Professional Documents
Culture Documents
Full download Fundamentals and Applications of Fourier Transform Mass Spectrometry 1st Edition Philippe Schmitt-Kopplin file pdf all chapter on 2024
Full download Fundamentals and Applications of Fourier Transform Mass Spectrometry 1st Edition Philippe Schmitt-Kopplin file pdf all chapter on 2024
https://ebookmass.com/product/photoionization-and-photo-induced-
processes-in-mass-spectrometry-fundamentals-and-applications-
ralf-zimmermann/
https://ebookmass.com/product/heat-and-mass-transfer-
fundamentals-and-applications-6th-edition-yunus-a-cengel/
https://ebookmass.com/product/ambient-ionization-mass-
spectrometry-in-life-sciences-principles-and-applications-kei-
zaitsu-editor/
https://ebookmass.com/product/applications-in-high-resolution-
mass-spectrometry-food-safety-and-pesticide-residue-analysis-1st-
edition-romero-gonz-lez/
Hyphenations of Capillary Chromatography with Mass
Spectrometry 1st Edition Peter Q. Tranchida (Editor)
https://ebookmass.com/product/hyphenations-of-capillary-
chromatography-with-mass-spectrometry-1st-edition-peter-q-
tranchida-editor/
https://ebookmass.com/product/heat-and-mass-transfer-
fundamentals-and-applications-5th-edition-ebook-pdf-version/
https://ebookmass.com/product/introduction-to-spatial-mapping-of-
biomolecules-by-imaging-mass-spectrometry-bindesh-shrestha/
https://ebookmass.com/product/high-throughput-mass-spectrometry-
in-drug-discovery-1-edition-chang-liu/
https://ebookmass.com/product/nanofluids-for-heat-and-mass-
transfer-fundamentals-sustainable-manufacturing-and-applications-
bharat-bhanvase/
FUNDAMENTALS
AND
APPLICATIONS
OF FOURIER
TRANSFORM MASS
SPECTROMETRY
FUNDAMENTALS
AND
APPLICATIONS OF
FOURIER
TRANSFORM MASS
SPECTROMETRY
Edited by
BASEM KANAWATI
Analytical Biogeochemistry, Helmholtz Zentrum
M€
unchen, Neuherberg, Germany
PHILIPPE SCHMITT-KOPPLIN
Analytical Biogeochemistry, Helmholtz Zentrum
M€unchen, Neuherberg, Germany
Analytical Food Chemistry, Technical University of Munich,
Freising, Germany
Elsevier
Radarweg 29, PO Box 211, 1000 AE Amsterdam, Netherlands
The Boulevard, Langford Lane, Kidlington, Oxford OX5 1GB, United Kingdom
50 Hampshire Street, 5th Floor, Cambridge, MA 02139, United States
© 2019 Elsevier Inc. All rights reserved.
No part of this publication may be reproduced or transmitted in any form or by any means, electronic
or mechanical, including photocopying, recording, or any information storage and retrieval system,
without permission in writing from the publisher. Details on how to seek permission, further
information about the Publisher’s permissions policies and our arrangements with organizations
such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our
website: www.elsevier.com/permissions.
This book and the individual contributions contained in it are protected under copyright by the
Publisher (other than as may be noted herein).
Notices
Knowledge and best practice in this field are constantly changing. As new research and experience
broaden our understanding, changes in research methods, professional practices, or medical
treatment may become necessary.
Practitioners and researchers must always rely on their own experience and knowledge in evaluating
and using any information, methods, compounds, or experiments described herein. In using such
information or methods they should be mindful of their own safety and the safety of others, including
parties for whom they have a professional responsibility.
To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume
any liability for any injury and/or damage to persons or property as a matter of products liability,
negligence or otherwise, or from any use or operation of any methods, products, instructions, or ideas
contained in the material herein.
Library of Congress Cataloging-in-Publication Data
A catalog record for this book is available from the Library of Congress
British Library Cataloguing-in-Publication Data
A catalogue record for this book is available from the British Library
ISBN: 978-0-12-814013-0
Jeffery N. Agar
Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA,
United States
Deborah V.A. de Aguiar
Chemistry Institute, Federal University of Goiás, Goi^ania, Brazil
Michaela Aichler
Research Unit Analytical Pathology, Helmholtz Zentrum M€
unchen, German Research
Center for Environmental Health, Neuherberg, Germany
Herve Alexandre
UMRPAM University of Burgundy/Agrosup Dijon, Institut Universitaire de la Vigne et du
Vin, Jules Guyot, Dijon, France
João Francisco Allochio Filho
Laboratory of Petroleology and Forensic Chemistry, Department of Chemistry, Federal
University of Espı́rito Santo, Vitória, Brazil
I. Jonathan Amster
Department of Chemistry, University of Georgia, Athens, GA, United States
Frederic Aubriet
Laboratory of Chemistry and Physics—Multi-Scale Approach of Complex Systems, FR 2843
Jean Barriol Institut, FR 3624 French High Field FT-ICR Mass Spectrometry Network,
Lorraine University, ICPM, Metz, France
Konstantin Ayzikov
Thermo Fisher Scientific, Bremen, Germany
Vincent Carre
Laboratory of Chemistry and Physics—Multi-Scale Approach of Complex Systems, FR 2843
Jean Barriol Institut, FR 3624 French High Field FT-ICR Mass Spectrometry Network,
Lorraine University, ICPM, Metz, France
Sebastian Dillinger
Fachbereich Chemie and Forschungszentrum OPTIMAS, Technical University
Kaiserslautern, Kaiserslautern, Germany
Jiana Duan
Department of Chemistry, University of Georgia, Athens, GA, United States
Michael L. Easterling
Bruker Daltonics Inc., Billerica, MA, United States
François Fenaille
Pharmacology and Immunoanalysis Unit (SPI), CEA, INRA, Paris-Saclay University,
Gif-sur-Yvette, France
xiii
xiv Contributors
Francisco Fernandez-Lima
Department of Chemistry and Biochemistry; Biomolecular Sciences Institute, Florida
International University, Miami, FL, United States
Federico Floris
Department of Chemistry, University of Warwick, Coventry, United Kingdom
Lena Gmelch
Comprehensive Foodomics Platform, Analytical Food Chemistry, Technical University
Munich, Freising, Germany
Michael Gonsior
University of Maryland Center for Environmental Science, Chesapeake Biological
Laboratory, Solomons, MD, United States
Marina Gotthardt
Comprehensive Foodomics Platform, Analytical Food Chemistry, Technical University
Munich, Freising, Germany
Regis D. Gougeon
UMRPAM University of Burgundy/Agrosup Dijon, Institut Universitaire de la Vigne et du
Vin, Jules Guyot, Dijon, France
Dmitry Grinfeld
Thermo Fisher Scientific, Bremen, Germany
Daniel Hemmler
Research Unit Analytical BioGeoChemistry, Helmholtz Zentrum M€ unchen, Neuherberg;
Comprehensive Foodomics Platform, Analytical Food Chemistry, Technical University
Munich, Freising, Germany
Jasmine Hertzog
Laboratory of Chemistry and Physics—Multi-Scale Approach of Complex Systems, FR 2843
Jean Barriol Institut, FR 3624 French High Field FT-ICR Mass Spectrometry Network,
Lorraine University, ICPM, Metz, France; Comprehensive Foodomics Platform, Analytical
Food Chemistry, Technical University Munich, Freising; Research Unit Analytical
BioGeoChemistry, Helmholtz Zentrum M€ unchen, Neuherberg, Germany
Christophe Junot
Pharmacology and Immunoanalysis Unit (SPI), CEA, INRA, Paris-Saclay University,
Gif-sur-Yvette, France
Basem Kanawati
Research Unit Analytical BioGeoChemistry, Helmholtz Zentrum M€
unchen, Neuherberg,
Germany
Yury I. Kostyukevich
Skolkovo Institute of Science and Technology Novaya St. Russian Federation, Russia
Sergey V. Kovalev
Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow, Russia
Anton N. Kozhinov
Spectroswiss, EPFL Innovation Park, Lausanne, Switzerland
Contributors xv
Lisa Kreutzer
Research Unit Analytical Pathology; Research Unit of Radiation Cytogenetics & Research
Unit Analytical Pathology, Helmholtz Zentrum M€ unchen, German Research Center for
Environmental Health, Neuherberg, Germany
Valdemar Lacerda, Jr.
Laboratory of Petroleology and Forensic Chemistry, Department of Chemistry, Federal
University of Espı́rito Santo, Vitória, Brazil
Albert T. Lebedev
Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow, Russia
Youzhong Liu
UMRPAM University of Burgundy/Agrosup Dijon, Institut Universitaire de la Vigne et du
Vin, Jules Guyot, Dijon, France
Alexander Makarov
Thermo Fisher Scientific, Bremen, Germany
Franco Moritz
Research Unit Analytical BioGeoChemistry, Helmholtz Zentrum M€
unchen, Neuherberg,
Germany
Konstantin O. Nagornov
Spectroswiss, EPFL Innovation Park, Lausanne, Switzerland
Gereon Niedner-Schatteburg
Fachbereich Chemie and Forschungszentrum OPTIMAS, Technical University
Kaiserslautern, Kaiserslautern, Germany
Eugene N. Nikolaev
Skolkovo Institute of Science and Technology Novaya St. Russian Federation, Russia
Peter B. O’Connor
Department of Chemistry, University of Warwick, Coventry, United Kingdom
Igor Pereira
Chemistry Institute, Federal University of Goiás, Goi^ania, Brazil
Wanderson Romão
Laboratory of Petroleology and Forensic Chemistry, Department of Chemistry,
Federal University of Espı́rito Santo, Vitória; Federal Institute of Espı́rito Santo,
Vila Velha; National Institute of Forensic Science and Technology (INCT Forensic),
Vitória, Brazil
Chloe Roullier-Gall
UMRPAM University of Burgundy/Agrosup Dijon, Institut Universitaire de la Vigne et du
Vin, Jules Guyot, Dijon, France
Michael Rychlik
Comprehensive Foodomics Platform, Analytical Food Chemistry, Technical University
Munich, Freising, Germany; Centre for Nutrition and Food Sciences, Queensland Alliance
for Agriculture and Food Innovation (QAAFI), University of Queensland, Brisbane,
Australia
xvi Contributors
Philippe Schmitt-Kopplin
Research Unit Analytical BioGeoChemistry, Helmholtz Zentrum M€ unchen, Neuherberg;
Comprehensive Foodomics Platform, Analytical Food Chemistry, Technical University
Munich, Freising, Germany
J€
org-Peter Schnitzler
Helmholtz Zentrum M€ unchen, Institute of Biochemical Plant Pathology, Research Unit
Environmental Simulation, Neuherberg, Germany
Yury O. Tsybin
Spectroswiss, EPFL Innovation Park, Lausanne, Switzerland
Gessica Vasconselos
Chemistry Institute, Federal University of Goiás, Goi^ania, Brazil
Boniek G. Vaz
Chemistry Institute, Federal University of Goiás, Goi^ania, Brazil
Joelle Vinh
Laboratory of Biological Mass Spectrometry and Proteomics, CNRS USR 3149, ESPCI
Paris, PSL University, Paris; TGE FT-ICR CNRS, France
Gleb Vladimirov
Skolkovo Institute of Science and Technology Novaya St. Russian Federation, Russia
Axel Karl Walch
Research Unit Analytical Pathology, Helmholtz Zentrum M€
unchen, German Research
Center for Environmental Health, Neuherberg, Germany
Karl Peter Wanczek
Institute of Inorganic and Physical Chemistry, University of Bremen, Bremen, Germany
Foreword
This book provides a wide-ranging description of the current state of the art
in Fourier transform mass spectrometry. As described in several chapters,
beginning in late 1973 with the first FT ion cyclotron resonance mass spec-
trum (showing just a single CH+4 peak), the field has since exploded, with
installation of nearly 1000 FT-ICR MS plus several thousand orbitrap
instruments.
FT mass analyzers offer the highest mass resolution (e.g., baseline sepa-
ration of ions differing in mass by less than the mass of an electron) and mass
accuracy (mass error as low as a few ppb). Those figures of merit have
recently been improved by increased magnetic field strength (FT-ICR)
or smaller-size ion trap (orbitrap), as well as phase correction to double
the mass resolving power (FT-ICR and orbitrap), and frequency-multiple
detection for enhancement of FT-ICR mass resolving power by factors
of 2–4. Conversely, for a given mass resolving power, data acquisition
can be speeded up to achieve LC-MS without compromising chromato-
graphic resolution. Instrumentation improvements in ion injection, ion
trapping (dynamically harmonized ICR cell; “nadel” ICR cell, Cassini
quadrupolar cell), excitation, and detection continue to be guided by ion
trajectory simulations.
Multifaceted applications have been enabled by coupling FT mass ana-
lyzers with gas- and liquid-chromatography (collected fractions or on-line),
trapped ion mobility source, various ionization methods (e.g., electron
impact, laser desorption/ionization, MALDI, electrospray, photoioniza-
tion), various ion fragmentation methods (ion-neutral collisions, IR and
UV photodissociation, electron capture, electron transfer, surface-induced
dissociation). FTMS has had particularly high impact in proteomics
(MS/MS identification of protein amino acid sequences, including post-
translational (chemical) modifications not accessible from corresponding
DNA base sequences, and petroleomics (prediction of the properties and
behavior of petroleum and its products based on detailed organic composi-
tional analysis), and is expanding into various other “-omics” fields (food,
geochemistry, environment, forensics, carbohydrates, lipids, metabolism,
etc.) and in molecular imaging in biochemistry and medicine.
The chapters summarize the actual state of the art in the field as for exam-
ple two-dimensional FT-ICR MS/MS, which yields a single 2D spectrum
xvii
xviii Foreword
that connects each precursor ion with all of its product ions. Other chapters
describe gas-phase ion-molecule chemistry and low-temperature inorganic
clusters.
In summary, FTMS instruments now extend to virtually the full range of
mass analysis applications, thereby setting new “gold standards” which serve
to guide subsequence “targeted” analysis with lower-resolution instruments.
Alan G. Marshall
Robert O. Lawton Professor of Chemistry & Biochemistry
Founding Director and Chief Scientist,
Ion Cyclotron Resonance Program,
National High
Magnetic Field Laboratory
Florida State University
Tallahassee, FL, United States
Preface
xix
xx Preface
investigations of several inorganic metal cluster ions and also show the
advantage of cold ICR cell relative to traditional ambient temperature oper-
ation mode. The last three chapters, shows deep FT-ICR-MS investigations
in glycomics, foodomics and bio-oil analysis. With comprehensive treat-
ments of these divers topics of FTMS applications, the reader will get thor-
ough up to date knowledge (some of which are very practical), which can
help the reader to further run and overcome some scientific challenges while
running further FTMS applications. Despite the complex physical and
mathematical fundamentals of the FTMS mass analyzers, every effort has
been done from the editorial side to make every chapter as clear as possible
and therefore accessible to a large audience of scientific readers. We hope
that the reader will enjoy also reading these very interesting chapters.
The editors
Acknowledgments
The editors thank all book chapter contributors for their great efforts and
time spent to add up to date scientific knowledge from their great hands-
on expertise. We enjoyed cooperating together with many authors, who
provided excellent reviews and many explanations to our scientific queries
to make this book as clear as possible.
Basem Kanawati greatly thanks professor Karl Pater Wanczek for his
valuable comments and assistance, while preparing this book. He is the first
scientist, who introduced me in the past to advanced ICR-MS techniques,
with its diverse fundamental physical and chemical elements, ranging from
experimental physics studies and ion trajectory simulations in several ICR
cell designs to applications of this technique in studying many gas phase
ion-molecule reactions and ion energetics.
The editors also thank all Elsevier’s team members for witnessing and
greatly assisting the development of this extensive book. With their help,
we could all contribute to make the production of this comprehensive book
a reality.
xxiii
CHAPTER 1
Contents
Introduction 4
Developments before 1970 5
1965 5
1966 6
1967 6
1968 7
1969 7
Developments from 1970 to 1980 7
1970 7
1971 8
1972 9
1973 9
1974 10
1975 11
1976 11
1977 12
1978 12
1979 12
1980 12
Developments from 1981 to 1990 13
Developments from 1991 to 2000 15
Developments from 2001 17
Conclusion 22
References 23
Fundamentals and Applications of Fourier Transform Mass Spectrometry © 2019 Elsevier Inc.
https://doi.org/10.1016/B978-0-12-814013-0.00001-6 All rights reserved.
4 Fundamentals and Applications of Fourier Transform Mass Spectrometry
Introduction
This review covers instrumentation and theory as well as applications, which
open new fields in scientific research. Therefore, the first decades will
occupy more space than the more recent years. The material is presented
in a chronological sequence of events to facilitate a historical point of view
through the discussion. The review is not intended to be comprehensive,
but a personal view of the authors of the most important developments
in the field.
Four different ion traps are known:
– Penning trap [1–3] (ion trapping by DC electrical fields and a homoge-
neous magnetic field), “ICR cells”
– Paul trap [4, 5] (ion trapping by RF electrical fields),
– Kingdon trap [6] (ion trapping by DC fields) and
– Combined trap [7] (a combination of the Paul and Penning trapping
principles).
Penning traps are covered as far as they are employed in ion cyclotron res-
onance (ICR) mass spectrometry and Fourier transform ion cyclotron—FT
ICR—mass spectrometry. Also covered are ICR drift cells employed in the
early times of the ICR technique. In the ICR drift cell ions drift on cycloidal
paths along the longitudinal axis, guided by magnetic and electric fields (see
text below).
In physics, precision measurements of atomic masses and fundamental
constants are performed with Penning traps. With ICR, elementary steps
of chemical reactions and ion-molecule reactions, which normally occur
at near-thermal energies, are studied. After the invention of the Fourier
transform technique, analytical applications dominate. The ICR method
developed independently from the physical applications until early 1980s
(cf. Ref. [8]: In this ICR volume, for the first time, physical applications
of Penning traps are described by G. Gr€aff from the Institute of Physics,
University of Mainz, in the chapter: “precision determination of cyclotron
frequencies of free electrons and ions,” pp. 318–325).
Several publications of general interest in ICR have been published. The
first book was written by Lehman and Bursey [9] in 1976. The book by
Marshall and Verdun [10] presents a detailed general introduction. Early
reviews in 1971 by Gray [11], by Beauchamp [12], by Futrell [13] and in
1973 by Hartmann et al. [14] covered the new methodology comprehen-
sively. Several reviews [15–18] of early ICR development were published,
and more recently [19, 20] Hartmann and Wanczek [8, 21] edited two
Historical developments in FT ICR mass spectrometry 5
1965
Llewellyn [34] of Varian Ass. filed a patent of an ICR spectrometer with drift
ICR cell and ion resonance detection with the aid of a marginal oscillator
(Pound box [35, 36]):
“A spectrometer is described which employs ion cyclotron resonance and energy
absorption in mass analysis. In an evacuated envelope ions are formed in the first
of two regions which are subjected to static magnetic and electric fields disposed at
right angles to each other and to the common axis of the two regions. The ions are
caused by the interaction of the fields to move with cycloidal motion into the
6 Fundamentals and Applications of Fourier Transform Mass Spectrometry
Furthermore, this ICR cell had a third region for total ion current measure-
ment. The spectrometer was produced and named “Syrotron.” The instru-
ment had a small mass range, below m/z ¼ 200 and a resolution of
m/Δm 1000. Because the early marginal oscillators operated at constant
frequency, the magnetic field had to be scanned for a mass spectrum. The
scan was slow. However, the instrument allowed to investigate ion-
molecule reactions, ion chemical reaction mechanisms at low pressure under
single collision conditions at (near)-thermal energies. The new technique
was easy to operate. As a consequence of this great development, a new field
of chemistry was opened. The first prototype instrument went to the
Baldeschwieler group at Stanford University, a chemistry group. Many
fundamental publications followed by this group, by former members of
the group who went to other places, and by “newcomers.” Most of these
publications opened new research fields for the first time.
1966
The Baldeschwieler group published a report on ion cyclotron double res-
onance for the study of the mechanisms of ion-molecule reactions with the
aid of kinetic energy dependence [37]. Ions are resonantly irradiated to
increase their kinetic energy. The mechanism of the ion-molecule reactions
of a mixture of CD4 and N2 was investigated. After electron impact ioniza-
tion, the mixture contained a small proportion of ions. Therefore, in the
ICR cell, all ion-molecule reactions are of pseudo-first order.
1967
A theory of collision-broadened ICR spectra was developed by Beauchamp
[38]. The Baldeschwieler [39] group published a detailed investigation of a
complicated ion chemical reaction system, generated from chloroethylene.
The enormous potential of the ICR method was shown for the first time.
Dunbar [40] studied the energy dependence of ion-molecule reactions.
A description of the instrument was given by Baldeschwieler et al. [41].
The authors stated: “the characteristics used in the observation and measure-
ment of ion molecule reactions are then:
1. The ion lifetimes extend to 100 ms.
2. The path lengths of the ions extend to 100 m.
Historical developments in FT ICR mass spectrometry 7
1968
New groups appeared. They all employ more or less laboratory-rebuilt, Syr-
otron ICR spectrometers. Bowers and Elleman from JET Propulsion Lab-
oratory and Beauchamp, now at California Institute of Technology, studied
the ion-molecule reactions of olefins [42]. Brauman and Blair [43], at Stan-
ford University, directly measured gas-phase acidities with proton transfer
reactions and double resonance experiments. Henis and coworkers from
Monsanto Company investigated the ion chemistry of methanol [44], and
described a detection scheme with electron energy modulation [45]. Kaplan
[46], later at the University of Cincinnati, identified collision-induced frag-
mentation with ion cyclotron double resonance ICDR. King and Elleman
[47] from Jet Propulsion Laboratory studied ion-molecule reactions of
hexafluoroethane.
1969
Clow and Futrell [48] from the University of Utah, observed charge
exchange by ICDR. Huntress and Beauchamp [49] adapted the ICR tech-
nique for Penning ionization. Benzene ionization by metastable N2 was
investigated. Isotopic exchange reactions of CH4-D2 and CD4-H2 mixtures
and the mechanism of self-induced labeling of methane by Tritium were
investigated by Inoue and Wexler [50] of Argonne National Laboratory.
O’Malley and Jennings [51] investigated the ion chemistry of acetylene. Jen-
nings and coworkers at the University of Sheffield, England were the first
research group outside the United States. The publications refs. [49] and
[51] appeared in the just established new “Journal of Mass Spectrometry
and Ion Physics.”
1970
McIver [52] introduced the trapped ion analyzer ICR cell. Contrary to the
ICR drift cell, this cell has only a single region. The cell has trapping plates
Another random document with
no related content on Scribd:
This eBook is for the use of anyone anywhere in the United
States and most other parts of the world at no cost and with
almost no restrictions whatsoever. You may copy it, give it away
or re-use it under the terms of the Project Gutenberg License
included with this eBook or online at www.gutenberg.org. If you
are not located in the United States, you will have to check the
laws of the country where you are located before using this
eBook.
• You pay a royalty fee of 20% of the gross profits you derive from
the use of Project Gutenberg™ works calculated using the
method you already use to calculate your applicable taxes. The
fee is owed to the owner of the Project Gutenberg™ trademark,
but he has agreed to donate royalties under this paragraph to
the Project Gutenberg Literary Archive Foundation. Royalty
payments must be paid within 60 days following each date on
which you prepare (or are legally required to prepare) your
periodic tax returns. Royalty payments should be clearly marked
as such and sent to the Project Gutenberg Literary Archive
Foundation at the address specified in Section 4, “Information
about donations to the Project Gutenberg Literary Archive
Foundation.”
• You comply with all other terms of this agreement for free
distribution of Project Gutenberg™ works.
1.F.
1.F.4. Except for the limited right of replacement or refund set forth in
paragraph 1.F.3, this work is provided to you ‘AS-IS’, WITH NO
OTHER WARRANTIES OF ANY KIND, EXPRESS OR IMPLIED,
INCLUDING BUT NOT LIMITED TO WARRANTIES OF
MERCHANTABILITY OR FITNESS FOR ANY PURPOSE.
Please check the Project Gutenberg web pages for current donation
methods and addresses. Donations are accepted in a number of
other ways including checks, online payments and credit card
donations. To donate, please visit: www.gutenberg.org/donate.
Most people start at our website which has the main PG search
facility: www.gutenberg.org.