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Human Genome, Gene Targeted Therapy & Stem Cell: Mohammad Saifur Rohman, Md. PHD
Human Genome, Gene Targeted Therapy & Stem Cell: Mohammad Saifur Rohman, Md. PHD
Human Genome, Gene Targeted Therapy & Stem Cell: Mohammad Saifur Rohman, Md. PHD
OR
OR
• Molecular diagnosis
– $1000 for human genome sequence
• Other barriers
– Lack of time
– Lack of reimbursement for collecting the
information
– Concerns about insurance / employment
discrimination
– Lack of convenient tools / software for data
collection
Prevention Strategies for High Risk Families
• 4 components of evaluation
– Analytical validity
– Clinical validity
– Clinical utility
– Ethical, legal and social issues
Gleevec™
CML Normal
Cost-Effective?
• Gleevec as 1st line therapy for CML
• 6 years increased survival over interferon-
alpha therapy
• $43,100/per life-year saved
Colon Colon
Cancer Cancer
51 56
Colon Colon
Cancer Cancer
51 56
Disease prevention
Diagnostics
Pharmacogenomics
Therapeutic
Preventive Developments
Time
Medicine • Gene Therapy
• Drug Therapy
Genes
• Are carried on a chromosome
• When there is a mutation in the gene, then it will change the codon, which will
change which amino acid is called for which will change the conformation of the
protein which will change the function of the protein. Genetic disorders result
from mutations in the genome.
What is Gene Therapy
http://encarta.msn.com/media_461561269/Gene_Therapy.html
Viruses
• Replicate by inserting their DNA into a host
cell
• Gene therapy can use this to insert genes that
encode for a desired protein to create the
desired trait
• Four different types
Adenovirus cont.
http://en.wikipedia.org/wiki/Gene_therapy
Non-viral Options
• Direct introduction of therapeutic DNA
– But only with certain tissue
– Requires a lot of DNA
• Creation of artificial lipid sphere with aqueous core,
liposome
– Carries therapeutic DNA through membrane
• Chemically linking DNA to molecule that will bind to special
cell receptors
– DNA is engulfed by cell membrane
– Less effective
• Trying to introduce a 47th chromosome
– Exist alongside the 46 others
– Could carry a lot of information
– But how to get the big molecule through membranes?
Problems with Gene Therapy
• Short Lived
– Hard to rapidly integrate therapeutic DNA into genome and
rapidly dividing nature of cells prevent gene therapy from long
time
– Would have to have multiple rounds of therapy
• Immune Response
– new things introduced leads to immune response
– increased response when a repeat offender enters
• Viral Vectors
– patient could have toxic, immune, inflammatory response
– also may cause disease once inside
• Multigene Disorders
– Heart disease, high blood pressure, Alzheimer’s, arthritis and
diabetes are hard to treat because you need to introduce more
than one gene
• May induce a tumor if integrated in a tumor suppressor gene
because insertional mutagenesis
Unsuccessful Gene therapies
• Jesse Gelsinger, a gene therapy patient who lacked ornithine
transcarbamylase activity, died in 1999.
• Within hours after doctors shot the normal OTC gene attached to a
therapeutic virus into his liver, Jesse developed a high fever. His
immune system began raging out of control, his blood began
clotting, ammonia levels climbed, his liver hemorrhaged and a flood
of white blood cells shut down his lungs.
• One problem with gene therapy is that one does not have control
over where the gene will be inserted into the genome. The location
of a gene in the genome is of importance for the degree of
expression of the gene and for the regulation of the gene (the so-
called "position effect"), and thus the gene regulatory aspects are
always uncertain after gene therapy
Successful Gene Therapy for Severe Combine
Immunodeficiency
• Protein dysfunction
• Organ Dysfunction
Mammalian development
Oocyte Zygote Developmental
potential
Sperm Totipotent
Trophoblast
(extraembryonic)
Epiblast
Primitive Multipotent
Primitive streak
48
Emerging Technol Platform for SCs, 2010.-
Embryonic Stem Cell Pathway
Endoderm
Tissue
stem cells
Neurones
Muscle
Blood cells
Lung/Gut/Liver
DNA
Tissue
transfection
Engineering
Cell Transplantation
49
SC Technol, Basic Applic 2010.-
Embryonic and Adult Stem Cells
totipotent
Loose definition
Strict definition pluripotent
2. Expansion in vitro
6. Mobilization
Cellular
Plasticity
• The discovery of mammalian cellular plasticity
raises the possibility of reprogramming restricted
cell fate, & may provide an alternative to many of
the obstacles associated with using embryonic &
adult stem cells in clinical applications.-
• With a safe & efficient dedifferentiation process,
healthy, abundant & easily accesible adult cells
from a given individual could be used to generate
different functional cell types to repair damaged
tissues & organ.-
Lyssiatis et al, Emmerging Techno Platform for SCs, 2009.- 56
Examples of transcription factor over expression or
ablation experiments that result in cell fate changes
57
Nature 2009.-
Methods Used to
Cellular Reprogramming
• Nuclear Transplantation.-
Somatic Cell Nuclear Transfer (SCNT)
• Cell Fusion.-
• Culture Mediated.-
• Genetic Approach.-
• Small Molecule.-
• Small Molecules
Small molecules can target stem cells
or progenitor cells for self-renewal or
differentiation.-
(example : retinoic acid, cytidine
analogues)
63
Small
Molecules
• Selected chemical compounds that regulate
cell fate : synthetic small molecules &
natural products that bind to nuclear
receptors ( all – trans retinoic acid &
dexamethasone), histone & DNA modifing
enzymes (trichostatin A, BIX01294, 5-
azacytidine) protein kinase & signaling
molecules (reversin, purmorphamine,
forskolin, QSII, B10, cyclopamin,
pluripotin & Y-27632).-
Lineage-specific
differentiation
conditions
Small molecule
induced
Myoblasts multipotency
(a) Adipocytes
Osteoblast,
adipocytes Fibroblast
C2C12 Osteoblasts,
myoblasts Myogenic cells
HN O
N N
N
N
N N
H
Osteoblasts, H
3TE1
adipocytes Reversine osteoblast
Adipocytes
(b) Skeletal
myoblasts
O O
OH
Oligodendrocytes
HDAC
inhibitors Neural
Stem-like
cell
Astrocytes
Oligodendrocyte
Precursor cells
(c) Neurons
65
Emerging Technol Platform for SCs, 2010.-
Therapeutic strategies for regenerative
medicine
Terminally differentiated cells
Terminally differentiated cells
A B
Bone marrow
Progenitor c
cell
66
Nature 2008.-
The Use of Stem Cells in Medicine:
Which type of cells used ?
1. Kajstura J, Beltrami CA, et al. Proc Natl Acad Sci USA 1998; 95: 8801-8805.
2. Beltrami AP, et al. N Engl J Med 2001; 344: 1750-1757
3. Quaini F, et al. N Engl J Med 2002;346:5–15
Factors affecting regeneration
• The optimal cell type and number for patient with acute
and chronic diseases
Dimmeler S, Burchfield J, Zeiher AM. Arterioscler Thromb Vasc Biol 2008; 28:208-216.
Clinical Trials: Cell Preparation
Dimmeler S, Burchfield J, Zeiher AM. Arterioscler Thromb Vasc Biol 2008; 28:208-216.
Mechanism of Actions
Dimmeler S, Burchfield J, Zeiher AM. Arterioscler Thromb Vasc Biol 2008; 28:208-216.
The proper time ?
Dimmeler S, Burchfield J, Zeiher AM. Arterioscler Thromb Vasc Biol 2008; 28:208-216.
Myoblast, CD133 and mesenchymal cells
• The Myoblast Autologous Grafting in Ischemic Cardiomyopathy
(MAGIC) trial was a randomized, placebo-controlled, 3-arm,
double-blind trial. Myoblast transfer did not improve regional or
global LV function beyond that seen in control patients.
• A higher number of arrhythmic events in the myoblast-treated
patients. Another study of CAuSMIC also used myoblast showing
improvement QOL
Dimmeler S, Burchfield J, Zeiher AM. Arterioscler Thromb Vasc Biol 2008; 28:208-216.
Therapeutic strategy
• Preactivation of Cells
Pretreament to improve
Survival
Homing
Functional engrafment
Functional activity
Dimmeler S, Leri A.
Circ Res 2008; 102; 1319-1330
Current Clinical Uses of Adult Stem Cells