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PocketLAI: A Smartphone App. For Estimating Leaf Area Index
PocketLAI: A Smartphone App. For Estimating Leaf Area Index
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images
automatically acquired at 57.5
while the user is rotating the device
PocketLAI
PocketLAI IRRI, 8-11 October 2013
Images are acquired in
live-preview mode
Baret et al. (2010) Agr. For. Met. 150, 1393-1401
Processing
PocketLAI IRRI, 8-11 October 2013
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5 . 0
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5 . 57
LAI
e P
1) segmentation
2) Luminance (L, candela m
-2
) using device exposimeter
S t
k N
L
=
2
| =
above
below
L
L
P
0
N is the f-number or focal ratio
t (sec) is the exposure time
S is the ISO sensitivity
k is the reflected-light constant
correction factor for scattered radiation below
the canopy
PocketLAI Tests
1. Evaluation of PocketLAI and other indirect methods
(AccuPAR ceptometer, LAI-2000) for rice by adapting the
ISO 5725 protocol for the validation of analytical methods
2. Comparison with AccuPAR ceptometer for canopy
structures deviating from the assumption behind the light
transmittance model implemented in PocketLAI
PocketLAI IRRI, 8-11 October 2013
Confalonieri et al. (2013) Comput. Electron. Agric. 96, 67-74
Francone et al. (2013) Field Crop. Res. in press
PocketLAI Tests (1), methods
ISO 5725-2: Accuracy
PocketLAI IRRI, 8-11 October 2013
0
2
4
6
8
media = 4
media = 4
mean = 4
mean = 4
0
2
4
6
8
media = 4
media = 6
mean = 4
mean = 6
Trueness
Precision
Repeatability
(variability just due to
the replicate effect)
Reproducibility
(variability due to
different users, etc.)
Inter-laboratory tests
or ring tests
or ring trials
PocketLAI Tests (1), methods
Inter-laboratory tests (ISO 5725):
different laboratories
different operators for each laboratory
different levels for the analyte
different replicates for level, lab, operator
presence of reference materials
PocketLAI IRRI, 8-11 October 2013
trueness
repeatability
linearity
reproducibility
PocketLAI Tests (1), methods
Inter-laboratory tests (ISO 5725):
different laboratories
different operators for each laboratory
different levels for the analyte
different replicates for level, lab, operator
presence of reference materials
PocketLAI IRRI, 8-11 October 2013
4 groups, each composed of 4 students
different sowing densities
different moments during crop cycle
homogeneous (small) plots
split in quadrants
each quadrant corresponds
to a single replicate (to
avoid trampling effects)
LAI from destructive method (20 plants plot
-1
)
PocketLAI Tests (1), methods
Inter-laboratory tests:
1. outliers detection (among laboratories for each level)
Cochrans test (variances)
Grubbs test (means)
2. trueness (RMSE, ME, CRM), linearity
3. Precision
standard deviation, limit ( ) of repeatability
standard deviation, limit ( ) of reproducibility
PocketLAI IRRI, 8-11 October 2013
t s r
r
2 =
t s R
R
2 =
t = critical value of the Student t distribution (2 tails)
at 95% confidence level for n-1 freedom degrees
PocketLAI Tests (1), results
PocketLAI IRRI, 8-11 October 2013
App-L is the most accurate
The other methods present similar performances
PocketLAI Tests (1), results
PocketLAI IRRI, 8-11 October 2013
a
: repeatability limit. 1
b
: relative standard deviation of repeatability. 2
c
: reproducibility limit. 3
d
: relative standard deviation of reproducibility. 4
e
: laboratory 3 is an outlier according to the Cochran test. 5
f
: corrected value (s
r
set equal to s
R
in case s
r
> s
R
; Orwitz, 1995; Scaglia et al., 2011). 6
App-G:
one of the
most precise
App-L:
decidedly the
less precise
PocketLAI Tests (1), results
PocketLAI IRRI, 8-11 October 2013
No relationships between repeatability and LAI limit
Only App-L (luminance) presents a significant relationship
between reproducibility and LAI
Repeatability Reproducibility
PocketLAI Tests (2)
Assumption behind models for light transmittance into the
canopy:
Small leaves randomly distributed within the canopy
PocketLAI IRRI, 8-11 October 2013
Rice canopies do not deviate
so much
but others do!
PocketLAI Tests (2), methods
Three canopies markedly deviating from the assumption
behind light transmittance model
o maize: big leaves, row seeded
o giant reed: big leaves, row-planted, plants far from
each other, marked tillering aptitude
o grassland: often not homogeneous (no random
distribution)
We just compared PocketLAI estimates with those provided
by the AccuPAR ceptometer
PocketLAI IRRI, 8-11 October 2013
10 cm 10 cm
PocketLAI Tests (2), methods
Measurement protocols (1):
ceptometer
o maize: Facchi et al. (2010)
o giant reed & grassland:
PocketLAI
o maize:
o giant reed & grassland:
PocketLAI IRRI, 8-11 October 2013
Facchi et al. (2010) J. Ag. Eng. 1, 33-40
2 replicates
5 readings below 2 replicates
5 readings 2 replicates
PocketLAI Tests (2), results
PocketLAI IRRI, 8-11 October 2013
maize giant reed grassland
Giant reed (& maize):
overestimation for low values (big leaves + clumping effect)
underestimation for values higher than 5 m
2
m
-2
Grassland:
no systematic under/overestimations
more replicates needed (heterogeneity, AccuPAR 80 cm-probe)
PocketLAI Conclusions
PocketLAI resulted comparable for rice to commercial
tools for both trueness and precision
It represent a nice solution
o in contexts characterized by low availability of
resources
o when portability is an important requisite
o in cases when a large number of instruments is needed
PocketLAI IRRI, 8-11 October 2013
PocketLAI Remarks
It presented a device-effect (especially for low-cost
products), thus requiring to apply calibration facilities
(and the need for developing automatic calibration
facilities)
It resulted less robust in cases of canopies markedly
deviating from the assumptions behind light transmittance
models are (maize, giant reed, grassland)
An automatic selection of the segmentation algorithm
would
o improve user experience and
o reduce subjectivity in evaluating how cloudy the sky is
PocketLAI IRRI, 8-11 October 2013
Pocket N
PocketLAI IRRI, 8-11 October 2013
coming soon
PocketLAI IRRI, 8-11 October 2013
Simplicity is complexity resolved
(C. Brncui)
Thanks so much for the invitation
and for your kind attention