Prof. K. Sridhar, Dr. Luiz
are highly thankful to Allah who provided Henrique Rosa, Raham Mojibi, D r. Neelma
us with the courage and guidance to under- Munir, Vincent Happy Ogwugwa, Dr. Saqib
take and complete this project with his great Hassan, Abdollah Kaviani, D r. Nadia Sharif,
mercy and benevolence. Dr. Shikha Pachauri, Dr. Elaine Malosso,
First and foremost, we thank all our teach- Dr. Eveleise Samira Martins Canto, and Dr.
ers who held our finger to tread the learning Ganesh Maurya for their valuable contribu-
path and enabled us to compile a book. We tions to the book. We extend our appreciation
deeply thank them for the advice and en- to all the people who assisted us individually
couragement, which guided our personal in completing this project. We are extremely
and professional development. Publication grateful to all the reviewers who provided
of a research article, review article, or book their timely inputs to improve the quality of
requires the efforts of many people besides the chapters. Our special thanks are also due
the authors. We express our special appreci- to all those who have directly or indirectly
ation to Elsevier’s editorial and production worked to complete the project successfully.
staff for their excellent and efficient work. Last but not least, we extend our apprecia-
In particular, we thank Munro Louisa, our tion to our families for their patience and en-
Acquisitions Editor, for her unwavering con- couragement during the compilation of the
fidence in us and Packowska Aleksandra, project. We owe a debt of gratitude to them
our Editorial Project Manager, for her time, for their patient forbearance and unwaver-
guidance, patience, and support. We are ing support.
highly thankful to Anbazhagan Kumar, who
was always there realize the dream of this Suhaib A. Bandh
project. They were there whenever needed. Sana Shafi
xv
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C H A P T E R
1
Aquatic hyphomycete spores:
What do we know, where do we go
from here?
Sahadevan Seenaa, Juliana Barrosa, Manuel A.S Graçaa,
Felix Bärlocherb, and Julio Arce-Funcka
a
Marine and Environmental Sciences Centre (MARE), Department of Life Sciences,
University of Coimbra, Coimbra, Portugal bDepartment of Biology, Mt. Allison
University, Sackville, NB, Canada
1 Introduction
Freshwater is a precious resource constituting only 0.01% of the earth's water and a
home to roughly 100,000 of the 1.8 million known species (Dudgeon et al., 2006). Despite
this bounty of biodiversity, freshwaters are among the most endangered ecosystems due to
anthropogenic pollution and climate change (Dudgeon et al., 2006; Reid et al., 2019). These
threats imperil freshwater biodiversity and ecosystem services (e.g., carbon cycling and food
for humans; Dudgeon, 2019). Globally, 1 in 3 human beings is deprived of clean drinking wa-
ter (World Health Organization & The United Nations Children’s Fund, 2019). Demand for
water is expected to increase exponentially in the coming years for food production, putting
further stress on human access to water and its ecosystem services, as well as jeopardizing the
water supply to other groups of organisms (Falkenmark, 2013).
Freshwater and terrestrial ecosystems are closely linked by nutrient cycling and water
supply; therefore, land use management practices will impact freshwaters (Bossio, Geheb,
& Critchley, 2010). Similar to the European Water Frame Directive (European Commission,
2000), several international frameworks have been suggested at the global level to sustain
freshwaters for ecosystem services and human well-being (Harrison et al., 2016; van Rees
et al., 2021). However, the purpose of the management policies will be difficult to formulate
and to meet if our knowledge of freshwater ecosystem functioning is limited.
Leaf litter input from the riparian zone is the main energy source for low order streams.
The decomposition of this litter is one of the most studied functional processes in freshwater
ecosystems. Around 80% of the riverine networks consist of low order streams, and the total
area covered by rivers is ~ 0.5% of the Earth's surface (Gleick, 1996). It is thus not surprising
that attention has been largely monopolized by this ecosystem process in the last decades.
Several reviews (Abelho, 2001; Cummins, 1974; Gessner et al., 2010; Graça, 2001; Kaushik &
Hynes, 1971; Marks, 2019), books and book chapters (Allan & Castillo, 2007; Bärlocher, 1992;
Bärlocher, Gessner, & Graça, 2021; Feio & Ferreira, 2019; Swan, Boyero, & Canhoto, 2021) have
been dedicated to explaining how terrestrial carbon (allochthonous organic matter), processed
by stream inhabitants from different taxonomical groups, is incorporated into aquatic systems.
In headwater streams, leaf litter decomposition proceeds through sequential, partly
overlapping steps that can be summarized as follows (Fig. 1.1): Initially, coarse particulate
organic matter (CPOM; > 1 mm), the basal nutrient and energy resource derived from the
riparian zone, enters the streams (Cummins, 1974). Soluble molecules are quickly leached
from the CPOM, joining the dissolved organic matter (DOM; < 50 μm) pool of the stream. At
this juncture, microbes, mainly aquatic hyphomycetes (AQHs), colonize the CPOM. These
fungi are equipped with enzymes attacking the leaves' structural polymers. The combined
action of microbial decomposers (mainly AQHs) and feeding activities of shredders produce
smaller particles of organic matter, which join the fine particulate organic matter pool (FPOM;
50 μm–1 mm). Fungi use the energy gained from their use of leaf components to build up their
biomass and release numerous asexual spores (conidia). Fungal colonization makes the leaf
more attractive to leaf-shredding invertebrates, which generally lack suitable degradational
FIG. 1.1 Schematic representation of leaf litter decomposition process in forested stream. No Permission Required.
1 Introduction 3
enzymes. Much of this attraction is due to the build-up of fungal biomass; in a recent study,
fungal carbon was shown to be the largest contributor to the growth of detritivores larvae of
Pycnopsyche sp. (Price, Harper, Francoeur, Halvorson, & Kuehn, 2021). The preoccupation of
freshwater scientists with this ecosystem process has led to some epic analogies such as “the
peanut butter on nutritionally unsuitable crackers,” referring to microbial colonization (pea-
nut) of allochthonous organic matter (cracker).
The interactions between detritus – microbial decomposers – litter-consuming detritivores
(Graça et al., 2015), provide an opportunity to methodically manipulate the components of
this trilogy. Numerous studies have focused on selected aspects. For instance, Lecerf and
Chauvet (2008) studied to what extent intraspecific leaf traits variability in Alnus glutinosa,
mainly phosphorus and lignin content, affects leaf litter decomposition. The main indicator
used to evaluate outcomes was the decomposition rate, reflecting the microbial (mainly fun-
gal) activity over time. Other studies examined if additional plant traits, such as the capacity
of fixing nitrogen affected leaf litter decomposition (Tonin et al., 2017). Again, microbial de-
composition rate was used as the main indicator. Overall, a substantial amount of knowledge
on the importance of various factors and their combinations on the leaf litter decomposi-
tion process has been accumulated. The impacts of leaf litter diversity (Ferreira, Encalada,
& Graça, 2012), fungal diversity (Seena, Casotti, & Cornut, 2020) and community composi-
tion (Seena, Bärlocher, et al., 2019), temperature (Ferreira & Chauvet, 2011b), nutrients (Gulis,
Ferreira, & Graça, 2006), oxygen (Medeiros, Pascoal, & Graça, 2009), light (Rajashekhar &
Kaveriappa, 2000), pesticides (Cornejo et al., 2020), metals (Arce-Funck et al., 2016, 2018) and
plastics (Seena, Graça, Bartels, & Cornut, 2019) are well documented. However, there is little
information regarding the fate of AQH spores during and after decomposition.
It has been estimated that AQH biomass accounts for ≥ 10% of leaf litter mass; on average
50% of the assimilated carbon is dispensed as asexual spores (conidia) (Gessner & Chauvet,
1997), with a single spore weighing approximately 200 pg (Gessner, 1997). If we assume a
median value for direct litter input of 454 g m− 2 year− 1 into low order streams across biomes,
and an additional lateral input of up to 28% of direct inputs (Elosegi & Pozo, 2020), a rough
estimate of total litter input reaches up to 581 g m− 2 year− 1. On average, approximately 15%
of litter mass is leached within a few hours to days (Bärlocher, 2020a); the remaining leaf
litter mass is shredded by invertebrates (42%) and decomposed by AQHs (58% ± 3% S.E.; i.e.
286 g m− 2 year− 1; mean of 73 studies; Table S1). If 50% of the assimilated carbon is invested in
spores, then there is a massive production of 143 g spores m− 2 year− 1 which corresponds to
25% of litter inputs (Table S2). Yet, the potential magnitude of spores as a source of nutrients
and essential molecules in headwater stream food webs has been ignored. Additionally, we
do not know whether spores generated under different nutrient conditions (Tonin et al., 2017)
differ in their intrinsic composition (nutrients, lipids, carbohydrates), or performance (such
as timing of maturation and germination; Gulis et al., 2017).
We are uncertain about the individual and combined effects of environmental factors (such
as temperature and nutrients; Gossiaux et al., 2020) on future generations of spores and their
enzymatic and metabolic machinery. There is little evidence that community manipulation
(dominance ratios; Ferreira et al., 2012) affects the spores' competitiveness, or, whether it in-
duces intraspecific changes (e.g. increasing metabolism or growth) that may improve or reduce
colonization performances by individual species. Adaptations in experimental approaches
are important to holistically understand the ecology of spores in a changing environment.
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[Here followed the “Liberal Republican Platform;” which see
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The Republican party of the United States, assembled in national
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announces its position upon the questions before the country;
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by interference with rights not surrendered by the people to either
the state or national government.
17. It is the duty of the general government to adopt such measures
as may tend to encourage and restore American commerce and
shipbuilding.
18. We believe that the modest patriotism, the earnest purpose, the
sound judgment, the practical wisdom, the incorruptible integrity,
and the illustrious services of Ulysses S. Grant have commended him
to the heart of the American people; and with him at our head, we
start to-day upon a new march to victory.
19. Henry Wilson, nominated for the Vice-Presidency, known to
the whole land from the early days of the great struggle for liberty as
an indefatigable laborer in all campaigns, an incorruptible legislator
and representative man of American institutions, is worthy to
associate with our great leader and share the honors which we pledge
our best efforts to bestow upon them.
1876.—Republican Platform,
1876.—Democratic Platform.
1878.—National Platform.