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Page a Technical Report of the Students (1)
Page a Technical Report of the Students (1)
Page a Technical Report of the Students (1)
Undertaken at:
BY:
Submitted to:
FACULTY OF BIOSCIENCES.
-
(APRIL SEPTEMBER, 2013)
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DEDICATION
This technical report is dedicated to God, the greatest scientist ( the omniscience) and
the Blessed Virgin Mary, mother of God, the first to behold God’s experiment.
AND
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ACKNOWLEDGEMENT
My profound gratitude goes first to God almighty, the author and finisher of my life, for His
guidance and protection throughout my training days in Ibadan; to Mary, my mother and
queen, for Her maternal assistance during my ‘rainy days’ throughout my training days. May
you be forever be glorified in my life and academic endeavours.
I wish to also thank the SIWES directors and co-ordinators and all those who saw to the
organisation of this program. Thank you all for this wonderful opportunity.
My gratitude also goes to my benefactor and 2nd god in Ibadan, Dr. Ifeanyi A. Orjiakor,
whom God used to protect and provide for me during my arrival in Ibadan and in my hazy
moments. Indeed, nwanne di na mba.
To my erudite scientist, the man whom I owe all these knowledge to, without whom my stay
and even my training in the institute wouldn’t have been possible; Dr. Stefan, Hauser, a
senior scientist and a Root and Tuber systems Agronomist of high repute for his fatherly care
and nuture and for giving me leave to appreciate the IITA environment and make something
meaningful out of my stay in it and also for always giving me a listening ear each time
without whinges. Dr. Stefan, I say a big THANK YOU. And to the host of my supervisors in
the Agronomy unit;.Messrs. Adeboye Dada Johnson, Felix Friday, Joseph Olukunle, Kehinde
Oyekanmi and Samuel Nsakpe and research fellows Enesi Rebecca and Benjamin Adetola, I
say thank you for all your coaching and for haven given me the unmerited privilege to learn
from you all throughout my stay with you. Indeed I would say I really enjoyed every bit of
my stay with you all.
My gratitude also goes to the research supervisor, IITA Entomology unit, Mrs. Aderanti,
Rachael, and the host of the other IITA Entomology unit staff for their care and tutelage
during my short stay with them. Mommy, I really appreciate your help and pray the good
Lord to bless you.
My unalloyed gratitude also goes to the Nematology ‘madam’, Mrs. Adewuyi Omowumi for
her unalloyed care, tutelage, supervision and help she showed me during my stay with her. I
pray the good Lord to also bless you for your kind heart and generosity. And to all
Nematology unit staff who contributed in one way or the other to the success of my training
in the unit both the research fellows, I say a very big THANK YOU to you all.
My gratitude also goes to my benefactor, Dr. Duru, G.O.C, whom I would never forget in all
my academic endeavours for his unalloyed support throughout my university education.
Charity they say begins at home. To this I wish to acknowledge my family for haven been the
pillar of support for me throughout my 6 months industrial training days. To my father, Sir
Duru U.F, I say thanks Sir, to my ever-caring mother and my adviser in times of adversity,
Duru, S.N, I say Daalu ezigbo nne m oma, to my brothers Chiegboka and Chinazo, I say
thanks bro and to my ‘Margaret thatcher’ sister, I say may God bless you for me.
Lastly, my gratitude goes to my friends on whom I fall back to for assistance when am
morally down; Chukwuebuka Anuebunwa, for providing me with a conducive shelter; thanks
bro na baba God go reward you sha; to Nnachor Emmanuel (chuks), Ekeoma chidi,
Nnaedozie Okoli, Owie Nosah, Abisona Michael and to Nwazuruoke Jude (my choir co-
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ordinator, st. Cecilia students’ choir, Seat of Wisdom Catholic church, University of Ibadan)
my pale pale I say thank you for helping me in touring IB city and in achieving something
spiritually during my stay in Ibadan. Once more, thanks pals.
To all whom I may have skipped tp acknowledge here, do know that you are always in my
mind and my lips during prayers and I wish to say a big THANK YOU to you all.
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CERTIFICATE OF SIWES TRAINING
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SUMMARY OF WORK
This report, a four chaptered report, is aimed at explaining key areas of my training under the
Student Industrial Work Experience Scheme undertaken at The INTERNATIONAL
INSTITUTE OF TROPICAL AGRICULTURE (IITA), Ibadan, headquarters. It gives a brief
introduction about IITA, an African-based, international research for development
organization established with the aim of fostering agriculture, enhancing crop productivity
and quality, reducing producer and consumer risk and generating wealth from agriculture
through her research works.
This report also covers a detailed description of all the activities that were carried out during
the period of the training and encapsulates each in a separate chapter.
In one of the chapters, the Entomology unit, a detailed explanation of all the work undertaken
at the unit during the training was given ranging from the laboratory diet preparation of
different diet for different crop pests, their rearing in the adult rearing rooms/cages to the
infestation of different agricultural plant cultivars with these pests either for screening
purposes or for further research works.
The report on Agronomy unit expanciated the various agronomic research trial works that
were on-going as at the time of the training ranging from the nutrient omission trial
experiments on root (cassava) and tuber (yam) crops, density trial experiments too with
cassava and yam and the incorporation of maize intercropping into the research to the
cultural practices in soil fertility management.
The last chapter of the report which was on the Nematology unit expanciated the day-to-day
activities and the different works done in the unit during the training days ranging from the
nematode sampling, different extraction techniques for the nematode extraction, nematode
identification and counting, nematode fishing and culturing for further research purposes to
soil sterilization for nematode multiplication experiment.
The work and activities enlisted in this master-piece was actually carried out by me and with
my supervisors’ scrutiny and directives.
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TABLE OF CONTENTS
Page
Cover page i
Dedication ii
Acknowledgement iii
Certificate of training v
Summary of work vi
Table of content vii
CHAPTER 1 INTRODUCTION
1.1 SIWES background and objectives 1
1.1.1 SIWES background 1
1.1.2 SIWES objectives 1
1.2 Background of the establishment attached 2
1.2.1 IITA’s location and organization 2
1.3 List of some laboratory equipment used during the training and their usage 4
CHAPTER 2 ENTOMOLOGY UNIT
2.1 Introduction 9
2.2 Preparation of various diet compositions for insect rearing in the stem-borer
laboratory for different stem-borers. 10
2.2.1 Composition and preparation of diet ingredients for the rearing of Eldana
saccharina. 10
2.2.1.1 Lifecycle of Eldana saccharina. 10
2.2.1.2 Laboratory rearing of Eldana saccharina. 10
2.2.1.3 Composition of diet ingredients and preparation procedures for the laboratory
rearing of Eldana saccharina. 12
2.2.1.3.1 Procedure for preparing the diet for Eldana saccharina. 12
2.2.2 Composition and preparation of diet ingredients for the rearing of Sesamia
calamistis. 14
2.2.2.1 Lifecycle of Sesamia calamistis. 14
2.2.2.2 Laboratory rearing of Sesamia calamistis. 15
2.2.2.3 Composition of diet ingredients and preparation procedures for the rearing of
Sesamia calamistis in the laboratory. 16
2.2.3 Composition and preparation of diet ingredients for the rearing of Maruca
vitrata. 16
2.2.3.1 Lifecycle of Maruca vitrata. 16
2.2.3.2 Laboratory rearing of Maruca vitrata. 17
2.2.3.3 composition of diet ingredients and preparation procedure for the laboratory
rearing of Maruca vitrata. 17
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2.2.3.3.1 Procedure for preparing the diet for the laboratory rearing of Maruca
vitrata.18
2.2.3.4 Preparation of an alternative diet for the laboratory rearing of Maruca
vitrata.18
2.3 Field infestation of various cultivars with insect pests larvae. 19
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CHAPTER 4 NEMATOLOGY UNIT
4.1 Introduction 41
4.2 Nematode sampling 42
4.2.1 Soil sample collection for nematode sampling 42
4.2.2 root sample collection for nematode sampling 44
4.3 nematode extraction 45
4.3.1 pie-pan/extraction tray method 46
4.3.1.1 extraction tray method for soil samples 46
4.3.1.2 extraction tray method for root samples 46
4.3.2 sieving method 47
4.3.2.1 sieving method for soil sample extraction of nematodes 48
4.3.2.2 sieving method for extracting sedentary cyst nematodes 48
4.3.3 maceration (blending) method 49
4.3.4 sodium hypochlorite method (hussy and barker technique) 50
4.4 nematode identification and counting 51
4.5 nematode fishing 53
4.6 nematode culturing 54
4.7 soil sterilization 55
PROBLEMS ENCOUNTERED AND OPINED SOLUTION 56
REFERENCES 58
APPENDIX 60
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CHAPTER 1.
INTRODUCTION
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The specific objectives of the scheme (SIWES) as outlined in the Industrial Training Funds
policy document no.1 of 1973 are as follows:
To provide placements in industries for students of higher institutions of learning
approved by relevant authorities (NUC, NBTE, NCCE) to acquire experience and
skills relevant to their course of study.
Prepare students for the real work situation they will meet after graduation.
Expose students to work methods and technics in the handling of equipment and
machinery that may not be available in school.
Make transition from school to the labor market smooth and enhance student
contact for later job placement.
Provide students with the opportunity to apply their knowledge in real life work
situation thereby bridging the gap between theory and practice.
Strengthen employer involvement in the entire educational process and prepare
students for employment in industry.
Promote the desired technological know-how required for the advancement of the
nation. (Agwuna, 2012)
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For efficacy and specialization, the institute is divided into several units, each headed by an
erudite scientist who oversees the affairs of what goes on in the unit. There are several units
based on the major research crops undertaken by the the institute viz: Cassava Breeding Unit,
Yam Breeding Unit, Banana/Plantain Breeding Unit, Cowpea Unit, Maize Breeding Unit,
Soybean Breeding Unit; others include those based on crop protection and improvement:
Pathology Unit, Virology Unit, Entomology Unit, Nematology/Striga Unit, Soil
Microbiology Unit etc. Others include Agronomy Unit, Reseach Farm Unit, Crop
Transformation/Utilization Unit, Genetic Resources Center, Communication/Publishing Unit,
Bio-sciences Unit, Analytical Services Unit etc.
Also, there are other autonomous research centres within the institute such as The AfricaRice
Centre, The International Centre for Insect Physiology and Ecology (ICIPE), HarvestPlus,
International Livestock Research Institute (ILRI) which are situated within the institute and
form part of the institute’s research partners in achieving their vision- becoming Africa’s
leading research partner in finding solutions for hunger and poverty.
1. Compound microscope:
used for viewing micro organisms that cannot be seen with the naked
eyes.
2. Stereo microscope:
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they are used for culturing nematodes and for holding fished
nematodes or their eggs.
6. Kester cylinder:
used for arranging same media into the incubator and also for
arranging equipment to be sterilized into the autoclave for
sterilization.
7. Incubator:
9. Carmel-hair brush:
Used for picking and infesting plants with larvae of insect pests.
10. Diet plates:
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Used for preparing insect diets for their laboratory rearing.
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For measuring accurately the volume of the laboratory
solution/water intended to be used.
16. Beakers:
Used for holding liquid extracts and also for measuring out a
particular sample volume.
17. Electric blender:
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Used for nematode extraction.
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CHAPTER 2
ENTOMOLOGY UNIT
2.1 INTRODUCTION
The crop protection and improvement division is one of the major research areas where IITA
helps in bettering the lives of Africans. The entomology unit, which is one of the units under
the division, takes care of the insect pests of the different crops undertaken by the institute.
The unit services the institute in areas pertaining to insect pests of the major research crops
undertaken by the institute and carry out researches on how their infestation can be reduced
to an insignificant percentage. The unit also serves other units by providing them with certain
insect pests which they ( the Entomology unit) rear in their insectaria up to the number
required by the unit demanding the pests for their own researches. They also help other
people from outside the institute who may have need of running a research in the institute
under their unit.
During my stay in the institute, I was opportuned to visit and work in this unit, and I really
had nice experience during my stay there as a trainee. There, I was opportune to witness
some of their research works and took part in most of them. I was also able to see some of
the things I was taught in school and was able to adapt to the practical aspect at the institute
without much stress.
Also during my stay there, we were much involved in rearing various insects for further
research works. I was much interested in rearing insect pests of maize, cassava and yam as
these were the major crops my scientist, Dr. Stefan, Hauser, was experimenting on as at the
time of my training in the institute. We were much involved in the pests of maize as we were
also trying to screen some maize varieties for their resistivity or susceptibility to some maize
stem-borers (a PhD research work work of a research-fellow).
Though there were many maize stem borers, our interest was focused on three major insect
pests whose destruction has been on the high side in some African maize-producing
countries: Eldana saccharina, Sesamia calamistis and Maruca vitrata. We, during the course
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of the research and hence too, my training , were able to rear them, culture them in their
different diets prepared for each by us, inoculate them in the diets and finally infest our
maize field with the pests as the research entailed. Some of this work, suffice it to say, was
done by me alone or as part of a group and under my supervisors scrutiny and guidance.
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Adult Egg mass
5-6days
7-14 days
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FIG 2.2 Egg removal from FIG 2.3 oviposition sticks FIG 2.4 Eggs adhered to
The oviposition stick A pinhead inside the diet
FIG 2.5 The infested diets FIG. 2.5 Pupa emerging into adult in the
arranged on the rack inside cage
The infestation room.
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Acetic acid (25%) appendix A 200ml
Formaldehyde (10%) appendix A 16ml
Vitamin suspension 104ml
Materials other than the aforementioned components used for the preparation include:
Two big pots
Two stoves (or any other heat source)
An electric blender
A fork
An electric weighing balance
Ladle
An electric mixer
A measuring cylinder (1000ml)
Diet plates
Microflow laminar work station
Using a 1000ml calibrated measuring cylinder, measure out 7200ml of water and pour into
one of the big pots and place on fire. Measure out another 7200ml of water and pour into the
second pot and also place it on fire. Into the second pot (i.e. pot B), weigh out 150g of Agar
and pour inside, cover the pot and leave it to boil. Into the first pot, measure out all the
components of Fraction A according to their stipulated measurements as stated above and
pour into the pot (i.e. pot A ) also allow it to boil for about 30 minutes. Add pot B contents
into pot A after 30 mins of boiling and put the pot A inside cold water and allow to cool to
60°c. As the mixture is cooling off, quickly weigh out the components of Fraction C and put
in a blender. Pour the already cooled concoction inside the electric mixer but not all the
contents of the pot. Pour the remaining portion of the concoction left behind inside the pot (
mainly the congealed residues at the bottom of the pot) into the blender containing fraction C
components and blend together. Pour the blended mixture into the ones in the electric mixer
and on the machine. Measure out the components of Fraction D and pour one after the other
into the mixer for optimal mixing. After about 5 minutes from the time the last component of
Fraction D was added into the mixer, stop the mixer and bring down the mixing bowl and set
it on the trolley and then move it nearer to the microflow laminar work station where the diet
plates has been washed and arranged in readiness for the diet. Use a 500ml cup to dish out
the diet and pour into each plate (usually 22 plates on the whole). Leave the diet in the plates
on the microflow laminar work station to cool very well and congeal then, use a fork to draw
lines (usually little perforations) in the diet (this line helps in creating holes for the newly
hatched larvae to easily bore into the diet on hatching from the egg) after which, the diet is
ready for infestation with eggs or 2nd instar larvae.
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FIG. 2.7 measuring out of FIG 2.8 pot A & B on fire
Water for the boiling.
FIG.2.13 electric mixer FIG.2.14 dishing of the diet FIG.2.15 The diets awaiting
Mixing the concoctions into the plates on the infestation on the workstation.
Laminar workstation .
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weeks old until flowering. The eggs are hemispherical, about 1.5mm in diameter. They are
somewhat whitish when laid but darken as they develop. About 8 days from the day the eggs
are laid, the larvae, which have variable color but are usually creamy white with a distinctive
pink suffusion a brown head and a yellowish-brown dorsal abdominal segment (usually the
last segment), emerges. There are 6 larval instars and the larval period lasts for about 22
days. The larva (precisely L2) is the destructive stage of the pest. They penetrate the stem
shortly after they emerge which might result in dead hearts or stalk breakage. During the ear
filling period, the majority of the larvae occur in the ears. Most larvae pupate within the stem
or cobs (Akol, A.M et.al). There is only one pupa per stem (E.A Heinrichs). The pupal period
lasts from 10 to 12 days before a new pink stalk-borer emerges and the cycle continues.
The eggs are collected by removing them from the oviposition stick where the female
inserted them and putting them in a tissue paper using forceps. The eggs are further sterilized
in 10% formaldehyde for about 20 minutes and then put in the microflow laminar work
station for 10 minutes before they are infested in their diet in the infestation room.the eggs
are separated into 60 eggs per diet and put inside vials, ready for infestation. The vials are
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placed inside the diet, mouth open and slanty so that the emerging larvae can easily crawl
down and out of it into the diet. The larvae on hatching feeds on the diet. The larvae is being
transferred to new diets as they molt from one stage to another. After the estimated larval
period (22 days), the larvae metamorphose into the non-motile pupa and can be seen attached
to the tissue papers used in covering the diet. At this stage, they are being removed from the
diet and taken to the adult room where there are cages for the adult pest. On emergence, the
adult flies about inside the cage, mates and starts a new cycle.
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8-14 days
Pupa Larva
FIG. 2.17 Life cycle of Maruca vitrata
M. vitrata, like other pests of crops, is being reared in the laboratory for further research
works it would be used to undergo.
Materials needed for the lab. rearing include:
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Wesson salt mix 44.4g
Ascorbic acid 25g
Chloramphenicol/Aureomycin 3.9g
Sugar 60g
Methyl-parahydrobenzoate 3.6g
Sorbic acid 6.8g
Water for blending 2000ml
FRACTION B
KOH (4m) 22ml
Choline chloride (15%) 29.6ml
Acetic acid (25%) 50ml
Formaldehyde (10%) 26ml
Vitamin suspension (appendix A) 30ml
FRACTION C
Water for boiling agar 2000ml
Agar 59.2g
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Pick cowpea (Vigna unguiculata) that is susceptible to Maruca vitrata, about 10 cups. Put in
a bowl and wash very well. After washing, take out all the bad ones that floats on the water
and throw them away. Add 45% sodium hypochloride (NaOCl) i.e. JIK and leave for 10
minutes. This is to sterilize the cowpea. After 10 mins, wash away the NaOCl with clean tap
water twice and then add another clean tap water. Add 2g of any fungicide of your choice
into it. This is to avoid fungal contamination of the diet. Leave for up to 8 hrs and then drain
the water out of the cowpea. Then leave the cowpea inside the bowl to germinate under room
temperature (it takes at least 2 to 3 days under the lab. Room temp.) Once the cowpea has
germinated enough as to contain the number of the pests to be added, infest the medium with
M. vitrata larvae in their 1st instar stage although eggs can also be used for infestation. Place
the medium on a shelf in the Maruca rearing room under a temperature range of 20°-24°c. A
routine check of the media should be observed at least once in a week. During this check, the
tissue paper at the base of the container (upon which the cowpea was placed) should be
changed and the hatched, more matured larvae should be transferred to new media to avoid
over-crowding and competition hence which may result in losses. When the larvae starts
pupating on the tissue papers, take them to the Maruca cage where the adults are kept to
await the emergence of new adults.
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the front and back of the plots served as the front and back boarders respectively hence
leaving only 4 rows and 4 columns (i.e. 16 plants per plot) as the main plants.
The pest, S. calamistis, in its 1st larva instars was used as the inoculants and was inoculated
into the 21-days old maize cultivars. To each maize plant in each block and subsequently in
each plot, 3 larvae inoculants were inoculated in-between the newly sprout leaves of the
maize plant using the infestation brush to pick the larvae. Care was taken to ensure that the
pest’s larvae were rightly inoculated into the hub of the leaves to ensure efficacy in the
experiment.
The maize cultivars were fertilized with urea fertilizer (150g per plot) and watered using
over-head irrigation system.
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FIG 2.20 the maize infested field.
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CHAPTER 3
AGRONOMY UNIT
3.1 INTRODUCTION
Agronomy, according to the Merriam-Webster Unabridged Dictionary, is a branch of
agriculture dealing with field crop production and soil management. It is a science that deals
with the methods used by farmers to raise crops and care for the soil including irrigation and
the use of herbicides, pesticides and fertilizers. IITA being an agriculture-oriented institute
has the Agronomy unit as one of its bedrocks in achieving its speculated goals.
The agronomy unit of the IITA undertakes research works pertaining to the field production
of the mandate crops of the institute (especially roots and tuber crops) and soil management
especially in the agronomic management practices involving the use of fertilizers in boosting
crop yields and land conservation to obtain maximum yield.
During my stay in the unit, I was opportuned to work in the field where various research
works were on-going ranging from the omission trial, density trials to cultural practices in
soil fertility management. During the course of my training in the unit, I took part in various
agronomic operations, experimental evaluations, data collection, etc. I also was able to learn
to use and operate some of the machines used during the course of the research works. These
include the Area meter, the Electric weighing balance, spring balances and nitrogen
extractors amongst others.
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only Zn needed to be added, ZnCl fertilizer was applied to take care of the nutrient. This also
applied to the other ones.
This experiment was sponsored by the International Fertilizer Development Corporation
(IFDC) and it was also aimed at testing their fertilizers which they developed for root and
tuber crops. The experiment was carried out in two different fields BS20 and part of WBIII.
Two crops yam (Dioscorea rotundata) and TME419 cassava (IITA landrace accession) were
used for the experiment and the Randomized Block Design (RBD) experimental design was
used in the course of the experiment for the statistical analyses.
FIELD MEASUREMENT AND PEGGING: The field BS20 was first of all cleared using
a tractor. The field was measured and marked into 4blocks using bamboo pegs. Each block
measured 100m x 80m. Each block was further marked into 16plots each making a total of
64plots (i.e. 16plots x 4blocks = 64plots) in the whole field. A plot, suffice it to say, is
always on the right of the peg (i.e. pegs indicating the plot number is on the left hand side
while the plot numbers is on the right hand). After the measurement, the tape was once again
tensioned at both ends and placed vertically on each block and then, 1m intervals were
pegged at both sides of the plot. The tape was also used to peg an 80cm horizontal gap
interval in the plots using small pegs to indicate the exact place where the cassava stems
would be planted on the plate. There were usually a row and a column of plant (usually the
1st column) set aside in each plot to serve as the boarder plants these plants are not included
in the result analysis during harvesting or any other evaluation. The main cassava stem
planting was usually done after all the markings and pegging has been concluded. There are
49 cassava plants in a plot but 24 out of the 49 serves as the boarder to the 25 main plot
plants.
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3.2.1.2 FERTILIZER APPLICATION
Fertilizer application, the opium of the research work, commenced some weeks after
the main cassava planting was done. The 7 nutrients were applied to each plot in each block
in a randomized manner and one plot was always left out as the control plot in each block.
The fertilizers were prior to the application weighed out into small nylon bags according to
the proportion needed to be applied in each plot. In a plot where Nitrogen (N) for instance
was to be applied, the urea fertilizer was used; in a plot where N, P & K were to be applied,
NPK fertilizer was used, in a plot where Sulphur and potassium should be applied, KSO4
fertilizer was used. However, if the plot required only Sulphur but no potassium, MgSO4 or
ZnSO4 fertilizer was used instead. Also, in a plot where only Zn was needed, ZnCl fertilizer
was applied instead of ZnSO4 to avoid the addition of Sulphur and since chlorine (Cl) is not
among the test-nutrients. Care was taken not to let the fertilizers touch the cassava plants.
The procedure of randomized application was effected through the use of field plans.
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yellow coloration showed the presence of the green mite. In other plants, the leaves were
found to have also died and fallen off as a result of wilting.
During the assessment, some pegs which had been removed or fallen were replaced again.
Also, the main stems of some cassava plants were noticed to have bent sideways and the area
exposed to sunlight had started germinating all over again. All these observations suffice it to
say, were all being noted.
Usually after fertilization, the number of main stems, branches and the height of each cassava
plant were taken.
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The samples that were taken to the oven were kept at a temperature of 65 °c and for 7days
before they were brought out and grounded into powders. Prior to the grinding, the dry
weight of the samples (leaves, stems and roots) for each plot was ascertained.
These tasks and procedures, although they seemed rigorous, were systematically and tactfully
executed with high precision and accuracy as watchwords. The grounded samples would
further be shifted to the Analytical Services Unit of the institute for further laboratory
analyses and research on the samples.
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3.2.2.2 YAM SEEDLING TREATMENT FOR PLANTING
After the field measurements and marking was completed and prior to the yam planting
proper, the seed yams to be planted were treated with insecticides and other chemicals to
prevent pest and disease attacks on the seedlings
Yam tubers were cut into specific sizes and were weighed using a weighing balance (for a
viable yam seedling, the standard weight was between 100g-200g). these yam seedlings were
arranged into different baskets in hundreds. 50 liters of water was poured each into two big
buckets and into them were added 10% insecticide (cypermethrin 10% EC) and a fungicide
(Z-force) of which the active ingredients were cypermethrin and mancozab 80% WP
respectively. (mancozab 80% WP is of the family Ethylene Bisdithiocarbonate EBOC).
300g of Z-force was measured out with a saucer on a weighing balance (as it was in
powdered form) and 100ml of cypermethrin was also measured out using a measuring
cylinder (as it was an emulsifiable solvent). These two chemicals were then mixed in each of
the big buckets. Yam seedlings from each basket were placed inside nets so as to ensure
uniformity in the treatment. The yam seedlings inside the nets were dipped into the solution
and left to stay for 3 minutes. They were further taken to the glasshouse for drying. The
glasshouse allows for maximum sunlight on the yam seedlings. After about 1 week in the
glasshouse, the seedlings were taken to the field for planting.
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germinated. The yam tendrils were staked with bamboos and ropes as soon as they started
trailing on the ground. For efficiency and uniformity, the stakes were done using different
colors of rope. One particular color was used to stake the borders while another color was
used for the main plots. The control had another color of its own too. Vine trailing was also
one of the field assessment exercise carried out in the yam omission trial field.
The work on the yam omission trial experiment, though seemingly tedious, was tactfully
carried out. The harvesting and post harvest experimental works would come later as soon as
the yams were due for harvesting and as soon as the necessary treatments has been duly
carried out on the different blocks.
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The cassava density trial experiment was carried out to check the different planting densities
that would be most efficacious and cost minimizing and the effect of planting cassava and
another crop together at such density on the yield. It also tried to analyze the tillage type on
which the efficacious density was most efficient and the effect of fertilizers on the yield of
the cassava.
The experiment involved systematic processes spanning from the field clearing and
measurement, pegging and plot numbering, border demarcation and cassava planting proper
to fertilizer application, field evaluation and viral infection assessment of the cassava
cultivars, maize planting and harvesting together with the post-harvest processes. Also
worthy of note are the Split-split plot experimental design adopted in the course of the
experiment and the cassava varieties used for the research.
3.3.1.1 CASSAVA VARIETIES USED FOR THE EXPERIMENT
During the course of the cassava density trial experiment, two cassava cultivars gotten from
the Cassava Breeding unit of the institute were used. The two cultivars were TMS 97/2205
and TME419. Some of the noticeable characteristics that differentiate the two varieties are
tabulated as follows:
Table 3.1 differences between the two cassava cultivars. Source: A.G.O Dixon et.al, 2010
Page | 38
3.3.1.2 THE SPLIT PLOT AND SPLIT-SPLIT PLOT EXPERIMENTAL
DESIGNS.
The split plot design is specifically suited for a two-factor experiment that has more
treatments than can be accommodated by a complete block design. In a split plot design, one
of the factors is assigned to the main plot. The assigned factor is called the main-plot factor.
The main plot is divided into sub-plots to which the second factor, called the subplot factor is
assigned. Thus, each main plot becomes a block for the subplot treatments.
With a split-plot design, the precision for the measurement of the effects of the main plot
factor is sacrificed to improve that of the sub-plot factor.
Sometimes in experiments, subjects are assigned at random to a set of treatments. Then those
are subdivided into sub-units to which another set of treatments are applied. And then, those
in turn are subdivided again and a third set of treatments are applied. This type of
experimental design is what is called THE SPLIT-SPLIT PLOT EXPERIMENTAL
DESIGN. It is an experimental design that is uniquely suited for a three-factor experiment
where three different levels of precision are desired for the various effects. Each level of
precision is assigned to the effects associated with each of the three factors. This design is
characterized by two important features (Gomez, K.A et.al, 1984)
• There are 3 plot sizes corresponding to the 3 factors, namely, the largest plot (the
main plot) for the main plot factor, the intermediate plot (sub plot) for the sub plot factor and
the smallest plot (sub-sub plot) for the sub-sub plot factor.
• There are 3 levels of precision, with the main plot factor receiving the highest degree
of precision.
FIELD MARKS:
Main experimental subjects of a RCB are divided further into additional independent
units (sub plots) to which another set of treatments are randomly assigned. These subplots are
additionally split into sub units to assigned randomly to yet another set of treatments.
Main treatments are assigned at random within blocks of adjacent subjects, each
treatment once per block.
Any main treatment can be adjacent to any other treatment, but not to the same
treatment within the block.
Page | 39
ANOVA table format:
Subplots X Treatments
(t-1)*(s-1) SSQSxT SSQSxT/(t-1)*(s-1) MSSxT/MSEs
(SxT)
t*(b-1)*(s- SSQEs/(t*(b-1)*(s-
Error-subplots (Es) SSQEs
1) 1))
Split-subplots X
(t-1)*(u-1) SSQUxT SSQUxT/(t-1)*(u-1) MSUxT/MSEu
Treatments (UxT)
Split-subplots X Subplots
(s-1)*(u-1) SSQUxS SSQUxS/(s-1)*(u-1) MSUxS/MSEu
(UxS)
t*s*(b- SSQEu/(t*s*(b-
Error-split-subplots (Eu) SSQEu
1)*(u-1) 1)*(u-1))
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3.3.1.3 FIELD MEASUREMENT FOR CASSAVA PLANTING IN CASSAVA
DENSITY TRIAL EXPERIMENT.
FIELD MEASUREMENT AND PEGGING: The different fields (i.e. D23,D19b,D15
&WBIII) were cleared using a tractor and measured using measuring tapes for accuracy and
precision. The cassava field was divided into two halves and one half was ridged while the
other half was kept unridged (i.e. flat land) this was due to the fact that while some farmers
preferred planting on ridges others preferred on flatland. On the ridged part, the field (which
served as block) was marked into plots using big bamboo pegs. The pegs, as usual, were on
the left side of the plot. The ridged part was divided into two sub plots one sub plot being
marked by for one cassava variety and the other sub plot for the other variety. The big
bamboo pegs that were used in mapping in each sub plot divided the subplots into four sub-
sub plot hence making a total of 8 sub-sub plot on the ridged part of the field. The same
procedures were also carried out on the flat land side of the field. These were done in all the
cassava density fields used for the experiment.
Small bamboo pegs were made and used in marking vertically on the sub plots (i.e. the ridge
and flat lands) the exact points on the field where the cassava stems would be planted to ease
the stress in measuring again during the planting proper. The tapes were stretched from one
point on each row in the field to the other extreme end where it ended and tensioned for
accuracy. On each row, the numbers below were pegged on the ridge and flat land at the
exact point where it was on the tape touching the ground. Two sub plots were pegged for
planting at the same time because they were just lying side-by-side each other.
FIRST PLOT (in m): low to high
1.00 2.00 3.00 3.90 4.80 5.70 6.60 7.40 8.20 9.00 9.80
10.50 11.20 11.90 12.60 13.20 13.80 14.40 15.00 15.50 16.00 16.50
17.00 17.40 17.80 18.20 18.60 19.00 19.30
SECOND PLOT (in m): high to low
19.90 20.00 20.40 20.80 21.20 21.60 22.10 22.60 23.10 23.60 24.20
24.80 25.40 26.00 26.70 27.40 28.10 28.80 29.60 30.40 31.20 32.00
32.90 33.80 34.70 35.60 36.60 37.60 38.60 39.60
It was from these spacing that the density trial was effected. Some pegs had 1m spacing
while others had 90cm and others 80cm, 70cm, 60cm, 50cm, 40cm, and 30cm respectively.
The plot numberings were done by assigning ordinary numbers to each and then using big
bamboo pegs to mark where a new plot started. On the pegs also were alphabets like (RIF),
(FMN) etc which denotes ‘Ridge Intercrop Fertilize’ and ‘Flat Monocrop Nil’. These connote
that the plot was on ridge/flat land and it was a mono/inter cropping system and it was to be
fertilized or not during the fertilizer application.
CASSAVA PLANTING PROPER : The stems of the two cassava cultivars (TME 419 and
TMS 97/2205) were cut into small pieces of about 15cm. each cultivar’s stem were planted at
the spots where the small bamboo pegs that were used earlier during the measurement were
Page | 41
placed. The cassava stems were planted in such a way that two-third (2/3) of the whole stem
were below the ground only one-third (1/3) of the stem were above the ground. Care,
however, was taken to make sure that the nodes on the stems were facing the sky as those
were where the emerging young leaves would emanate from when they start germinating.
3.3.1.4 FERTILIZER APPLICATION IN THE CASSAVA DENSITY TRIAL
EXPERIMENT
Fertilizer application was one of the procedures that were undergone during the course of the
experiment. The 10 Weeks old cassava plants were fertilized with different kinds of IFDC
trial fertilizers as and when due. Worthy of note, was however, that not all the sub-sub plots
were fertilized during the periods of any fertilizer application. This was to incorporate into
the research the aspect of testing for the effect of fertilizers on the yield. Hence, pegs with
numbers like CD/RMN/02 or CD/FIN/12 means that that was a cassava density experiment,
ridge/flat, monocrop/intercrop, no fertilizers then the serial number. This helped during the
fertilizer application to know which plots were to be fertilized and which ought not to be
fertilized. The fertilizers applied were NPK 15:15:15 at 200 kg / ha at 2 weeks after planting,
followed by a dressing of urea equivalent to 30 kg/ha of N. A third application of KCl was
conducted at 4 months after planting at an equivalent of 45 kg/ha K. Care was taken not to let
the fertilizers be in very close contact with the cassava stems.
3.3.1.5 FIELD EVALUATION AND DISEASE CHECK IN THE CASSAVA DENSITY
TRIAL EXPERIMENT FIELD.
For the cassava density trial experiment field evaluation, it involved routine evaluation of the
cassava plants to check for the number that germinated in each plot, if the pegs were still in
place and if the ridges were still as they should etc. necessary actions were taken to restore
and amend these abnormalies in the field. The weeds in the field were also taken care of
monthly throughout the course of the experiment. As part of the experiment, the heights (in
cm), number of main stems on each cassava plant, number of branches on each plant too was
checked and recorded fortnightly. (Appendix **** record sheet for the data collection). From
the evaluation, it was noticed that although TME419 surpassed TMS 97/2205 in terms of
heights of the main stems, the later had more main stems and branches per plant than the
former.
Also worthy of note was the virus-assessment done in the two cassava variety fields. The two
cassava cultivars were assessed and graded based on the gravity of the viral symptoms and
spots found on the leaves. Although the two cultivars showed some sign of infection by the
virus, the symptoms were however more conspicuous in TME419 cultivars than in TMS
97/2205.
Page | 42
EVALUATING FOR CGM
1 = apparently no visible symptoms
.
FIG 3.3 Cassava field assessment and data taking
Page | 43
the fact that cassava takes a longer time before it is harvested whereas maize doesn’t and
hence the reason for their intercropping.
3.3.1.7 CASSAVA-MAIZE INTERCROP IN THE CASSAVA DENSITY TRIAL
EXPERIMENT.
The cassava-maize intercrop was carried out in the cassava density experiment fields also.
This was to check the effect on yield of the cassava and the maize at various planting
densities and also to check for the differences in yield between the monocrop (i.e. cassava
alone and maize alone) fields and the intercrop fields.
The maize was planted on both ridges and flat land with a vertical spacing of 20 cm between
each maize plant and a horizontal distance of 75cm.
The intercrop fields had the same field layout as the monocrop save for the two crops. As in
the monocrop, pegs with inscriptions like RIF** or FIN** means that the field is ridged/flat,
the cropping system is intercrop and it would receive fertilizer treatments or none.
Field evaluation and plant assessments were also carried out in the intercrop fields as well.
The heights (in cm), number of main stems on each cassava plant, number of branches on
each plant etc were also checked and recorded fortnightly as in all cassava density trial
fields.
The maize variety used, TZL comp.3 DT F2, was gotten from the Maize Breeding unit of the
institute. The maize cultivar was treated with CIBAPLUS, an insecticide cum fungicide
which protects the seed from most pests and fungal diseases attacks.
3.3.1.8 MAIZE HARVESTING IN A DENSITY TRIAL EXPERIMENT.
The maize plants used in the density trial experiment for cassava were harvested four months
after the time they were planted. The harvesting was done in a systematic and careful manner
so as not to alter the research results or make it erroneous. The harvesting involved the use of
ropes tied to pegs to demarcate the different densities on each field in the rows. That is to say
that those with 1m gap were demarcated from the border using a rope tied to two pegs that
had 1m inscribed on it. This applied to those with 90cm gap (i.e.0.9m), 80cm (0.8m)…30cm
(0.3m).
The maize in each batch were harvested separately row by row (there were 6 rows in each
plot). The results required and recorded for the experiment include the number of maize
stands in each row in a batch, the number of fresh o.k. cobs and the number of bad cobs.
After each harvest in a batch, the total mass (in kg) of the fresh o.k. cobs were weighed and
also recorded same as that of the bad cobs in each batch too. Sub-samples of the fresh o.k.
cobs from each batch were taken and put inside paper bags and weighed. This weight (in g)
would serve as the fresh cob weight of the batch during the result analyses.
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3.3.1.9 MAIZE POST-HARVEST PROCESSES IN THE DENSITY TRIAL
EXPERIMENT
The post harvest processes involved in the density trial experiment as pertained to maize
include the oven-drying, the shelling, grinding, weighing, laboratory analyses etc. after the
harvesting of the maize in each of the density fields, the sub-samples from each batch were
paced in the oven at a 65°c centigrade temperature for about 2-3 days to dry. The weight of
the dry o.k. cobs were recorded after the drying. The maize cobs were shelled (i.e. the act of
removing the grains from the cobs) and the dry weight of the grains were also taken. The dry
grins were grounded into powdery form and further wrapped in nylons according to batches
and plots in preparation for the laboratory analyses that would be run on them.
In general, the cassava density trial experiment was more rigorous and demanding than the
omission trial experiment in cassava but however, I learnt a lot from the works which I did
during the course of my training in the unit.
Yam, also one of the mandate crops of IITA, was used by the Agronomy unit of the institute
in their density trial experiment.
The yam density trial experiment was carried out to check the different planting densities that
would be most efficacious and cost minimizing and the effect of intercropping at such
density on the yield of yam. It also tried to analyze the tillage type on which the efficacious
density was most efficient and the effect of fertilizers on the yield of the yam
The experiment involved systematic processes spanning from the field clearing and
measurement, pegging and plot numbering, border demarcation and yam planting proper to
fertilizer application, field evaluation and disease-check (scoring), maize planting and
harvesting together with the post-harvest processes. Also worthy of note is the Factorial in a
Split-plot experimental design adopted in the course of the experiment.
Page | 45
into plots using big bamboo pegs. The pegs, as usual, were on the left side of the plot. The
ridged part was divided into 4 sub-plots and on each were planted the same species of yam
(Dioscorea rotundata). The same procedure was also carried out on the flat land side of the
field.
Small bamboo pegs were made and used in marking vertically on the sub-plots (i.e. the ridge
and the flat land) the exact points on the field where the yam seedlings would be planted after
treatment to ease the stress in measuring again during the planting proper. The tapes were
stretched from one point on each row in the field to the other extreme end where it ended and
tensioned for accuracy. On each row, the numbers below were pegged on the field at the
exact place where it was on the tape. Two sub-plots were being pegged for planting at the
same time because they were adjacent each other.
FIRST PLOT (in m): low to high
1.33 2.66 3.99 4.99 5.99 6.99 7.89. 8.79 9.69 10.49 11.29
12.09 12.79 13.49 14.19 14.89 15.49 16.09 16.69 17.29 17.79 18.29
18.79 19.29 20.09 20.49 20.89 21.29 21.59 21.89
SECOND PLOT (in m): high to low
22.19 22.49 22.89 23.29 23.69 24.09 24.49 24.99 25.49 25.99 26.49 27.09
27.69 28.29 28.89 29.59 30.29 30.99 31.69 32.49 33.29 34.09 34.99 35.89
36.79 38.79 39.79 41.12 42.45 43.78 45.11
It was from this spacing that the density trial was effected. Some pegs had 133cm spacing
while others had 100cm and others 90cm, 80cm, 70cm, 60cm, 50cm, 40cm, and 30cm
spacing respectively. The plot numberings were done by assigning ordinary numbers to each
and then using a big bamboo peg on which the numbering was inscribed to mark where a
new plot started. On the pegs also were alphabets like RIF, FMN etc which denote ‘Ridge
Intercrop Fertilize’ and ‘Flat Monocrop Nil’. These connote that the plot was on ridge/flat
land and it was a mono/inter cropping system and it was to be fertilized or not during the
fertilizer application.
YAM PLANTING PROPER: The seedlings of the yam species D. rotundata were cut into
pieces of 80-100g and treated with cypermethrin and z-force. The yam seedlings were later
taken to the field for planting and were planted at the spot where the small bamboo pegs that
were used earlier during the measurement were placed.
3.3.2.2 FERTILIZER APPLICATION IN THE YAM DENSITY TRIAL
EXPERIMENT.
Fertilizer application was one of the procedures that were undergone during the course of the
experiment. The……weeks old yam were fertilized with different kinds of fertilizer as and
when due. Worthy of note was however, the fact that not all the subplots were fertilized
during the periods of any fertilizer application. This was to incorporate into the research the
Page | 46
aspect of testing for the effect of fertilizers on the yield. Hence, pegs with numbers like
YD/RMN/02 or YD/FIN/12 means that that was a yam density experiment, ridge/flat,
monocrop/intercrop, no fertilizers then the serial number. This helped during the fertilizer
application to know which plots were to be fertilized and which ought not to be fertilized.
Variables
1 Height
2 Branching
3 Number of leaves (canopy status)
Keys:
Height
Absent = 0
0 - 60 cm= 1
61 – 120 cm = 2
121 – 180 cm = 3
181 – 300 cm = 4
301 and above = 5
Branching
Absent = 0
2 - 10 = 1
22 – 20 = 2
22 – 30 = 3
32 – 40 = 4
Page | 47
>40 Branches and reaching on top of the stake = 5
Number of leaves
No fully expanded leaves = 0
Few leaves close to the ground ranging from 0 - 20 = 1
Few leaves stretched along vine up to 120 cm = 1.5
Leaves ranging from 21 - 40 = 2
Leaves (21 - 40 ) stretched along vine up to 180 cm = 2.5
Leaves from ground to 180 cm height but > 40 = 3
Leaves ( > 40 ) stretched along vine up to 300 cm = 3.5
Leaves up to 300 cm height but > 60 = 4
Leaves on top of stakes but > 80 = 5
Also in the assessment was the use of spad (pic) to measure the chlorophyll contents in the
leaves of the yam plants. The surface area of the yam leaves were also measured using a leaf
area meter (pic…)
Page | 48
3.3.2.5 MAIZE HARVESTING IN A DENSITY TRIAL EXPERIMENT.
The maize plants used in the density trial experiment for yam were harvested four months
after the time they were planted. The harvesting was done in a systematic and careful manner
so as not to alter the research results or make it erroneous. The harvesting involved the use of
ropes tied to pegs to demarcate the different densities on each field in the rows. That is to say
that those with 1m gap were demarcated from the border using a rope tied to two pegs that
had 1m inscribed on it. This applied to those with 90cm gap (i.e.0.9m), 80cm (0.8m)…30cm
(0.3m).
The maize in each batch were harvested separately row by row (there were 5 rows in each
plot). The results required and recorded for the experiment include the number of maize
stands in each row in a batch, the number of fresh o.k. cobs and the number of bad cobs.
After each harvest in a batch, the total mass (in kg) of the fresh o.k. cobs were weighed and
also recorded same as that of the bad cobs in each batch too. Sub-samples of the fresh o.k.
cobs from each batch were taken and put inside paper bags and weighed. This weight (in g)
would serve as the fresh cob weight of the batch during the result analyses.
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3.4 CULTURAL PRACTICES IN SOIL FERTILITY MANAGEMENT
Agronomy, as already defined, is a branch of agriculture that not only involves crop
production but also the soil and its management. The Agronomy unit of IITA being headed
by a seasoned agronomist made sure that their activities spanned through all the scopes of the
field starting from crop production to soil management. Two techniques were adopted by the
unit in restoring the fertility of an agricultural land viz: Bush fallowing and Cover cropping
(using Mucuna pruriens). My scientist, Dr. Stefan Hauser, was trying to evaluate between the
two techniques which would be more efficacious. He, though not as a full-time or result-
oriented research, wanted to explore other potentials of the plant as it was said to suppress
nematode population (J.A. Adediran et.al, 2005), help reduce labor involved in weeding and
control of most noxious weeds like Imperata cylindrica (Akobundu and Udensi, 1995) and
its ability to restore up to about 70% of soil fertility.
3.4.1 AGRONOMIC PRACTICES IN THE USE OF Mucuna pruriens IN THE
CULTURAL PRACTICE OF SOIL FERTILITY MANAGEMENT.
Mucuna seeds were planted on a field (F23) that had been used previously for intensive
farming. The land was measured and marked into 8 blocks (plots). 4 plots taken
systematically (i.e. every 2 nd plot) was used for the planting. On each plot, 20 seeds were
planted on each column and 60 on each row. The plants were staked with bamboo stakes as
soon as their tendrils were able to trail them. The mucuna plants were to be left in the field to
grow, mature and produce seeds which would be later be harvested and stored and the vines
left to wither in the field.
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CHAPTER 4
NEMATOLOGY UNIT
4.1 INTRODUCTION
Nematodes are a diverse group of worm-like animals found in almost every environment
both as parasites and as free-living organisms. They are mostly found in wet surroundings
which aid their movement and other activities. They move in the film of water that surrounds
soil particles and the moisture contained in plant tissues.
Most nematodes inhabit the soil and are microbial feeders or predators on other soil
organisms but some parasitize plants and are known as Plant Parasitic Nematodes (PPN).
Plant nematodes are divided into parasitic and non-parasitic (K.P.N, Kleynhans, 1999). The
parasitic ones are differentiated from the non-parasitic in the possession of a movable,
needle-like structure called stylet in the mouth cavity which they use to puncture plant cells
to inject digestive enzymes and draw the modified cell contents into their esophagus.
Because nematodes are difficult or impossible to see in the field, and their symptoms are
often non-specific, the damage they inflict is often attributed to other, more visible causes.
The Nematology/Striga unit of the IITA is the section charged with the duty of curtailing the
menace caused by these worms in the field. Since damage by these worms is one of the most
resounding constraints to sustainable crop production that farmers in Africa have to contend
with and IITA, being a research institute that seeks to alleviate agriculture in Africa through
its research for development projects, has taken it upon itself to fight these cankerworms to
the barest minimum where their activities would be most insignificant to affect crop yield.
The activities of the unit include research for crop protection and improvement, sample
analyses and data evaluation, healthy practices in crop planting etc. They also assist research
fellows (M Sc, PhD, etc) in their researches and service other units within the institute that
needs professional guidelines on nematode control with their unalloyed services and
guidelines.
During my training in the unit, I was opportuned to witness, partake and learn some of the
procedures and practices in the field of Nematology ranging from the sample collection,
extraction techniques, nematode identification, fishing of nematodes and culturing of
nematode to soil sterilization for nematode multiplication. I was also privileged to operate
some equipment and machines which, had I not been here, may not have seen or operated.
My stay in the unit, suffice it to say, was really a worthwhile adventure as I grabbed some
practical knowledge (that are really career-changing) in phytonematology which would
enable me digest the theoretical aspect I got from the lecture hall.
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4.2 NEMATODE SAMPLING
Due to the destructive nature of these worms and the need for agricultural development and
yield improvement, plant parasitic nematodes are being sampled in both the soil and the plant
tissues. Nematode sampling is much needed to diagnose nematode-related problems.
Usually, roots of plants, soil and above-ground plant tissues , are sampled for nematodes.
When only soil is sampled, the samples are generally taken to a depth of 15-20cm.
nematodes are not uniformly distributed in the soil (David J. Hooper et.al, 2005). Areas of
nematode damage may be circular to oval or rectangular in outline.
Sampling for stem and foliar nematodes should be from symptomatic plants. Most migratory
plant parasitic nematodes are found around plant roots and hence the need to also take root
samples.
Soil samples and plant materials to be examined for nematodes should be kept moist. Also,
labeling of samples is also a very important step in nematode sampling.
Nematode sampling equipment include: spade, a hand trowel, soil auger, knives, scissors,
polythene bags, envelope bags, tags, cool box, writing material (permanent marker).
Absence of nematodes in a sample may indicate their absence in the sampled field, but may
also indicate that the populations are too low to be detected by sampling.
Soil samples are collected from fields suspected for having nematode population built up in
it. This could be for either research purposes, to assess the nematode population in the given
field or to collect the nematodes for identification, culturing or multiplication for further
research works.
Nematodes are usually, as stated before, not evenly distributed in a field and soil sampling
procedures need to take this into account to obtain a true representative sample.
Taking enough samples, should however be a good admonition, to ensure they are a true
representative of the situation in the field. The greater the number of sub-samples/cores
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combined for each field sample, the more accurate the assessment will be. A balance between
available time for the sample collection and resource is, however, necessary.
For plots up to 100sq.m in area, at least 20-30 sub-samples (cores) were taken per sample.
For uniform areas up to 1hectare, at least 50 sub-samples were taken. In an
experimental/research field, sub-samples that would incorporate the various treatments
applied in the field were taken. However, sampling very wet or very dry soil was avoided
except in cases where they must if samples from such area should be needed. Usually few
nematodes occur in the top 5cm of soil which can be discarded from samples. Nematodes are
most abundant within the root zone and for shallow-rooted crops, samples were taken to a
depth of about 20-30cm. this was made possible because of the use of soil auger. Random or
systematic (i.e. ‘W’ or ‘zig-zag’ pattern) sampling patterns are two sampling patterns used
for soil sampling for nematodes.
After the collection, the soil auger was placed in a plastic plate and with a strong blunt stick,
all the conents of the auger were scraped into the plate. Care was taken to ensure that all the
soil sample in the auger were removed before taking another sample. The samples wer later
put in polythene bags with a tie at the top well labeled with permanent marker. The label bore
the following information:
The location
The sampling date
Plot number (if it were within an experimental field)
Treatments applied to the field/crops grown
After collection and labeling, the samples were placed in a cool box and later taken to the
lab for further research works.
FIG 4.2 soil sample collection FIG 4.3 scraping of FIG 4.4 well packaged
the sample into a plate and labeled soil sample
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FIG 4.5 The soil sample stored in a
cool box to be taken to the lab.
Nematodes are often found in highest numbers in the root zone of the crops towards the end
of the growing season. Badly stunted plants may have too small a root system to support
many nematodes, and samples from nearby, less affected; plants may yield more specimens
(D.J, Hooper et.al, 2005).
Root samples can be collected at the same time and from the same locations as for soil.
Generally, 25-100g of roots per total sample is sufficient, but a lower weight may be
collected for finer roots such as from rice and a higher weight for thick roots such as from
plantain. Dead plants or those in advanced stages of senescence are usually not sampled as
nematodes would have migrated from these to other food sources (roots).
Lift the plants and their roots from the soil using a hand trowel (spades can also be used), so
that a sizeable proportion of the root system is unearthed intact, and taking care not to break
off the roots and leave them in the ground. After tapping soil free, randomly remove roots
with a knife or scissors. A visual examination can be made of roots e.g to detect the presence
of galls or nematode egg masses, females or cysts.
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nematode infested yam tuber nematode infested lettuce root
Place the root samples inside polythene bags and tie the mouth with a tag carrying the labels
or put in a paper envelope and boldly label on the envelope. The samples are either taken to
the lab immediately or kept in a cool place away from the heat of the sun.
After sample collection for nematode sampling, the next stage was to extract nematodes
from the samples. This was usually done as soon after the sampling as possible to avoid
sample deterioration.
Various methods and techniques to extract nematodes from soil and plant tissues have been
developed and were employed by the unit for her extractions.
There are 5 extraction methods employed by the unit for extraction of different kinds of
nematodes from different types of samples viz:
The choice of which method to use depends on the conditions and materials available, the
sample type and also the kind of nematodes available.
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TYPE OF SAMPLE Soil sample Root/foliar sample
KIND OF NEMATODE Sedentary Migratory Sedentary Migratory
nematodes nematodes nematodes nematodes
Extraction tray method × ×
Sieving method × ×
Maceration (blending) × ×
method
NaOCl method × ×
Centrifuge method
Table4.1 the suitability of extraction methods for different kinds of nematode and types of samples
Before the extraction proper begins, the samples would be prepared for the exercise by
mixing the soil samples thoroughly, breaking up clumps and removing stones, roots and
debris. Roots are separated from the soil by tapping gently or rinsing gently under a tap
water, drying and then chopping into desired sizes. Care, however, was taken not to mix up
the labels or their containers.
4.3.1 PIE-PAN/EXTRACTION TRAY METHOD
This is the modification of the Baermann-funnel technique. It extracts only live, active
nematodes from the soil and plant materials. It is a very simple technique.
Equipment needed include: A sieve with coarse mesh
A tray /plate, slightly larger than the sieve
Extraction paper
Beakers or cups to wash the extract into
Wash bottle
Permanent marker
Knife/scissors
Weighing balance
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be added to each dish to wet but not cover the soil, however ensuring there was
sufficient not to dry out.
VI. The apparatus would be left undisturbed for 48 hours so that the nematodes can easily
swim out of the soil and into the water.
VII. After the extraction period, the extraction paper and the soil sample are discarded.
VIII. Next, the water from the tray/plate would be washed into a labeled beaker, using a
water bottle to rinse the plate. The extract suspension was then, after the transfer,
ready for further research works.
I II IV &V
VI VII VIII
FIG 4.7 Extraction tray method for soil samples
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Beakers and bucket
Equipment needed include (for soil nematodes):
Funnels
Extraction papers/filter paper
I. Fill a bucket with six liters of water. Mark a water line on the inside of the bucket
with a permanent marker for consistent water volume between samples gotten for the
same purpose.
II. Place a sub-sample of sieved and mixed dry soil measured by displacement of water
in a beaker (i.e. if a 300ml beaker is filled with water to the 200ml mark and then
soil samples were added and it rose up to 300ml then it meant that 100ml of soil
samples was added to the beaker) into the bucket.
III. Stir the mixture thoroughly using hand. Allow larger particles to settle for 30 secs.
IV. Slowly pour off the upper ¾ of the water through the nested sieves: use the 2mm to
catch the debris for disposal and 90µm and 38µm to capture the nematodes. Care
should be taken when sieving proper is done so as not to lose the nematodes.
V. Refill the bucket to the marked line and repeat the process once or twice.
VI. Wash off the debris from the 90 and 38µm sieves into a well labeled cup, ensuring
that the sieves are properly cleared by washing them from behind.
VII. Leave the cup for 2-3 hours for nematodes to settle at the bottom. Gently decant
excess water and set ready for further usage.
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VI. Refill the bucket to the marked line and repeat the process as much as necessary until
one is satisfied that no cysts remain in the bucket.
VII. Prepare and label a paper lining (using an extraction paper/filter paper) for a funnel
held in a stand or in a beaker.
VIII. Pour the wash-off suspension in the beaker through the filter in the funnel. allow
water to drain through.
IX. Carefully remove the extraction papers from the funnel and place in a moistened tray
to await observation under the microscope. Viewing can be done under a
stereomicroscope.
I ii iii
v vii viii
ix
FIG 4.8 sieving method for cyst extraction
This is a quick and useful method of examining roots for the presence of some nematodes.
Soil samples cannot be extracted using this technique.
Beakers
Equipment needed for the extraction include:
Weighing balance
Scissors/knife Domestic blender
Wash bottle
Permanent marker
Procedure:
I. Wash the root samples gently to remove soil particles.
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II. Cut the roots or tuber peels into tiny pieces.
III. Weigh a sub-sample. Place it in an electric blender with just enough water to cover
the blades.
IV. Run the motor for 10-30 secs intermittently for 3 times. The time and frequency
varied according to the amount and kind of materials being processed.
V. Pour the blended suspension of roots and water into a beaker, rinsing out the blender
container of all debris, using a wash bottle.
VI. Set up an extraction tray apparatus and gently pour the suspension into the extraction
paper.
VII. Then the next procedures follow that of the extraction tray method.
ii iii iv
v vi
FIG 4.9 blending method of extraction
4.3.4 SODIUM HYPOCHLORITE (NaOCl) TECHNIQUE (HUSSEY AND BARKER
METHOD)
This extraction technique was designed by Hussey R.S and Barker, K.R in 1973 basically for
the extraction of meloidogyne eggs in roots to be used for inoculation.
A conical flask
Materials needed for the extraction include:
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IV. Weigh a sub-sample. Place it inside the conical flask. Pour the NaOCl solution and
shake vigorously for 2-4 mins.
V. Quickly pass the mixture through a 200 mesh (i.e 75µ m) sieve nested over a 500mesh
(26 µm) sieve to collet freed eggs.
VI. Quickly place the 500 mesh sieve with eggs under a strem of cold water from the tap
in order to remove the residuals of the NaOCl. Rinse for several minutes.
VII. Rinse the remaining roots in the flask with water.
VIII. Using a wash bottle, rinse the extract on the 500-mesh sieve into a beaker of known
water capacity(say 200ml) and use clean water to bring the volume up to the200ml
mark.
IX. Then using a Pasteur pipette, take a sub-sample of the extract and view for counting
under the stereomicroscope.
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Order Dorylaimida
Order Tylenchida
Order Aphelenchida
The three orders can be differentiated morphologically using some parameters:
However, individual nematode species in the same order were identified using other
morphological features like the presence/absence of a vulval region/spicules and their
position (in %) on the body length, the type of esophageal overlap (posterior or anterior) etc.
STYLET
OESOPHAGUS
VULVA
OVARY
ANUS
INTESTINE
The tedious task of counting large numbers of nematodes can be eased by extracting several
fixed-volume sub-samples of nematodes from a suspension and counting them in graduated
microscope counting slide (pic.).
Usually, Pasteur pipettes are used to take a sub-sample from the suspension extract and
viewed under the microscope, the different nematodes seen in the sample are identified to
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generic level and the number of species in each genus counted using a handheld counter (pic)
and the figure derived, recorded in the nematode counting sheet. After the first count, the
sub-sample is usually returned to the suspension and the counting procedure repeated two or
more times and then estimate of the standardized number of eggs/nematodes per ml and
inversely the whole suspension is made.
After the identification and assessment, the nematode genus that would be used for a further
research work or for culturing were usually ‘fished’ out from the suspension and placed on a
glass petri dish. This is usually a no-easy task but gets easier with practice.
Various instruments can be used for the fishing e.g. a fine insect pin, a bamboo splinter,an
eyelash, a sharpened toothpick.
The procedure for the fishing is thus:
I. Pour or use a pipette to place some of the nematode suspension into a
petridish/counting dish.
II. Place on a stereomicroscope using the lowest convenient magnification
III. Locate a nematode and gently lift the nematode to the surface of the water with the
fishing tool. Adjust microscope focus to keep the nematode in view whilst fishing the
nematode out of the water solution.
IV. Holding the fishing instrument under the nematode, lift the nematode out of the
water. The nematode should be hanging on the tip of the picking instrument.
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V. Gently place the tip of the pick into a drop of water on a slide.
VI. Cover the slide with the coverslip and view under compound microscope.
Knife/peeler
Materials used:
tissue paper
Spatula heat source
Culturing media (carrots) forceps
Micro flow laminar workstation kanisters
10ml measuring cylinder Bulb pipette
Carmel hair brush Petri-dishes
Protocol: A named nematode genus was extracred and fished out for culturing for further
research work (inoculation). The metal equipment were sterilized in an auto clave (120ºc) for
15 mins. The equipment were placed inside the laminar workstation with the carrot (the
culturing media) washed and wrapped in tissue paper. Using an ethanol spray to sterilize the
hands too to avoid contaminating the medium, the forceps were picked and used to hold the
carrots. The carrots were cut into sizeable rings and each ring placed in a petri-dish.
0.06g of streptomycin was measured and poured into a 10ml of water in a measuring
cylinder. Then, the fished nematode species were put inside the solution.
Using a Pasteur pipette, the nematode solution were inoculated (about 3-4 drops per dish)
into each petri-dish containing the culturing media and on top of the media. The petri-dishes
were covered and sealed with parafilm and then arranged inside a canister box and placed
inside the incubator.
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4.7 SOIL STERILIZATION
For screen house research experiments, the cultivars/ inoculants are not just planted on any-
how soil as such carelessness may make or in most cases mar the aim of the research. Soil
sterilization simply refers to making a quantity of research soil free from microbial
contaminations.
In IITA, soil for planting of cultivars in the screen house were sterilized before they were
used. There are 3 soil sterilization machines or ways of sterilizing a soil for research
plantings:
Use of electric sterilizer
Use of steam soil sterilizer
Use of the crude/ traditional method (i.e. cooking of the soil on fire for 2 hours).
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PROBLEMS ENCOUNTERED DURING THE TRAINING
AND OPINED SOLUTIONS.
The International Institute of Tropical Agriculture (IITA) was like a home away from home
for me during my training days there. I was so keen to learn and they were also eager to
impact knowledge. In fact I found it a bit difficult to write this section of my report about the
institute. But however how good a system is, it must have its short comings. IITA being a
human-run institution has its short-comings pertaining to SIWES training.
One of the institute’s short comings was their inability to provide accommodation for us. Due
to the nature of the job we do; research for development, the work area ought not to be left
far from the worker’s abode so as to easily be near your research works and see to its timely
conclusion.
Another short coming of the institute is their un-organized SIWES training unit. The unit,
apart from the student’s unit supervision, does not do any supervisory work to check on the
student’s progress in his/her attached unit.
In my opinion, I would suggest that the institute build a residential area for her workers to
enable them to be closer to their research works inside the institute.
Also, for the training unit’s case, I would suggest the management braces up the unit and
sensitize and mobilize them on how to cater for the general well-being of the trainee students
they admit for training.
In all, the institute, in my own view, is the best in terms of human management and training
in areas of agricultural research for development.
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CONCLUSION AND GENERAL APPRAISAL OF THE
PROGRAM.
The SIWES has positively contributed to my training as a future researcher. At the SIWES
workplace (i.e. IITA), I was able to reconcile theoretical principles learnt in school with real
parasitological and entomological practices especially in the agricultural aspects. I also learnt
various techniques and research procedures that are relevant to my course of study and would
help nurture me into my future career as a researcher, the biostatistics I learnt and employed
in some of the experiments carried out in some of the units I was attached helped in
broadening my view and in applying all that I was taught in Bio303 (Biometry) and
STAT202 (Biostatistics for Agric and Biosciences ) respectively in school. Furthermore, I
received extensive training on the basic laboratory ethics required of a research scientist. I
was also, thanks to this SIWES program, able to go for agric-extension works outside my
SIWES work place and in most remote farmer-areas for sample collections and or for any
other research purposes as may be required.
In general, SIWES gave me the opportunity to learn about good work ethics, good
interpersonal and communication skills necessary to prepare me for the real work situation I
will meet after graduation and expose me to work methods and technics in the handling of
research equipment and machinery that I haven’t seen before and finally make my transition
from school to the labour market smooth and enhance my contacts for later job placement.
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REFRENCES
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suppression in 3 agroecologies of south-western Nigeria. African journal of
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Akobundu, I.O. and Udensi, U.E.(1995) Effects of Mucuna species and fertilizer levels
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Myers, P., R. Espinosa, C. S. Parr, T. Jones, G. S. Hammond, and T.A.Dewey.(2013).
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APPENDIX
APPENDIX A
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