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CBLG 143 - 1
CBLG 143 - 1
CBLG 143 - 1
Lecture # 1:
Introduction
The Chemical Basis of Life: Water and Carbon
The Scientific
Method:
• A systematic
approach use
by scientists to
gain
understanding
of the natural
world
Science Is Both a Body of Knowledge
and a Process
• Science is the study of the natural world
• Science is two things:
1. Knowledge about the natural world
2. The process used to acquire knowledge
• Called the scientific method
The Process of Science
Science is…
• a body of knowledge
• E.g., biology, the study of living
organisms
• the discovery of something
new and unknown
Science is NOT…
• recalling specific facts about
the world.
• memorizing what is already
known.
1. Inductive Reasoning
• makes generalizations based on observations
about the world
• State Hypothesis
For example,
• Observation: “Every winter in the past was
colder than the preceding summer.”
• Generalization: “Winter will always be colder
than summer”
2. Deductive Reasoning
• flows from general premises to predicted
specific results.
• Are often in the form of “if…then”
statements
• (Test Hypothesis)
Hypothesis vs Theory
• A scientific theory is
• much broader in scope than a hypothesis and
• supported by a large and usually growing body of evidence.
• For a hypothesis to become a theory it must
• be broad
• be extensively tested
• be supported over time by different, independent lines of research
• explain a broad range of facts
• have a high degree of reliability
• Theories may be refuted in the future
Everyday use of “theory”
• Untested ideas based on little information
Theories
• Three theories form the framework for modern
biological science:
• The cell theory
• What are organisms made of?
• The theory of evolution by natural selection
• Where do organisms come from?
• The Germ theory of disease
• What causes disease?
Louis Pasteur’s Experiment
Pasteur experiment with straight-necked flask: Pasteur experiment with swan-necked flask:
Spontaneous
generation
Both hypotheses hypothesis
Cells supported No cells rejected
Cells arise from preexisting cells, not spontaneously from nonliving material.
• Clinical trials consist of several experimental groups that receive different
dosages of the drug and a control group that receives a placebo, a substance
made to look like the drug being tested
• A double-blind study occurs when neither researchers nor participants know
which group is receiving the treatment
• Epidemiological studies look for patterns that occur in large populations
• True
• False
Practice Question
1. Receptor
• Monitors the environment
• Responds to changes in the environment (stimuli)
• Sends information to control center
2. Control center (in the brain)
• Determines the set point at which the variable is maintained
• Analyzes information
• Determines appropriate response
3. Effector
• Provides a means for response to the stimulus (muscle or gland)
Homeostatic Control Mechanisms
3 Input: Control
Information center 4 Output:
sent along Information sent
afferent along efferent
pathway to pathway to
2 Change
detected
by receptor
5 Response of
Imb effector feeds
1 Stimulus: ala
Produces nc back to
e influence
change
in variable magnitude of
stimulus and
Variable (in homeostasis) returns variable
to homeostasis
Imb
ala
n ce
Figure 1.4
Negative Feedback
Mechanisms
• Most common way that homeostasis is maintained in
the body
• In negative feedback systems the response of the
effector negates or opposes the stimulus (shuts off the
original stimulus)
• Example: Regulation of room temperature
Practice Question
• Properties of Life
• The Scientific Method
• Classification of living organisms
• Life’s Hierarchy of Organization
• Ecosystems
• Energy Energy flow through ecosystems
• Biogeochemical cycles
• Classification of parasites
• The Disease triangle
Diversity of Life Forms
How can we group organisms?
• What are the differences and similarities among the
following groups of organisms?
– A sunflower (plant)
– A chimpanzee (animal)
– A mushroom (fungi)
Community
All organisms in this
wetland ecosystem
Population
All alligators living
in the wetlands
Nerve
Spinal
cord
Organ system
Nervous system
Biological Organization
Brain Organ
Brain
Tissue
Nervous tissue
Atom
Cell Nucleus
Nerve cell
Organelle Molecule
Nucleus DNA
Levels of Structural Organization
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Practice Question
You are classifying an organism and trying to determine to which
domain it belongs. The organism is unicellular and was isolated from a
very unusual environment. This organism probably belongs in which
domain?
A) Eukarya
B) Archaea
C) Bacteria
D) None of the domains above is correct.
Iconfinder.com
Practice Question
Iconfinder.com
The Chemical Level of
Organization
Basic Atomic Structure
• Atoms are composed of
• Protons—positively charged particles
• Neutrons—neutral particles
• Electrons—negatively charged particles
• Protons and neutrons are located in the nucleus
• Electrons are found in orbitals surrounding the
nucleus
Electron Arrangement around the Nucleus
Hydrogen
Carbon
Mass number
(number of protons
+ neutrons)
Atomic number
(number of protons)
The Structure of Atoms Found in Organisms
Valence = 1 2 3 4 3 2 1 0
The Molecular Level
of Organization
Chemical Bonding
• Unfilled electron orbitals allow formation of chemical
bonds
• Atoms
• Are most stable when each electron orbital is filled
• Molecules and Compounds
• Are substances held together by covalent bonds
Types of Chemical Bonds
• Covalent bonds
• Polar covalent bonds
• Non-polar Covalent bonds
• Ionic bonds
• Hydrogen bonds
• Van der Waals forces
Covalent Bond
• Formed by atoms that share a pair of electrons
(a) A sodium ion being formed (c) Table salt (NaCl) is a crystal composed
of two ions.
Cl–
Loss of electron
Cation formation Na+
Sodium ion
has positive
charge
Gain of electron
Anion formation
Chloride ion
has negative
charge
Ion Formation and
Ionic Bonding
Hydrogen Bonds (Water, Ammonia)
• A hydrogen bond is the attractive force between the
hydrogen attached to an electronegative atom of one
molecule and an electronegative atom of a different
molecule.
• Electronegative atoms: O, N, F
Van der Waals interactions
WEAK
While individual bonds (ionic, hydrogen, van der Waals) are weak,
collectively they have strength.
Practice Question
a) Na and Cl
b) C and O
c) N and O
d) Si and Cl
e) H and H
Practice Question
• Na and Cl
• C and O
• N and O
• Si and Cl
• H and H
Practice Question
• Water
• Most abundant inorganic compounds
• unique due to its structure
• Small size
• Bent shape
• Highly polar covalent bonds
• Overall polarity
• Vital properties
• High heat capacity
• Solvent properties
• Chemical reactivity
• Cushioning
Why Is Water Such an Efficient Solvent?
• Hydrophobic
molecules
• Are uncharged and
nonpolar
compounds
• They do not
dissolve in water
Correlation of Water’s Structure and Properties
Becase of surface
tension, light
objects do not
fall through the
water’s surface
molecules at the
surface form hydrogen
bonds with nearby
Surface Tension
water molecules and
resist the upward pull
of adhesion.
• Salts
• Easily dissociate into ions in the presence of water
• Vital to many body functions
• Include electrolytes which conduct electrical currents
Important Inorganic Compounds
• Acids
• Can release detectable hydrogen ions
• Bases
• Proton acceptors
• Neutralization reaction
• Acids and bases react to form water and a salt
Acid–Base Reactions and pH
• Proton [hydrogen ion (H)] concentration is the basis
of the pH scale
• pH expresses proton concentration in a solution
• The pH of pure water is 7
• Acids have a pH of less than 7
• Bases have a pH of greater than 7
• In acid–base reactions
• A proton donor (acid) transfers a proton to
• A proton acceptor (base)
• Neutralization reaction
• Acids and bases react to form water and a salt
pH
• Carbonic acid (H2CO3) and bicarbonate ion (HCO3-) act as one of body’s
most important buffer pairs
C6H12O6 Glucose
C8H18 Octane
Functional Groups:
Determinants of Chemical Behavior