Past Perfect Tense

(+) S + Had + V3 Past Tense

(-) S + Had + Not + V3 (+) S + V2
(?) Had + S + V3 ? (-) S + Did + Not + V1
(?) Did + S + V1?

Past Perfect + Before + Past Tense

Past Tense + After + Past Perfect
Example
1. They had arrived before I arrived
Past Perfect Past Tense
(-) They had not arrived before I arrived
(?) Had they arrived before I arrived?

2. She left   after they had come

Past Tense Past Perfect
(-) She left after they had not come
(?) Did she leave after they had come?
 Future Perfect Tense

Time Complement:
(+) S + Will + Have + V3 By this time = pada saat ini
By the time = pada saat
(-) S + Will + NOT + Have + V3 When = ketika
(?) Will + S + Have + V3 ? As soon as = sesegera
Before = sebelum

Example:
Pekerjaanku akan sudah selesai jam 4 sore.
(+) I will have finished working in 4 PM.
(-) I will not have finished working in 4 PM.
(?) Will I have finished working in 4 PM?