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PGPR AMELIORATION IN
SUSTAINABLE AGRICULTURE
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PGPR AMELIORATION IN
SUSTAINABLE AGRICULTURE
Food Security and Environmental
Management
Edited by
AJAY KUMAR
PAWAN KUMAR SINGH
Woodhead Publishing is an imprint of Elsevier
The Officers’ Mess Business Centre, Royston Road, Duxford, CB22 4QH, United Kingdom
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No part of this publication may be reproduced or transmitted in any form or by any means,
electronic or mechanical, including photocopying, recording, or any information storage and retrieval
system, without permission in writing from the publisher. Details on how to seek permission, further
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as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our
website: www.elsevier.com/permissions.
This book and the individual contributions contained in it are protected under copyright by the
Publisher (other than as may be noted herein).
Notices
Knowledge and best practice in this field are constantly changing. As new research and experience
broaden our understanding, changes in research methods, professional practices, or medical treatment
may become necessary.
Practitioners and researchers must always rely on their own experience and knowledge in evaluating
and using any information, methods, compounds, or experiments described herein. In using such
information or methods they should be mindful of their own safety and the safety of others, including
parties for whom they have a professional responsibility.
To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume
any liability for any injury and/or damage to persons or property as a matter of products liability,
negligence or otherwise, or from any use or operation of any methods, products, instructions, or ideas
contained in the material herein.
List of Contributors xi
Biography xv
1.1 Introduction 1
1.2 Microbial Diversity Analysis 2
1.3 Plant Growth Promoting Rhizobacteria 3
1.4 Spatio-Temporal Changes and Factor Affecting PGPR Diversity 5
1.5 Phosphate Solubilization 6
1.6 Siderophore Production 7
1.7 Nutrient Exchange 8
1.8 Microorganisms in Agriculture 8
1.9 Future Perspective 10
1.10 Conclusions 10
References 11
2.1 Introduction 17
2.2 Cataloguing the Plant-Microbe Interaction 19
2.3 Factors Governing Plant-Microbe Interactions 24
2.4 Applications of Plant-Microbe Interactions 32
2.5 Conclusion and Future Perspectives 33
References 34
Further Reading 39
v
vi Contents
4.1 Introduction 67
4.2 PGPR as BCAs and their Mode of Actions 68
4.3 Proteomic Perspective on Biocontrol 75
4.4 Conclusion and Future Perspective 76
References 79
Further Reading 83
Index 253
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LIST OF CONTRIBUTORS
Deepti Barnawal
Department of Environmental Science, School of Environmental Sciences, Babasaheb
Bhimrao Ambedkar University (A Central University), Lucknow, Uttar Pradesh, India
Nidhi Bharti
Department of Botany, Savitribai Phule Pune University, Pune, Uttar Pradesh, India
Manoj Chaudhary
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Krishna Kumar Choudhary
Department of Plant Sciences, School of Basic and Applied Sciences, Central University
of Punjab, Bathinda, Punjab, India
Mukesh Choudhary
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Matthew T. Elmore
Department of Plant Biology, Rutgers University, New Brunswick, NJ, United States
Akanksha Gupta
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Lokesh Kumar Jat
Department of Soil Science and Agricultural Chemistry, Agricultural Research Station,
Alwar, S.K.N. Agriculture University, Jobner, Rajasthan, India
Pooja Kannojia
National Centre of Organic Farming, Ministry of Agriculture and Farmers Welfare,
Hapur Road, Ghaziabad, Uttar Pradesh, India
Manoj Kaushal
International Institute of Tropical Agriculture, Ibadan, Nigeria
Jitendra Keshri
Department of Food Quality & Safety, Institute for Postharvest and Food Sciences,
The Volcani Center, ARO, Rishon LeZion, Israel
Kathryn L. Kingsley
Department of Plant Biology, Rutgers University, New Brunswick, NJ, United States
Kurt P. Kowalski
U.S. Geological Survey, Great Lakes Science Center, Ann Arbor, MI, United States
xi
xii List of Contributors
Anupam Kujur
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Ajay Kumar
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Akshay Kumar
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Virendra Kumar Mishra
Institute of Environment and Sustainable Development, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Kapil Deo Pandey
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Bhanu Prakash
Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Mahendra Prasad
Crop Production Division, ICAR-Indian Grassland and Fodder Research Institute, Jhansi,
Uttar Pradesh, India
Awadhesh Kumar Shukla
Department of Botany, K S Saket PG College Ayodhya, Faizabad-224123 affiliated
to Dr. Ram Manohar Lohia Avadh University, Faizabad, Uttar Pradesh, India
Amit Kishore Singh
Botany Department, Kamla Nehru Post Graduate College, Raebareli, Uttar Pradesh,
India
Divya Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Gurudatta Singh
Institute of Environment and Sustainable Development, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
Monika Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
P.K. Singh
Center of Advanced Study in Botany, Institute of Science, Banaras Hindu University,
Varanasi, Uttar Pradesh, India
List of Contributors xiii
xv
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CHAPTER ONE
1.1 INTRODUCTION
Currently the chemical fertilizers are used by farmers to supplement
the essential nutrients to the soil associated plant system widely. The ease
of availability and the environmental concerns of chemical fertilizers in
special relation to the N fertilizers are real issues of today’s agriculture.
However, the use of chemical fertilizers has its own merits and demerits
in agriculture land application and sustainable crop yields. Hence, there is
an urgent requirement to alternative strategies in order to enhance the
crop production and maintain the nutrient in the soil for ecological bal-
ance in agro-ecosystem. In the present scenario, the use of microbial
inoculants or plant growth promoting rhizobacteria (PGPR) is promising
and widely accepted practices in intensive agriculture for the sustainable
agricultural production. PGPR are free-living soil bacteria that colonize
root rhizosphere/of plant and promote the growth in terms of crop yields
(Kumar et al., 2014a,b).
Earlier researcher has investigated that the rhizosphere is more diverse
for bacteria than the surrounding bulk soil. These rhizospheric microbes
derive benefit from the plant roots because it secretes metabolites that can
be utilized as nutrients. It is reported that the bacterial population in the
rhizosphere is found 101000 times higher than bulk soil (Lugtenberg
and Kamilova, 2009). To exert their beneficial effects in the root environ-
ment, bacteria should have to be rhizosphere competent, that is, able to
compete well with other rhizospheric microbes for nutrients secreted by
the roots. The discriminative use of food source by the microbes in root
zone is not still well understood (Uren, 2007). An exception is the com-
position of the root exudates of tomato, in which organic acids, followed
by sugars, are the major components (Lugtenberg et al., 2001). Study was
carried out by the earlier researcher and they have confirmed the role of
organic acids in root colonization and found that the mutants affected in
organic acid utilization are poor competitive in root colonization compare
to the parental strain (De Weert et al., 2007). It is reported that only a
small part of the root surface is covered by bacteria, while, there is better
chance of bacterial growth between epidermal cells and areas where side
roots appear. This chapter highlights the diversity of PGPR and their
potential exploitation in agricultural landscape in order to enhance the
sustainable crop production.