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SBU CHE 321 Final F13 Review Slides
SBU CHE 321 Final F13 Review Slides
SBU CHE 321 Final F13 Review Slides
CHE 321
Fall 2013
The final
Thursday, December 12, 8:00 10:45 AM Probably 18 multiple choice @ 5 pts, about 12 short answer @ 5 10 Rooms to be announced ONE index card Cover page at http://www.ic.sunysb.edu/Class/orgchem/che321/Exam_Cover.pdf
Synthesis library pKa table Chemical shift table IR peak table
Jonathan Khan
Solomons, T. W. G., Organic chemistry.
2013, Jonathan Khan. Under no circumstances may any part of this presentation be duplicated or used for commercial purposes. This material may not be reproduced for any use without explicit permission of the author.
The technique is always the same, expose a sample of your molecule to a specific type of electromagnetic radiation, collect data, the make a conclusion based off of the absorption/emission pattern of the molecule.
NMR Spectroscopy
Certain atomic nuclei such as 1H and 13C behave as if they were bar magnets spinning around an axis. When placed into a strong magnetic field and subsequently irradiated with electromagnetic radiation (usually in the radio range), these nuclei absorb some of the energy in a process called magnetic resonance. Each chemically inequivalent proton will resonate at a different frequency characteristic of the functional group to which it belongs.
Magnetic Resonance
When a pulse of electromagnetic radiation (specifically radio waves) is applied to the molecules in the magnetic field, it causes some of the spin-active nuclei to flip.
This causes the spin of the flipped nucleus to be aligned against the magnetic field. As the strength of the applied magnetic field increases, the energy required to flip the nuclei also increases
Chemical Shifts
For each nuclei resonating at a particular energy value, we see one signal on our spectrum corresponding to that energy value. An increase in resonance energy results in a higher ppm.
The position of the signal on the spectrum allows us to determine the chemical environment that the proton is sitting in.
For a standard proton spectrum, the value of the chemical shift will almost never go beyond 13ppm. Upfield and downfield are terms used to describe the position of the signal on the spectrum.
Downfield means at a higher ppm
Shielding
Shielding is a term used to describe the relative strength of the induced magnetic field felt by the proton. Caused by circulating electrons The magnetic field felt by a particular proton can be either:
Stronger than the applied field
Deshielded proton, caused by a decrease in electron density. Electronegative functional groups such as carbonyls and halogens draw electrons away from other groups
NMR Spectrum
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Clicker Question
How many 1H signals will this molecule give?
A. 9 B. 10 C. 11 D. 12 E. 13 F. 14
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Clicker Question
How many 1H signals will this molecule give?
A. 1 B. 3 C. 4 D. 5 E. 6 F. 7
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Integration Values
The height of a signal is called the integral The height of each peak represents the relative number of protons in the molecule which resonate at a particular chemical shift.
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Signal Splitting
Splitting is only seen in 1H spectra. Splitting arises due to changes in magnetic field caused by adjacent inequivalent protons.
Splitting
Splitting patterns can be predicted via the n+1 rule
N is the number of adjacent protons which are chemically inequivalent from our proton of interest. Addition of one to n, affords the splitting pattern. Protons used for n have to be chemically equivalent to each other, but inequivalent from the proton of interest. If there is more than one type of adjacent proton, such as on a double bond, the n+1 rule is done for as many proton types present. ABC because there is no free rotation around a double bond due to the pi bond. HA feels R and HB, HB feels HA and HC, while HC feels HB and R. therefore these protons are all in different chemical environments.
Pascals Triangle
Splitting for a particular proton can also be determined by using Pascals Triangle. Each row (n) represents the splitting pattern of a proton with (n) number of adjacent equivalent protons. If a particular proton has more than one type of adjacent proton, use Pascals triangle for each type of proton.
1 11 121 1331 14641 1 5 10 10 5 1 1 6 15 20 15 6 1 (0) (1) (2) (3) (4) (5) (6)
Clicker Question
How many peaks will the proton on the carbon be split into?
A. 1, singlet B. 2, doublet C. 3, triplet
D. 4, quartet
E. 4, doublet of doublets F. 6, triplet of doublets
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
13C
Spectroscopy
Go to the provided chart and match the chemical shift values to the corresponding functional group.
Clicker Question
How many 13C signals will this molecule give?
A. 11 B. 12 C. 13 D. 14 E. 15 F. 16
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Clicker Question
How many 13C signals will this molecule give?
A. 1 B. 3 C. 4 D. 5 E. 6 F. 7
Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Exam Problems
Move onto A.
Ozonolysis oxidizes olefins to carbonyls
Multiplet at 2.75, 1H
-proton
Doublet at 1.0, 6H
Dimethyl
And finally D
Reaction of A with CH2I2 and Zn(Cu) affords a hydrocarbon. CH2I2 and Zn(Cu) convert olefins into cyclopropanes via addition of a carbene.
Citations
All exam questions were taken from old exams posted on: http://www.ic.sunysb.edu/Class/orgchem/che321/oldexams.php All other images and figures were taken from: Solomons, T. W. G., Organic chemistry. Structures for the clicker questions were taken from: Ojima, I.; Chen, J.; Sun, L.; Borella, C. P.; Wang, T.; Miller, M. L.; Lin, S. N.; Geng, X. D.; Kuznetsova, L. R.; Qu, C. X.; Gallager, D.; Zhao, X. R.; Zanardi, I.; Xia, S. J.; Horwitz, S. B.; Mallen-St Clair, J.; Guerriero, J. L.; Bar-Sagi, D.; Veith, J. M.; Pera, P.; Bernacki, R. J., Design, synthesis, and biological evaluation of new-generation taxoids. J Med Chem 2008, 51 (11), 3203-3221.
Acknowledgements
Teaching me NMR
Joshua Seitz Jacob Vineberg Prof. Isaac Carrico Farhan Ahmed
A : B A+ + B:Reaction is heterolytic meaning we cleaved the bond giving the electrons to B creating an anion plus A a cation.
A:B
. A+
. B
Reaction is homolytic meaning we dissociated the bond and created two equal pieces. (two free radicals) Curved arrows should be half arrows Useful with alkanes with no functional group
Cl
Cl
2 Cl
Radical Stability
We consider carbon radicals to be electron deficient. o o o Allylic > Benzylic >3 > 2 > 1
CH3 CH3 C CH3 > CH3 H C CH3 > CH3 H C H>H H C H
Benzylic Radical
Resonance still holds true here with Benzylic radicals. The radical can be delocalized by the double bonds present in the benzene ring.
Allylic Radical
Allylic Radicals act similar to Benzylic radical in terms of resonance.
Radically Hideous
C H 2C CH 3
Equivalent to
Requires more energy to create and is less stable than Allylic, tertiary, secondary, and primary.
Initiation
In this step you create your two radical species.
Possible (common) initiation reactants
X:X (halogens)
Br, Cl,
RO:OR H:X
Br, Cl, F, etc..,
Cl
Cl
2 Cl
Note that that the propagation step can occur more than twice
Propagation Continued
This can be done until all the Hydrogens have been replaced by Cl.
Termination
There are several termination steps.
Basically you need to radicals to react in order to cancel the reaction out.
h
CH3Cl (mainly) CH4 + Cl2 (large excess) h CCl4 (mainly)
Selectivity of Br and Cl
Bromine is more selective than Chlorine
Bromine tends to go for the more stable Radical Chlorine tends to go for the more available positions
Chlorine Selectivity
What is the major product? A B
A C
B D
With peroxide
Anti-Markovnikovs rule
HBr RO OR heat H Br not Br H
A
(via more stable 2o carbocation)
B
HBr RO-OR RO:OR Heat heat
Ch. 10 - 55
O Br H3C O
Heat
Br H3C
A
H
O Br H2 C O
CH3 radical
O C O
P1
P2 T
Br
H3C
O Br HC 3 O HC 3 Br
CH
+
HC 3 O
O H3C O
Br
Br H3C O
Observation of Delta H
Negative Delta H (exothermic) Positve Delta H (endothermic)
Bond Energies
Bond Energies
Which bond has a higher bond dissociation?
Bond Energies
Calculating Delta H
Never base your calculations off of
Reactants - Products This may work sometimes but not always.
To calculate Delta H
Use: bonds broke bonds formed
Calculating Delta H
Delta H
The Delta H for step 3 is +8kJ mol-1 and 109 kJ mol-1 for step 2. A. True B. False
By Pradeep Ravindra
Alcohol Capabilities
Lone pairs on oxygen atom make it both basic and nucleophilic. Hydroxyl (OH) groups are also very poor leaving groups. Lets examine what different scenarios there are. Basicity: The alcohol, in the presence of a strong acid (H-Cl, H-Br, H+), will become protonated, converting it into a great leaving group (H2O)
Alcohol as a Leaving Group: With the presence of a nucleophile, we have a substitution reaction, with the leaving group being water.
Therefore, by converting an alcohol to a group that departs as a weak base (i.e. H2O, CH3OH, CH3CH2OH), we form a good leaving group. This allows elimination and substitution reactions to occur.
Hydrogen Halides
Order of Reactivity Degree of alcohol: 3 > 2 > 1< methyl By acid: HI > HBr > HCl (HF is generally unreactive) Mechanism: SN1 for Secondary, Tertiary, Allylic, and Benzylic Alcohols SN2 for Primary Alcohols Remember for SN1, since a carbocation forms, hydride and methyl shifts will occur to stabilize it if able. Will produce both front and back attack products due to planar transition state of carbocation. For SN2, the reaction is concerted meaning that the nucleophile comes in from the back side of the leaving group as it leaves.
Sulfonate Esters
Earlier, it was mentioned that oxygens lone pairs make it both basic and nucleophilic Steps: 1. For the formation of diethyl ether, H2SO4 at a warm temperature is used to protonate the OH group, forming H2O+ in one molecule of ethanol. 2. Then, another molecule of ethanol by SN2 attacks the carbon bonded to the H2O+, forcing it to leave as water.
3. Finally, the H2O that left the first molecule of ethanol acts as a base and deprotonates the alcohol, forming diethyl ether
TBS-Cl DMF
Synthesis Example
Starting with this reactant, make the product
??????
Example of use:
Stereochemistry of Epoxidation
Recall that double bonds can be Cis or Trans
Epoxidation is a SYN Addition The oxygen atom can add to either face of an Alkene.
Therefore, if the molecule you form doesnt have a plane of symmetry, you end up with a Racemic (Equal amounts of R and S) Mixture. In the example below, since cis-2-Butene has a plane of symmetry, you actually form a MESO compound, meaning that it has no enantiomer (its suspected enantiomer is actually identical to it) If I had cis-2-pentene, would I form a meso compound after Epoxidation? Draw it out!
Uses of an Epoxide
So weve made an Epoxide. Whats so special about it? As it turns out, since three-membered rings are highly strained, epoxides are much more reactive towards Nucleophilic Substitution (SN) than other ethers Say I wanted to undergo Nucleophilic Substitution. How do we break this highly strained ring? Choose your poison: 1. Acid Nucleophile forms on more stable carbocation (usually higher degree carbon) 2. Base - Nucleophile forms on least sterically hindered carbon (usually lower degree carbon) Remember that the nucleophile comes in from the backside of the epoxide, so the nucleophile and the OH group will be anti with each other
Answers
Review
Answers
Predict the product(s) formed when the following reactants are treated with excess H-Br:
Answers
Mechanism Practice
Mechanism Practice
CHAPTER 12 OVERVIEW
Arthur Makarenko
OXIDATION-REDUCTION
Oxidation- increasing the oxygen content or decreasing the hydrogen content of an organic molecule Reduction- opposite of oxidation, increasing the hydrogen content or decreasing the oxygen content of an organic molecule
REDUCING AGENTS
-lithium aluminum hydride reduces
aldehydes, ketones, esters, and carboxylic acids to alcohols. -sodium borohydride only reduces aldehydes and ketones to alcohols.
PRACTICE PROBLEMS
Would you use LiAlH4 or NaBH4 for the following reactions?
PRACTICE PROBLEMS
Would you use LiAlH4 or NaBH4 for the following reactions?
B A A
OXIDIZING AGENTS
PRACTICE PROBLEMS
What reagents are needed to carry out the following reactions?
A B C D E
PRACTICE PROBLEMS
What reagents are needed to carry out the following reactions?
A D
E
A B C D E
ORGANOLITHIUM
GRIGNARDS REAGENTS
Exactly the same as the organolithium reaction!
GRIGNARDS REAGENTS
An ester can react with two equivalents of a Grignard reagent.
RESTRICTIONS OF ORGANOMETALLICS
Organometallic reagents cannot be prepared in the presence of these groups
In the presence of an alcohol, a protecting group may be implemented to carry out a organometallic reaction. To apply the TMS protecting group, react the alcohol with TMSCl. To remove it, react with fluoride.
SODIUM ALKYNIDES
Can also perform nucleophilic attack on carbonyls
competition between a nucleophilicity and a basicity is the reason why organometallic reactions cannot be performed with certain functional groups.
SYNTHESIS REVIEW
Arthur Makarenko
PROPOSE A SYNTHESIS OF THE FOLLOWING COMPOUND FROM REACTANTS CONTAINING FOUR CARBON ATOMS OR LESS
A OR
Na NH3
H2 Lindlar
OR
H2 Lindlar
H2 Lindlar PCC
H2 Lindlar PCC
1. 2. H3O+
1. 2. H3O+
OR
H2 Lindlar PCC
1.
2. H3O+
H2 Lindlar PCC
1.
A
2. H3O+
H 2O HOH 3 O+ LDA
B
C
H2 Lindlar PCC
1.
2. H3O+
LDA
H2 Lindlar PCC
1.
2. H3O+
LDA
PROPOSE A SYNTHESIS OF THE FOLLOWING COMPOUND FROM REACTANTS CONTAINING FOUR CARBON ATOMS OR LESS
1.
2. H3O+
1.
2. H3O+
Li
1.
2. H3O+
A B
Li
1.
2. H3O+
Li
PBr3
1.
2. H3O+
Li
PBr3
1.
2. H3O+
PROPOSE A SYNTHESIS OF THE FOLLOWING COMPOUND FROM REACTANTS CONTAINING FOUR CARBON ATOMS OR LESS
F-
F-
1. NaH
2.
F-
1. NaH 1. 2. H3O+
2.
F-
2.
F-
2.
F-
2.
Li
2. H3O+
F-
2.
Li
2. H3O+ TMSCl