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Digital Transformation of the Laboratory
Digital Transformation of the Laboratory
Edited by
Klemen Zupancic
Tea Pavlek
Jana Erjavec
The Editors All books published by WILEY-VCH
are carefully produced. Nevertheless,
Klemen Zupancic authors, editors, and publisher do not
SciNote LLC warrant the information contained in
3000 Parmenter St. these books, including this book, to
53562 Middleton WI be free of errors. Readers are advised
United States to keep in mind that statements, data,
illustrations, procedural details or other
Tea Pavlek items may inadvertently be inaccurate.
SciNote LLC
3000 Parmenter St. Library of Congress Card No.:
53562 Middleton WI applied for
United States
British Library Cataloguing-in-Publication
Jana Erjavec Data
BioSistemika LLC A catalogue record for this book is
Koprska ulica 98 available from the British Library.
1000 Ljubljana
Slovenia Bibliographic information published by
the Deutsche Nationalbibliothek
Cover Image: Tea Pavlek The Deutsche Nationalbibliothek lists
this publication in the Deutsche
Nationalbibliografie; detailed
bibliographic data are available on the
Internet at <http://dnb.d-nb.de>.
10 9 8 7 6 5 4 3 2 1
v
Contents
Preface xvii
Part I Inspiration 1
2.12.1 API 66
2.12.2 Middleware 67
2.12.3 Authentication and Authorization 67
2.12.4 Internet of Things 67
2.13 Data-flow Modeling for Laboratories 67
2.14 Software Licensing 70
2.14.1 Proprietary Software Licenses 70
2.14.2 Open Source 70
References 72
18 Wet Lab Goes Virtual: In Silico Tools, ELNs, and Big Data Help
Scientists Generate and Analyze Wet-lab Data 253
Jungjoon Lee and Yoonjoo Choi
18.1 CRISPR-Cas9 Explained 254
18.2 Introduction of the Digital Solutions and ELN into the Laboratory 255
18.3 The Role of the ELN and In Silico Tools in the Genome-editing
Process 255
18.3.1 Designing sgRNA 255
18.3.2 Issues with Paper-based Processes and the Use of ELN 256
18.3.3 High-content Imaging for the Target Discovery 256
18.3.4 Plant Virtual Laboratory 257
18.4 The Role of the ELN and In Silico Tools in the Protein Design
Process 258
18.4.1 Protein Modeling 258
18.4.2 Protein Redesign 259
18.4.3 Importance of Keeping the Electronic Records 260
18.4.4 Development of Therapeutic Antibodies 260
18.4.5 Importance of Electronic Lab Notebook for Communication Between
Team Members 262
References 263
Index 329
xvii
Preface
Inspiration
We start this book with an inspiring overview of lab evolution, new technologies,
and new science being done. It will give you a complete overview of the subject of
xviii Preface
laboratories of the future and, hopefully, add to the vision of your own career in
science and technology.
Knowledge Base
Knowledge Base section focuses on crucial terms to understand. It will give you a
solid basis of knowledge that you will be able to apply further on as your lab grows
and evolves.
Practical
The Practical chapters give you examples and guidance on defining your lab’s digi-
talization strategy.
Case Studies
We present different case studies and expert comments on the subject of going from
paper to digital. You will be able to read how different laboratories and profession-
als approached the subject and put it into practice, and what are their conclusions,
advice, and lessons learned.
Continuous Improvement
We have a closer look at the steps that follow after the digitalization.
As you read this book, you will gain holistic knowledge on digital transformation
of the laboratory. Tracking, analyzing, and leveraging the value of data you are col-
lecting, by implementing tools that can empower the people in your lab, are the main
points of this journey.
Using the knowledge, you will be able to start defining what exactly you want to
achieve. Once you clarify your main goals, you will be able to go all the way back
through the processes in your lab and see which need to be digitalized.
Preface xix
Part I
Inspiration
We start this book with an inspiring overview of lab evolution, new technologies,
and new science being done. It will give you a complete overview of the subject of
laboratories of the future and, hopefully, add to the vision and purpose of your own
career in science and technology.
3
1.1 Introduction
Steve Jobs once said that “the biggest innovations of the 21st century will be at the
intersection of biology and technology”; in this (r)evolution, the lab will most defi-
nitely play a key role.
When speculating on the future digital transformation of the life sciences R&D,
one must consider how the whole lab environment and the science that goes on in
that lab will inevitably evolve and change [1, 2]. It is unlikely that an R&D lab in
2030, and certainly in 2040, will look and feel like a comparable lab from 2020. So,
what are the likely new big technologies and processes and ways of working that
will make that lab of the future (LotF) so different? This section endeavors to intro-
duce some of the new developments in technology and in science that we think will
change and influence the life science lab environment over the upcoming decade.
1.2 Discussion
Before going into the new technology and science in detail, it is important to rec-
ognize that this lab evolution will be driven not just by new technologies and new
science. In our view, there are four additional broader, yet fundamental and comple-
mentary attributes that influence how a lab environment changes over time. They
are:
1. People and culture considerations
2. Process developments and optimization
3. Data management improvements
4. Lab environment and design
When we add the fifth major driver of change – new technology (including new
science) – it becomes clear that digital transformation is a complex, multivariate
concept (Figure 1.1).
Digital Transformation of the Laboratory: A Practical Guide to the Connected Lab, First Edition.
Edited by Klemen Zupancic, Tea Pavlek and Jana Erjavec.
© 2021 WILEY-VCH GmbH. Published 2021 by WILEY-VCH GmbH.
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