Introduction All higher organisms, including humans, have a constant bacterial flora associated with them.

These interactions are typically assumed harmful as with pathogenic infections, but are often beneficial. One of the most important relationships is the mutualistic symbiosis whereby both the host and symbiont benefit. For example, Bacteroides in the intestines of mammals acquires nutrients from their hosts while breaking down complex polysaccharides into short chained fatty acids for the host (1). Ruminococcus in the cows rumen digests starch while acquiring nutrients from the cow (2). Long-term associations are typically initiated early in life and the host must be able to recognize and select for its symbiont. The Hawaiian bobtail squid Euprymna scolopes and the bioluminescent bacteria Vibrio fischeri make up a good system for symbiosis studies. V. fischeri is an excellent subject for study because it is the only species that can colonize in the E. scolopes light organ. This reduces the chance for contamination and interference when studying the symbiosis. Also, the symbiotic model is tractable because both V. fischeri and the squid are easily manipulated in the lab. The basis of the symbiosis is the ability of V. fischeri to provide protective luminescence camouflage to the squid E. scolopes which is a target for predators in the ocean; the camouflage eliminates the shadow that the squid may cast from moonlight. At the same time, E. scolopes provides growth nutrients including carbon and nitrogen for V. fischeri. Hatchling squid do not initially have symbionts in their nascent light organs. The V. fischeri symbionts are acquired after exposure to sea water, which contains a plethora of bacteria. While E. scolopes does not have adaptive immunity, it can discriminate between the millions of bacteria it contacts to select V. fischeri as the light organ colonizing species (3).

Even though there are aspects of the symbiosis that arent completely understood, luminescence is well characterized and known to be the main factor that is necessary in the squid-Vibrio relationship. Luminescence is directed by quorum sensing, which is a cell-to cell signaling mechanism typical of interacting bacterial species (4). When the bacterial population reaches high density, autoinducer (AI) molecules accumulate to a high enough concentration to activate the lux operon which encodes for factors necessary for luminescence. LuxI encodes for the AI molecule (3-oxohexanoyl l-homoserine lactone), which continues to stimulate luminescence in the colony; lLux R codes for the lux gene regulator that senses AI, andwhich turns on the rest of the lux operon; LuxAB encodes for luciferase, which is responsible for catalyzing luminescence; luxCDE encodes for proteins which are necessary for aldehyde production, which yields necessary substrate for luminescence; (Figure 1). Using substrates oxygen and aldehyde, luciferase emits light. In the presence of high amounts of oxygen and without luciferase, H2O2 may be produced which creates oxidative stress on the bacteria (5). Also, when luciferase is present without aldehyde, it can only partially reduce oxygen, producing O2- which creates oxidative stress (Figure 2). In addition to luminescence, phenotypes such as resistance to host generated oxidation (6), production of siderophore, sugar and nitrogen metabolism, motility, and hemocyte binding also contribute to V. fischeri colonization of squid. Siderophore is a soluble iron chelator that helps the bacteria gather iron in low iron level environments. Iron acquisition and utilization is essential for bacterial growth and likely contributes to symbiosis (7). Nutrient utilization is important for growth in the light organ (8) by V. fischeri. Motility and chemotaxis are important properties that allow the bacteria to travel to the light organ (9). Squid hemocytes
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bind better to V. fischeri mutants and other bacterial species than they do to wild-type V. fischeri (10), discriminating between symbionts and other bacteria. While luminescence is necessary for V. fischeri colonization of E. scolopes, other traits could also directly affect the symbiosis relationship. Because of this, it is possible that luminescence is linked to these other traits. Furthermore, the linkage could be the factor that makes both luminescence and the associated trait essential to V. fischeri colonization. To verify this idea, various V. fischeri mutants could be studied using luminescence and molecular techniques to identify linkage. Hypothesis: While luminescence is essential for colonization, there are other traits, such as metabolism, oxidative response, siderophore production, or hemocyte binding, necessary for survival linked to the lux gene expression or bioluminescence that to promotes symbiosis. Objectives: To identify mutations that influence luminescence To identify other traits associated with those mutation To develop and test specific hypotheses about how traits linked to light production influence decreased survival of LuxA mutants in squid. evaluate luminescence of various Vibrio fischeri mutants. Methods: Location: Rudman Hall room 222

Comment [CW1]: There is really no explanati here for why other traits would be linked to

luminescence. I think your prior description of the

defect of lux mutants is necessary here. And then you can say the defect is either due directly to bioluminescence because it enhances

fitness/survival directly, or some other attribute i

linked to light production that promotes fitness. Y

then need to go into the idea of how selection ma lead to this evolution (recall we discussed the

difference between population pressure and squi

pressure, and linking light to other necessary trait would mechanistically prevent cheaters from arising. So you need to talk about cheaters.

9. Appendices Figure 1. a) In quorum sensing, bacteria secrete autoinducers which instigate activation of lux gene in V. fischeri. b) Larger population would have stronger luminescence (13).

Figure 2. Black bars represent the population after 24 hours and striped bars represent the population after 48 hours. There is no significant drop in V. fischeri population in wild-type colonization after 48 hours. luxA, luxI, and luxR , all of which are dark mutants, dropped in population significantly after 48 hours (2).

Figure 3. With aldehyde, luciferase enzyme reduces oxygen and produces light. Without aldehyde, luciferase only partially reduces oxygen to O2- and does not generate light (12).

Figure 4. Procedure for evolution of mutants. Hatchling squid are colonized with bacteria and then each day they expel 95% of the bacteria and re-grow the population. After 4 days, the expelled bacteria are used to colonize new bacteria. This process is done for 15 squid (4)

Bibliography

Vibrio fischeri lux Genes Play an Important Role in Colonization and Development of the Host Light Organ
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