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06 Science & Technology - PRRC 2024
06 Science & Technology - PRRC 2024
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Contents
1. Basics ................................................................................................................................................................................................................. 2
DNA.......................................................................................................................................................................................................................... 2
RNA .......................................................................................................................................................................................................................... 2
GENOME SEQUENCING ............................................................................................................................................................................. 3
1.2 Protein synthesis ...................................................................................................................................................................................... 3
Transcription ..................................................................................................................................................................................................... 3
Translation .......................................................................................................................................................................................................... 3
Recombinant DNA technology ..................................................................................................................................................................... 4
2. Gene editing .................................................................................................................................................................................................. 5
How gene editing is done ...................................................................................................................................................................... 6
Genome Editing Techniques .................................................................................................................................................................... 6
CRISPR-cas9 technology ............................................................................................................................................................................ 7
Types of gene editing .................................................................................................................................................................................... 7
Types of cells (from perspective of Gene editing) ............................................................................................................................ 7
Gene therapy ..................................................................................................................................................................................................... 9
GM crops .............................................................................................................................................................................................................. 9
Animal cloning ....................................................................................................................................................................................................... 9
3- Parent baby .................................................................................................................................................................................................11
GM crops in India ..........................................................................................................................................................................................13
Stem cells ................................................................................................................................................................................................................13
Stem cell therapy ...........................................................................................................................................................................................14
3. Virus, Infection and Immune system ............................................................................................................................................15
How a virus infects the body? ................................................................................................................................................................15
Immunity ............................................................................................................................................................................................................15
Rapid antigen test for COVID .................................................................................................................................................................16
PCR reaction (RT PCR Test - Reverse Transcription-Polymerase Chain Reaction)...............................................17
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1. Basics
DNA
Nucleic acid present in all organism: in the form of DNA and RNA.
The structure of DNA defines the basic genetic makeup of the body.
It carries and transmits the hereditary material/genetic instruction from parents their generation.
Works for production of proteins.
Structure of DNA
o The DNA molecule consists of two strands that wind around one another to form a shape known as a
double helix.
o Each strand has a backbone made of alternating sugar (deoxyribose) and phosphate groups.
o Attached to each sugar is one of four bases--adenine (A), cytosine (C), guanine (G), and thymine (T).
o The two strands are held together by bonds between the bases; adenine bonds with thymine, and
cytosine bonds with guanine.
Application of DNA-
o Solving crimes
o Identifying human remains
o Testing for paternity
o Genetic testing.
o Develops genetically transformed plants.
RNA
Structure of RNA
o RNA consists of ribose nucleotides (nitrogenous bases appended to a ribose sugar) attached by
phosphodiester bonds, forming strands of various lengths.
o The nitrogenous bases in RNA are adenine, guanine, cytosine, and uracil, which replaces thymine in DNA.
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Utility of RNA
o Helps in synthesis of protein in our body.
o Production of new cells in human body.
o Translation of DNA into proteins.
o Messenger between ribosome and the DNA.
Types of RNA
o tRNA (transfer RNA)- choose the right protein required by the body , which then helps the ribosomes.
o rRNA (ribosomal RNA)- synthesis and translation of m RNA into proteins.
o mRNA ( messenger RNA)-transfers the genetic material to ribosomes and pass the instructions about
the type proteins, necessary for blood cells.
o Genome: A genome is the complete set of genetic information in an organism. It provides all of the
information the organism requires to function.
o Transcriptome: The term "transcriptome" can also be used to describe the array of mRNA transcripts
produced in a particular cell or tissue type. So a transcriptome is the full range of messenger RNA, or
mRNA, molecules expressed by an organism.
GENOME SEQUENCING
All living things (bacteria, plants, and mammals) have a distinct genetic code, or genome, made up of
nucleotide bases (A, T, C, and G). An organism's own DNA fingerprint, or pattern, can be detected if you know
the bases' sequence.
Sequencing is the process of establishing the order of bases. An organism's genome's base order can be
determined in one step via a laboratory approach called whole genome sequencing.
Transcription
o It is the transfer of genetic instructions in DNA to mRNA in the nucleus.
o After the mRNA is processed, it carries the instructions to a ribosome in the cytoplasm.
o Thus, transcription is regarded as the first step of gene expression.
Translation
o Translation occurs at the ribosome, which consists of rRNA and proteins
o The instructions in mRNA are read, and tRNA brings the correct sequence of amino acids to the ribosome.
o Then, rRNA helps bonds form between the amino acids, producing a polypeptide chain.
o After a polypeptide chain is synthesized, it may undergo additional processing to form the finished
protein.
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o Exonucleases remove nucleotides from the ends of the DNA whereas endonucleases make cuts at specific
positions within the DNA.
o Restriction endonucleases are used in genetic engineering to form 'recombinant' molecules of DNA,
which are composed of DNA from different so urces/genomes.
The two core techniques that enabled birth of modern biotechnology are:
Genetic engineering: Techniques to alter the chemistry of genetic material (DNA and RNA) to introduce these
into host organisms and thus change the phenotype of the host organism.
Bioprocess engineering: Maintenance of sterile (microbial contamination-free) ambience in chemical
engineering processes to enable growth of only the desired microbe/eukaryotic cell in large quantities for
the manufacture of biotechnological products like antibiotics, vaccines, enzymes, etc.
It is a process of changing an
organism’s DNA. Using this genetic
material is added, removed or
altered at specific location in the
genome.
How gene editing is done
Enzymes which cut DNA are known
as engineered nucleases.
It is performed using enzymes,
particularly nucleases whose
purpose is to target a specific DNA
sequence, where they introduce
cuts into the DNA strands which
enables the removal of existing DNA
and the insertion of replacement DNA.
Applications-
1. Treating inherited diseases sickle cell anemia
2. Helps to understand what specific genes do.
3. Prevents inheritance of genetic diseases.
4. Generates more resilient crops.
5. Detecting species in environment.
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o ZFNs are fusions between a custom-designed Cyst-His2 zinc-finger protein and the cleavage domain
of the FokI restriction endonuclease.
o FokI cleavage domain, which cuts DNA within a five-to seven-bp spacer sequence that separates two
flanking zinc-finger binding sites.
Homing endonucleases or mega nucleases:
o Homing endonucleases, also known as mega nucleases.
o These enzymes make extensive sequence-specific contacts with their DNA substrate.
o However, unlike ZFNs and TALENs, the binding and cleavage domains in homing endonucleases are
not modular.
o This overlap in form and function makes their repurposing challenging, and limits their utility for more
routine applications of genome editing.
CRISPR-cas9 technology
It is part of adaptive immunity system used by
bacterial cells to recognize and destroy viral
DNA.
CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats): They are sections
of DNA, containing short repetitions of base
sequences followed by spacer DNA segments.
CAS-9 (CRISPR-associated protein 9): It is an
enzyme. It relies on guide RNA to find the DNA
sequence of interest. It will then introduce a
double strand break at a specific location
within a strand of DNA.
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Any cell other than germ They can divide through Female gametes are called ova or egg
cells (sperm and egg), mitosis single cell cells, and male gametes are called
gametocytes (cells that divided into two sperm.
divide to form germ identical daughter cells. Gametes these are haploid cells,
cells), and Limitlessly to replenish and each cell carries only one copy of
undifferentiated stem other cell types of each chromosome.
cells are known as multi-cellular Gamete is capable of fusing with
somatic cells. organisms throughout another haploid reproductive cell to
Somatic cells are not their life. form a diploid zygote. The zygote is
capable of producing After stem cell division, formed by the fusion (or combining)
offspring. But, they form each newly produced of two gametes, i.e. male gamete and
all the internal organs cell can either remain as female gamete. This union of gametes
and tissues and a stem cell or resulting in a zygote is called
contribute to their differentiate to form any fertilization.
functionalities. other cell type with These reproductive cells are
They are responsible for more defined functions, produced through meiosis.
growth, repair and such as muscle cell,
regeneration. blood cell, or neural cell.
Some of the specialized Types of stem cells:
somatic cells are: - Embryonic Stem
- Skin cells Cells.
- Muscle cells - Embryonic germ
- Nerve cells cells.
- Blood cells. - Adult Stem Cells.
Application –
- Treatment of brain
diseases.
- Treatment of blood
diseases.
- Treatment of
cardiovascular.
- Tissue regeneration.
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Gene therapy
It is a therapy that uses genes to
prevent diseases.
It might allow doctors to treat a
disorder by inserting a gene into
a patients cells instead of using
drugs or surgery.
Types of gene therapy- somatic
cell gene therapy and germline
gene therapy.
Advantages
o Gene therapy has the
potential to eliminate
and prevent hereditary
disease.
o It is possible to cure
heart diseases, cancer
and AIDS.
o It can be used to discard diseases from the future generation.
GM crops
Genetically modified plants/crops using genetic engineering methods.
Crops are genetically modified in order to introduce a trait with one of these properties –
o To increase the nutritional content, which the soil cannot provide.
o To increase the crop yield.
o Make them resistant to harsh atmospheric /environmental conditions such as high/low temperature,
salinity.
o To make them insect resistant.
Animal cloning
Cloning – it is the process of generating identical copy of a cell or an organism.
Animal cloning
Procedure of creating a whole new multi-cellular organism which is genetically identical to original
organism.
Non-sexual process
No fertilization or inter-gamete contact takes place.
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Molecular cloning
- Isolation of DNA sequence from any species (often a gene) in its insertion into a vector (host bacterium)
for propagation without alteration.
Cellular cloning
- Copies of cells are made resulting in the formation of identical cells from a single cell. This type of
cloning is used in stem cell research.
Organism cloning.
- A multi-cellular organism is created, genetically identical to other organism.
Types of cloning
Gene cloning
- It creates copies of genes or segments of DNA.
Reproductive cloning
- It involves the implantation of a cloned embryo into a real or an artificial uterus. The embryo develops
into a fetus that is genetically identical to the donor of the original nucleus.
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3- Parent baby
A baby in which the vast majority of nuclear DNA comes from the mother and the father and a small amount
of mitochondrial DNA comes from a female donor.
This reproductive technology focuses on reducing the effects of mutations that occur in the DNA of
mitochondria, which reside in cytoplasm. This could prevent the transmission to their offspring of
mitochondria diseases.
There are two main techniques involved:
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Pronuclear transfer:
o At the time of fertilization,
genetic material is fused.
One set comes from the
egg and another comes
from dad’s sperm.
o At early stage in
development, the two (egg
and sperm) have not yet
fused into a single
nucleus. This is called
Pronuclei.
o Pronuclei is the central,
DNA-containing parts of
fertilized eggs.
o In this technique
researchers fertilize the mother mouse’s egg and a donor egg at the same time. The pronuclei are
removed from the donor’s fertilized egg and discarded. These are then transferred to an egg cell
containing a healthy mitochondria.
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GM crops in India
BT COTTON
o MAHYCO: Maharashtra hybrid
corporation released first cotton
hybrid MECH1 in 1989.
o BT COTTON was the first genetically
modified crop which got commercially
accepted in 2002.
o It is developed with resistance to the
pink bollworm pest.
o Done by genes (cry1Ab and cry2Bc)
inserted from bacterium bacillus
thuringiensis (Bt).
HTBT COTTON
o Herbicide resistant BT cotton.
o Inserted with ‘Cp4-Epsps’ from soil
bacterium, agro bacterium
tumefaciens glyphosate (modified
protein)makes it herbicide resistant.
o Not legal in India.
Bt BRINJAL
o Modified by inserting a gene from the
soil bacterium BT which has insecticidal property.
o The gene leads to dysfunction of the digestive system of insects who feeds on the crop. And hence they die.
o Developed by Maharashtra hybrid Seeds Company.
o Grown majorly in Andhra Pradesh, Madhya Pradesh, Tamil nadu.
*only GM COTTON is allowed presently in India.
Stem cells
Cells are usually of two types- differentiated and undifferentiated.
Differentiated cells- these are specialized cells to perform a unique function in the body.
Undifferentiated cells- these are responsible for replenishing old, injured or dead cells.
Stem cells are undifferentiated cells with the capacity to both differentiate and multiply into the 200 cells
type that form a human being.
There are two categories of stem cells –adult stem cells and embryonic stem cells.
Embryonic stem cells-
1. Found in the three germ layer of the embryo.
2. Inner cell mass of the embryo contains embryonic stem cells
3. Embryonic stem cells are the most potent, as their job is to become every type of cell in the body.
The full classification includes:
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Totipotent: These stem cells can differentiate into all possible cell types. The first few cells
that appear as the zygote starts to
divide are totipotent.
Pluripotent: These cells can turn into
almost any cell. Cells from the early
embryo are pluripotent.
Multipotent: These cells can
differentiate into a closely related
family of cells. Adult hematopoietic
stem cells, for example, can become
red and white blood cells or platelets.
Oligopotent: These can differentiate
into a few different cell types. Adult
lymphoid or myeloid stem cells can do
this.
Embryonic stem cells are considered pluripotent instead of totipotent because they cannot
become part of the extra-embryonic membranes or the placenta.
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pathogens; mucus coating (epithelium) is present in gastrointestinal, respiratory tracts which trap the
microbes entering our body.
o Cellular barrier- at the cellular level, barriers consist of cells that are tightly held together to prevent
invaders from crossing through to deeper tissue.
o Physiological barrier- saliva in mouth, tears in eyes, acid in stomach.
Acquired immunity
It is developed by the host in its body after exposure to suitable antigen. It is pathogen specific and is
characterized by memory.
When a pathogen enters a body for the first time body produces a response primary response.
When the body encounters the same pathogen again a highly intensified secondary/anamestic response is
observed.
The primary and secondary immune response is carried out with the help of two special type of lymphocytes
present in our blood.
Here, B-lymphocytes produce an army of protein in response to pathogens into our blood to fight with them.
T-lymphocytes do not secrete antibodies but help B-cells to produce them.
These proteins are called antibodies.
Types of acquired immunity
o Two types active and passive immunity.
o Active immunity: induced by natural exposure to a pathogen or by vaccination. Can be categorized into
two types- naturally acquired and artificially acquired active immunity.
o Passive immunity: it is achieved by transfer of immune products, such as antibody or sensitized T-cells,
from an immune individual to non-immune one. two types- naturally
o Acquired and artificially acquired passive immunity.
Rapid antigen test for COVID
Rapid or fast COVID-19 test is a viral test, one of the two types of tests used to detect COVID-19.
Rapid antigen tests are considered to be one of the simplest and quickest ways to test for COVID-19.
Antigen any substance that the body recognizes as harmful or foreign, which induces the immune system
to produce antibodies against it.
Rapid antigen tests identify protein fragments on the surface of the coronavirus to identify the presence of
the pathogen amongst people doing the test. Samples are taken from subjects by swabbing inside the nose or
mouth.
procedure:
- Collect the sample by swabbing and rotating the cotton swab inside both nostril
- Place the swab inside the testing well
- Add the liquid testing solution
- Wait for 15 minutes to get a result
In comparison to PCR tests these are less accurate.
Advantage-
- Testing can be done outside the laboratory.
- Can be performed by the general public.
- Comparatively inexpensive.
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Advantages-
- Small amount of DNA is required
- Result is obtained quickly and accurately.
- Not necessary to use radioactive material.
- Can be used to detect point mutations.
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